Wall clock time and date at job start Tue Mar 31 2020 20:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47273 * 2 1 4 4 C 1.53000 * 109.47488 * 120.00837 * 2 1 3 5 5 C 1.50699 * 109.47173 * 185.00115 * 4 2 1 6 6 O 1.21277 * 120.00411 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99535 * 179.97438 * 5 4 2 8 8 C 1.46931 * 120.63242 * 359.71522 * 7 5 4 9 9 C 1.53621 * 108.54127 * 126.37600 * 8 7 5 10 10 C 1.53039 * 109.24510 * 54.85230 * 9 8 7 11 11 C 1.53037 * 109.53793 * 298.51183 * 10 9 8 12 12 H 1.09003 * 109.50080 * 301.41022 * 11 10 9 13 13 N 1.46503 * 109.52306 * 181.33363 * 11 10 9 14 14 C 1.46499 * 119.99867 * 300.14838 * 13 11 10 15 15 C 1.36931 * 120.00485 * 120.14592 * 13 11 10 16 16 H 1.08002 * 119.99695 * 21.99095 * 15 13 11 17 17 C 1.38811 * 120.00481 * 201.99644 * 15 13 11 18 18 N 1.31619 * 119.99861 * 12.67706 * 17 15 13 19 19 Si 1.86802 * 120.00081 * 192.67962 * 17 15 13 20 20 H 1.48488 * 109.47082 * 89.99832 * 19 17 15 21 21 H 1.48498 * 109.46988 * 209.99831 * 19 17 15 22 22 H 1.48503 * 109.47026 * 329.99795 * 19 17 15 23 23 C 1.46930 * 120.62634 * 180.02562 * 7 5 4 24 24 N 1.46508 * 109.47222 * 240.00751 * 2 1 3 25 25 C 1.46759 * 124.35378 * 119.99694 * 24 2 1 26 26 C 1.54479 * 105.47309 * 163.00586 * 25 24 2 27 27 C 1.54627 * 101.79915 * 25.39871 * 26 25 24 28 28 C 1.34421 * 124.34167 * 300.02349 * 24 2 1 29 29 O 1.21280 * 124.95109 * 0.39094 * 28 24 2 30 30 H 1.09003 * 109.47249 * 59.99837 * 1 2 3 31 31 H 1.08997 * 109.46899 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47139 * 299.99578 * 1 2 3 33 33 H 1.09007 * 109.46706 * 304.99697 * 4 2 1 34 34 H 1.08997 * 109.47264 * 64.99376 * 4 2 1 35 35 H 1.09003 * 109.58609 * 246.20304 * 8 7 5 36 36 H 1.08994 * 109.58343 * 6.62674 * 8 7 5 37 37 H 1.09002 * 109.62941 * 294.86167 * 9 8 7 38 38 H 1.09001 * 109.42862 * 174.72859 * 9 8 7 39 39 H 1.09000 * 109.45701 * 178.49240 * 10 9 8 40 40 H 1.08999 * 109.45924 * 58.53509 * 10 9 8 41 41 H 1.08997 * 109.47297 * 94.33529 * 14 13 11 42 42 H 1.09004 * 109.47254 * 214.33603 * 14 13 11 43 43 H 1.09004 * 109.47434 * 334.33053 * 14 13 11 44 44 H 0.96994 * 119.99740 * 179.97438 * 18 17 15 45 45 H 1.08999 * 109.58707 * 353.36715 * 23 7 5 46 46 H 1.09000 * 109.58641 * 113.65718 * 23 7 5 47 47 H 1.09004 * 110.24180 * 44.00929 * 25 24 2 48 48 H 1.09000 * 110.31872 * 282.04541 * 25 24 2 49 49 H 1.08997 * 110.97024 * 143.54118 * 26 25 24 50 50 H 1.09002 * 110.96802 * 267.26061 * 26 25 24 51 51 H 1.08994 * 110.48364 * 93.89955 * 27 26 25 52 52 H 1.09001 * 110.48488 * 216.53967 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5420 -0.6150 1.3125 6 8 4.1451 -0.0211 0.4440 7 7 4.2149 -1.1799 2.3346 8 6 3.4977 -1.8973 3.3975 9 6 4.1015 -3.3035 3.5311 10 6 5.6100 -3.1851 3.7605 11 6 6.2579 -2.4954 2.5578 12 1 6.0518 -3.0695 1.6544 13 7 7.7060 -2.4107 2.7634 14 6 8.2405 -1.6866 3.9194 15 6 8.5599 -3.0083 1.8753 16 1 8.2286 -3.2258 0.8706 17 6 9.8512 -3.3348 2.2663 18 7 10.1803 -3.3052 3.5403 19 14 11.1217 -3.8162 0.9843 20 1 11.8365 -2.6020 0.5156 21 1 12.0955 -4.7635 1.5838 22 1 10.4429 -4.4658 -0.1658 23 6 5.6791 -1.0842 2.4105 24 7 2.0184 -0.6905 -1.1963 25 6 2.8655 -0.0711 -2.2222 26 6 3.4718 -1.2463 -3.0207 27 6 2.4203 -2.3574 -2.7954 28 6 1.7476 -1.9727 -1.4955 29 8 1.0639 -2.7139 -0.8216 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6055 -0.2619 2.1369 34 1 1.7517 -1.7716 1.2054 35 1 3.6064 -1.3591 4.3392 36 1 2.4419 -1.9744 3.1381 37 1 3.9157 -3.8701 2.6186 38 1 3.6439 -3.8157 4.3775 39 1 6.0380 -4.1801 3.8825 40 1 5.7956 -2.5975 4.6595 41 1 8.4172 -2.3862 4.7364 42 1 9.1788 -1.2048 3.6442 43 1 7.5233 -0.9300 4.2376 44 1 11.0825 -3.5337 3.8135 45 1 6.0630 -0.6248 1.4996 46 1 5.9616 -0.4791 3.2720 47 1 3.6566 0.5151 -1.7545 48 1 2.2658 0.5606 -2.8775 49 1 3.5557 -0.9971 -4.0785 50 1 4.4399 -1.5368 -2.6126 51 1 1.6968 -2.3688 -3.6105 52 1 2.9059 -3.3288 -2.7016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027646243.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:03 Heat of formation + Delta-G solvation = -45.107719 kcal Electronic energy + Delta-G solvation = -31549.377648 eV Core-core repulsion = 27549.489512 eV Total energy + Delta-G solvation = -3999.888136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.77120 -39.67070 -37.47408 -36.31823 -35.05904 -34.93281 -32.31505 -31.29419 -30.28882 -29.12851 -27.80928 -27.52241 -26.00317 -24.86536 -23.58489 -22.59779 -21.98081 -21.60542 -19.80400 -18.82379 -18.43724 -17.08478 -16.88030 -16.70033 -16.46338 -15.88318 -15.14436 -15.03143 -14.69472 -14.13895 -14.02946 -13.93566 -13.79471 -13.70333 -13.56269 -13.34373 -12.98115 -12.82878 -12.69349 -12.65262 -12.36980 -12.05728 -11.98281 -11.90617 -11.81971 -11.57314 -11.28153 -11.04820 -11.01675 -10.91714 -10.83230 -10.62486 -10.39358 -10.28582 -10.10741 -9.86928 -9.76426 -9.62303 -9.46798 -8.71242 -8.59839 -8.29481 -6.75375 -5.71416 -3.17113 2.58154 2.83144 2.98079 3.21722 3.39657 3.45977 3.47238 4.27615 4.46643 4.50367 4.55772 4.66356 4.80087 4.92453 4.99954 5.05355 5.15417 5.20362 5.30889 5.35838 5.40724 5.43567 5.46624 5.52392 5.54259 5.56481 5.61666 5.74057 5.75663 5.78912 5.83343 5.88523 5.99097 6.02077 6.04115 6.19570 6.24979 6.41246 6.53579 6.57157 6.68694 6.81255 6.96140 7.02180 7.15488 7.39295 7.67897 7.73051 7.82354 8.18498 8.37979 8.43503 9.24559 9.87235 10.35533 11.33457 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.003461 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.557408 B = 8087.579051 C = 9247.139209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.174 3.826 3 H 0.094 0.906 4 C -0.160 4.160 5 C 0.515 3.485 6 O -0.543 6.543 7 N -0.606 5.606 8 C 0.108 3.892 9 C -0.132 4.132 10 C -0.131 4.131 11 C 0.170 3.830 12 H 0.062 0.938 13 N -0.593 5.593 14 C 0.163 3.837 15 C -0.253 4.253 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.908 5.908 19 Si 0.905 3.095 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.099 3.901 24 N -0.601 5.601 25 C 0.105 3.895 26 C -0.131 4.131 27 C -0.156 4.156 28 C 0.517 3.483 29 O -0.540 6.540 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.029 0.971 42 H 0.043 0.957 43 H -0.003 1.003 44 H 0.252 0.748 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.095 0.905 48 H 0.063 0.937 49 H 0.086 0.914 50 H 0.084 0.916 51 H 0.099 0.901 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.641 7.163 -6.412 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.112 0.888 4 C -0.201 4.201 5 C 0.303 3.697 6 O -0.421 6.421 7 N -0.339 5.339 8 C -0.015 4.015 9 C -0.171 4.171 10 C -0.171 4.171 11 C 0.061 3.939 12 H 0.081 0.919 13 N -0.315 5.315 14 C 0.019 3.981 15 C -0.383 4.383 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.553 5.553 19 Si 0.735 3.265 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.205 1.205 23 C -0.025 4.025 24 N -0.334 5.334 25 C -0.018 4.018 26 C -0.169 4.169 27 C -0.197 4.197 28 C 0.305 3.695 29 O -0.418 6.418 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.016 0.984 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.079 0.921 47 H 0.113 0.887 48 H 0.081 0.919 49 H 0.104 0.896 50 H 0.103 0.897 51 H 0.117 0.883 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.486 7.106 -6.371 21.698 hybrid contribution 0.880 -0.359 -0.384 1.025 sum -18.606 6.747 -6.755 20.913 Atomic orbital electron populations 1.22183 0.94383 1.03737 1.02174 1.20646 0.93527 0.96287 0.82492 0.88754 1.22206 0.93411 1.04848 0.99649 1.20467 0.89573 0.78536 0.81129 1.90607 1.70235 1.43136 1.38157 1.48202 1.08114 1.53801 1.23825 1.21839 0.95865 0.93161 0.90672 1.21999 0.97522 0.95635 1.01935 1.22111 0.92835 1.02042 1.00137 1.20571 0.84874 0.92256 0.96190 0.91927 1.43898 0.98699 1.60677 1.28212 1.20778 0.94961 0.92691 0.89689 1.19237 0.93260 1.33831 0.91959 0.91437 1.24981 0.98771 0.99993 0.95812 1.70072 1.18931 1.52942 1.13387 0.86245 0.81532 0.77921 0.80807 1.21485 1.21772 1.20510 1.22374 0.77001 1.00336 1.02770 1.48195 1.50677 1.12003 1.22502 1.22117 0.94359 0.96047 0.89306 1.22575 0.99064 0.94298 1.00974 1.22338 0.99422 1.01182 0.96710 1.20906 0.79971 0.81577 0.87078 1.90665 1.40204 1.54914 1.55966 0.92233 0.90860 0.91373 0.88258 0.87452 0.91499 0.90350 0.91794 0.91346 0.91534 0.92508 0.95263 0.93802 0.98438 0.93793 0.89368 0.92072 0.88696 0.91910 0.89558 0.89682 0.88264 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.20 37.16 0.34 -1.14 16 2 C 0.17 1.86 2.43 -67.93 -0.16 1.69 16 3 H 0.09 0.98 7.88 -51.93 -0.41 0.57 16 4 C -0.16 -1.85 3.47 -27.88 -0.10 -1.94 16 5 C 0.51 7.74 7.56 -10.98 -0.08 7.65 16 6 O -0.54 -9.45 13.02 5.56 0.07 -9.37 16 7 N -0.61 -9.29 2.97 -172.47 -0.51 -9.80 16 8 C 0.11 1.34 6.37 -3.48 -0.02 1.31 16 9 C -0.13 -1.83 6.10 -26.39 -0.16 -1.99 16 10 C -0.13 -2.36 5.14 -26.69 -0.14 -2.49 16 11 C 0.17 3.52 2.74 -67.79 -0.19 3.34 16 12 H 0.06 1.40 7.86 -51.93 -0.41 0.99 16 13 N -0.59 -14.82 2.82 -173.32 -0.49 -15.31 16 14 C 0.16 3.99 8.03 59.85 0.48 4.47 16 15 C -0.25 -7.02 9.60 -15.06 -0.14 -7.17 16 16 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 17 C 0.00 0.07 5.10 -17.43 -0.09 -0.02 16 18 N -0.91 -26.45 10.64 55.49 0.59 -25.86 16 19 Si 0.90 22.08 29.57 -169.99 -5.03 17.06 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.10 1.83 5.78 -3.69 -0.02 1.81 16 24 N -0.60 -7.02 2.20 -164.81 -0.36 -7.38 16 25 C 0.10 1.05 6.86 -3.12 -0.02 1.03 16 26 C -0.13 -1.21 7.18 -25.10 -0.18 -1.39 16 27 C -0.16 -1.57 6.86 -26.71 -0.18 -1.75 16 28 C 0.52 6.79 7.39 -10.83 -0.08 6.71 16 29 O -0.54 -8.62 15.07 5.56 0.08 -8.54 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.80 6.77 -51.93 -0.35 0.45 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.10 0.88 7.93 -51.92 -0.41 0.47 16 34 H 0.11 1.39 6.21 -51.93 -0.32 1.07 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.80 5.93 -51.93 -0.31 0.49 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.01 7.71 -51.93 -0.40 0.61 16 41 H 0.03 0.77 7.41 -51.93 -0.38 0.38 16 42 H 0.04 1.16 7.21 -51.93 -0.37 0.79 16 43 H 0.00 -0.06 6.36 -51.93 -0.33 -0.39 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.09 1.84 7.00 -51.93 -0.36 1.47 16 46 H 0.06 1.13 6.51 -51.93 -0.34 0.79 16 47 H 0.09 1.12 6.71 -51.93 -0.35 0.78 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 51 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -32.75 394.61 -9.39 -42.14 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -8.95 Total: 1.01 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -0.75 Total: 10.11 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.77 Total: -58.36 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.16 Total: -17.91 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.75 -9.39 -42.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027646243.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.964 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds