Wall clock time and date at job start Tue Mar 31 2020 20:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50700 * 109.47798 * 185.00026 * 4 2 1 6 6 O 1.21284 * 119.99429 * 359.97438 * 5 4 2 7 7 N 1.34767 * 120.00754 * 180.02562 * 5 4 2 8 8 C 1.46928 * 120.62662 * 359.97438 * 7 5 4 9 9 C 1.53194 * 108.77859 * 233.58407 * 8 7 5 10 10 C 1.53034 * 109.31421 * 305.37000 * 9 8 7 11 11 C 1.53049 * 109.54131 * 61.36065 * 10 9 8 12 12 H 1.08999 * 109.49277 * 58.61419 * 11 10 9 13 13 N 1.46496 * 109.49966 * 178.68226 * 11 10 9 14 14 C 1.36934 * 120.00155 * 274.99909 * 13 11 10 15 15 H 1.08001 * 119.99937 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99958 * 180.02562 * 14 13 11 17 17 N 1.31618 * 120.00376 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99908 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47423 * 59.99888 * 18 16 14 20 20 H 1.48506 * 109.47078 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47199 * 299.99719 * 18 16 14 22 22 C 1.46923 * 120.63614 * 179.72136 * 7 5 4 23 23 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 24 24 C 1.45754 * 117.94764 * 119.73275 * 23 2 1 25 25 C 1.53105 * 110.38597 * 160.74379 * 24 23 2 26 26 C 1.53348 * 108.52461 * 51.11975 * 25 24 23 27 27 C 1.53068 * 108.42370 * 292.31034 * 26 25 24 28 28 C 1.33353 * 117.94396 * 300.00322 * 23 2 1 29 29 O 1.21277 * 118.24507 * 2.23969 * 28 23 2 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 34 34 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 35 35 H 1.09003 * 109.59057 * 353.37571 * 8 7 5 36 36 H 1.09005 * 109.58847 * 113.80047 * 8 7 5 37 37 H 1.08999 * 109.49296 * 65.31762 * 9 8 7 38 38 H 1.08998 * 109.50410 * 185.38083 * 9 8 7 39 39 H 1.09005 * 109.46350 * 181.38154 * 10 9 8 40 40 H 1.09002 * 109.46069 * 301.35313 * 10 9 8 41 41 H 0.97005 * 119.99898 * 94.99851 * 13 11 10 42 42 H 0.96992 * 120.00741 * 179.97438 * 17 16 14 43 43 H 1.09005 * 109.58600 * 246.20234 * 22 7 5 44 44 H 1.08997 * 109.58519 * 6.62514 * 22 7 5 45 45 H 1.09000 * 109.30386 * 281.24277 * 24 23 2 46 46 H 1.09006 * 109.29948 * 40.62016 * 24 23 2 47 47 H 1.08994 * 109.80453 * 291.33037 * 25 24 23 48 48 H 1.09001 * 109.54471 * 170.75066 * 25 24 23 49 49 H 1.08994 * 109.67340 * 172.57772 * 26 25 24 50 50 H 1.08997 * 109.67559 * 52.04142 * 26 25 24 51 51 H 1.09007 * 109.40104 * 288.77308 * 27 26 25 52 52 H 1.08998 * 109.40152 * 169.03550 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5419 -0.6149 1.3127 6 8 4.1451 -0.0211 0.4440 7 7 4.2150 -1.1805 2.3341 8 6 3.4984 -1.9036 3.3936 9 6 3.9108 -1.3254 4.7510 10 6 5.4351 -1.3716 4.8788 11 6 6.0673 -0.5171 3.7776 12 1 5.7072 0.5083 3.8610 13 7 7.5252 -0.5365 3.9199 14 6 8.1417 0.3403 4.7720 15 1 7.5532 1.0459 5.3395 16 6 9.5232 0.3222 4.9063 17 7 10.2405 -0.5381 4.2151 18 14 10.3642 1.5179 6.0693 19 1 9.8665 1.2976 7.4509 20 1 11.8321 1.2958 6.0312 21 1 10.0628 2.9104 5.6507 22 6 5.6797 -1.0906 2.4066 23 7 2.0184 -0.6906 -1.1962 24 6 2.8481 0.0622 -2.1286 25 6 3.6413 -0.8913 -3.0263 26 6 2.6684 -1.9060 -3.6391 27 6 2.1401 -2.8066 -2.5199 28 6 1.6713 -1.9668 -1.3665 29 8 0.9376 -2.4764 -0.5463 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2055 35 1 2.4239 -1.7827 3.2561 36 1 3.7572 -2.9617 3.3533 37 1 3.5707 -0.2925 4.8248 38 1 3.4602 -1.9148 5.5495 39 1 5.7297 -0.9834 5.8538 40 1 5.7768 -2.4019 4.7798 41 1 8.0538 -1.1706 3.4104 42 1 11.2058 -0.5505 4.3087 43 1 6.1131 -2.0836 2.2872 44 1 6.0449 -0.4330 1.6177 45 1 2.2121 0.6976 -2.7449 46 1 3.5427 0.6881 -1.5683 47 1 4.3924 -1.4156 -2.4356 48 1 4.1273 -0.3248 -3.8206 49 1 3.1886 -2.5106 -4.3820 50 1 1.8378 -1.3800 -4.1097 51 1 2.9360 -3.4713 -2.1838 52 1 1.3081 -3.4016 -2.8963 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999148910.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:36 Heat of formation + Delta-G solvation = -63.973604 kcal Electronic energy + Delta-G solvation = -31163.462291 eV Core-core repulsion = 27162.756069 eV Total energy + Delta-G solvation = -4000.706222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.06994 -39.69233 -37.34490 -36.51397 -35.35898 -34.46587 -32.24619 -31.50843 -31.16196 -29.65095 -28.92326 -27.56559 -24.97439 -24.63150 -23.83593 -23.27636 -22.01786 -21.39519 -20.03368 -18.88044 -18.41716 -17.18894 -17.16643 -16.85786 -16.21528 -15.86569 -15.31221 -15.22358 -14.70317 -14.43858 -14.24827 -14.09830 -14.01481 -13.88782 -13.55946 -13.45267 -13.36691 -12.94978 -12.86343 -12.71136 -12.40859 -12.29044 -12.05484 -11.88682 -11.75872 -11.50118 -11.18551 -11.14578 -11.09160 -10.92288 -10.91189 -10.89350 -10.62288 -10.40571 -10.34093 -10.09953 -9.72606 -9.47925 -9.44608 -8.91316 -8.73511 -8.34545 -6.99323 -5.78279 -3.07868 2.55381 2.83118 2.92656 3.18602 3.43229 3.47723 3.48638 4.35979 4.54672 4.56841 4.57721 4.58326 4.62768 4.75775 4.98996 5.09421 5.15812 5.18141 5.20577 5.27608 5.35726 5.39116 5.44761 5.48153 5.54484 5.57287 5.58840 5.61582 5.64200 5.68427 5.74374 5.77788 5.83584 5.84394 5.88560 6.03903 6.07187 6.12908 6.16554 6.27357 6.40132 6.49926 6.56183 6.74694 6.88973 7.05425 7.46257 7.64711 7.67945 8.10537 8.37954 8.41127 9.50768 10.06408 10.41508 11.44204 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.002770 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.435150 B =10105.844931 C =10868.288428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.159 3.841 3 H 0.092 0.908 4 C -0.162 4.162 5 C 0.515 3.485 6 O -0.544 6.544 7 N -0.606 5.606 8 C 0.108 3.892 9 C -0.133 4.133 10 C -0.137 4.137 11 C 0.170 3.830 12 H 0.049 0.951 13 N -0.721 5.721 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.932 5.932 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.108 3.892 23 N -0.582 5.582 24 C 0.113 3.887 25 C -0.134 4.134 26 C -0.123 4.123 27 C -0.135 4.135 28 C 0.516 3.484 29 O -0.559 6.559 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.061 0.939 44 H 0.091 0.909 45 H 0.057 0.943 46 H 0.096 0.904 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.068 0.932 51 H 0.096 0.904 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.947 -2.712 -12.908 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.056 3.944 3 H 0.110 0.890 4 C -0.202 4.202 5 C 0.303 3.697 6 O -0.422 6.422 7 N -0.339 5.339 8 C -0.015 4.015 9 C -0.172 4.172 10 C -0.178 4.178 11 C 0.059 3.941 12 H 0.067 0.933 13 N -0.362 5.362 14 C -0.370 4.370 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.015 4.015 23 N -0.313 5.313 24 C -0.009 4.009 25 C -0.172 4.172 26 C -0.161 4.161 27 C -0.175 4.175 28 C 0.305 3.695 29 O -0.440 6.440 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.075 0.925 46 H 0.115 0.885 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.092 0.908 50 H 0.086 0.914 51 H 0.115 0.885 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.892 -2.514 -12.864 24.663 hybrid contribution 0.866 0.366 0.676 1.158 sum -20.026 -2.148 -12.188 23.541 Atomic orbital electron populations 1.22244 0.94355 1.04553 1.01662 1.20807 0.94092 0.96196 0.83349 0.89003 1.22229 0.92710 1.05759 0.99549 1.20589 0.89807 0.78155 0.81102 1.90599 1.70358 1.42916 1.38366 1.48113 1.07809 1.54156 1.23824 1.21762 0.96313 0.96022 0.87415 1.21931 0.98314 1.01166 0.95757 1.22281 0.92433 1.01256 1.01808 1.20547 0.86124 0.96716 0.90754 0.93300 1.42307 0.99490 1.42808 1.51631 1.19160 0.89843 1.11251 1.16789 0.91245 1.24742 0.96260 0.99463 1.00325 1.69645 1.05502 1.38435 1.44466 0.86265 0.78552 0.80725 0.80621 1.21274 1.21665 1.21232 1.22030 0.77962 1.01496 1.00021 1.47236 1.49977 1.11049 1.23075 1.21540 0.93687 0.94369 0.91351 1.21879 0.98238 0.97792 0.99293 1.21666 0.99420 0.97652 0.97358 1.21658 1.03077 0.98415 0.94361 1.20076 0.80234 0.81839 0.87330 1.90587 1.37534 1.70935 1.44928 0.91849 0.89606 0.92734 0.88422 0.86577 0.90225 0.91549 0.91911 0.91373 0.91619 0.92541 0.78231 0.93407 0.92024 0.89035 0.92507 0.88539 0.90636 0.90023 0.90785 0.91366 0.88527 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.08 37.16 0.34 -1.28 16 2 C 0.16 1.74 2.20 -67.93 -0.15 1.59 16 3 H 0.09 1.00 7.60 -51.93 -0.39 0.61 16 4 C -0.16 -1.89 3.35 -27.89 -0.09 -1.99 16 5 C 0.52 7.64 7.56 -10.99 -0.08 7.56 16 6 O -0.54 -9.29 12.67 5.55 0.07 -9.22 16 7 N -0.61 -9.10 2.97 -172.52 -0.51 -9.61 16 8 C 0.11 1.32 6.34 -3.71 -0.02 1.30 16 9 C -0.13 -1.74 6.08 -26.61 -0.16 -1.90 16 10 C -0.14 -2.38 5.46 -26.69 -0.15 -2.52 16 11 C 0.17 3.40 2.93 -67.60 -0.20 3.20 16 12 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 13 N -0.72 -18.08 5.13 -53.11 -0.27 -18.35 16 14 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 18 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.11 1.93 5.93 -3.51 -0.02 1.91 16 23 N -0.58 -6.45 2.23 -167.26 -0.37 -6.82 16 24 C 0.11 1.10 5.74 -4.39 -0.03 1.08 16 25 C -0.13 -1.14 6.03 -26.50 -0.16 -1.30 16 26 C -0.12 -0.88 6.03 -26.52 -0.16 -1.04 16 27 C -0.14 -1.20 6.03 -28.10 -0.17 -1.37 16 28 C 0.52 6.09 6.86 -11.87 -0.08 6.01 16 29 O -0.56 -7.89 12.46 5.56 0.07 -7.82 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.98 5.84 -51.93 -0.30 0.67 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.95 7.69 -51.93 -0.40 0.55 16 34 H 0.12 1.48 5.70 -51.93 -0.30 1.18 16 35 H 0.08 0.80 5.93 -51.93 -0.31 0.49 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.38 10.21 7.80 -40.82 -0.32 9.89 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.09 1.83 7.00 -51.93 -0.36 1.47 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.10 1.14 6.28 -51.93 -0.33 0.81 16 47 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 48 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 51 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 52 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -32.41 394.61 -9.76 -42.18 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -9.01 Total: 9.67 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -1.38 Total: 4.04 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.43 Total: -62.17 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.14 Total: -17.04 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.41 -9.76 -42.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999148910.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.797 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds