Wall clock time and date at job start Tue Mar 31 2020 20:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47273 * 2 1 4 4 C 1.53000 * 109.47488 * 120.00837 * 2 1 3 5 5 C 1.50699 * 109.47173 * 185.00115 * 4 2 1 6 6 O 1.21277 * 120.00411 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99535 * 179.97438 * 5 4 2 8 8 C 1.46931 * 120.63242 * 359.71522 * 7 5 4 9 9 C 1.53621 * 108.54127 * 126.37600 * 8 7 5 10 10 C 1.53039 * 109.24510 * 54.85230 * 9 8 7 11 11 C 1.53037 * 109.53793 * 298.51183 * 10 9 8 12 12 H 1.09003 * 109.50080 * 301.41022 * 11 10 9 13 13 N 1.46503 * 109.52306 * 181.33363 * 11 10 9 14 14 C 1.46499 * 119.99867 * 300.14838 * 13 11 10 15 15 C 1.36931 * 120.00485 * 120.14592 * 13 11 10 16 16 H 1.08002 * 119.99695 * 21.99095 * 15 13 11 17 17 C 1.38811 * 120.00481 * 201.99644 * 15 13 11 18 18 N 1.31619 * 119.99861 * 12.67706 * 17 15 13 19 19 Si 1.86802 * 120.00081 * 192.67962 * 17 15 13 20 20 H 1.48488 * 109.47082 * 89.99832 * 19 17 15 21 21 H 1.48498 * 109.46988 * 209.99831 * 19 17 15 22 22 H 1.48503 * 109.47026 * 329.99795 * 19 17 15 23 23 C 1.46930 * 120.62634 * 180.02562 * 7 5 4 24 24 N 1.46508 * 109.47222 * 240.00751 * 2 1 3 25 25 C 1.46759 * 124.35378 * 119.99694 * 24 2 1 26 26 C 1.54479 * 105.47309 * 163.00586 * 25 24 2 27 27 C 1.54627 * 101.79915 * 25.39871 * 26 25 24 28 28 C 1.34421 * 124.34167 * 300.02349 * 24 2 1 29 29 O 1.21280 * 124.95109 * 0.39094 * 28 24 2 30 30 H 1.09003 * 109.47249 * 59.99837 * 1 2 3 31 31 H 1.08997 * 109.46899 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47139 * 299.99578 * 1 2 3 33 33 H 1.09007 * 109.46706 * 304.99697 * 4 2 1 34 34 H 1.08997 * 109.47264 * 64.99376 * 4 2 1 35 35 H 1.09003 * 109.58609 * 246.20304 * 8 7 5 36 36 H 1.08994 * 109.58343 * 6.62674 * 8 7 5 37 37 H 1.09002 * 109.62941 * 294.86167 * 9 8 7 38 38 H 1.09001 * 109.42862 * 174.72859 * 9 8 7 39 39 H 1.09000 * 109.45701 * 178.49240 * 10 9 8 40 40 H 1.08999 * 109.45924 * 58.53509 * 10 9 8 41 41 H 1.08997 * 109.47297 * 94.33529 * 14 13 11 42 42 H 1.09004 * 109.47254 * 214.33603 * 14 13 11 43 43 H 1.09004 * 109.47434 * 334.33053 * 14 13 11 44 44 H 0.96994 * 119.99740 * 179.97438 * 18 17 15 45 45 H 1.08999 * 109.58707 * 353.36715 * 23 7 5 46 46 H 1.09000 * 109.58641 * 113.65718 * 23 7 5 47 47 H 1.09004 * 110.24180 * 44.00929 * 25 24 2 48 48 H 1.09000 * 110.31872 * 282.04541 * 25 24 2 49 49 H 1.08997 * 110.97024 * 143.54118 * 26 25 24 50 50 H 1.09002 * 110.96802 * 267.26061 * 26 25 24 51 51 H 1.08994 * 110.48364 * 93.89955 * 27 26 25 52 52 H 1.09001 * 110.48488 * 216.53967 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5420 -0.6150 1.3125 6 8 4.1451 -0.0211 0.4440 7 7 4.2149 -1.1799 2.3346 8 6 3.4977 -1.8973 3.3975 9 6 4.1015 -3.3035 3.5311 10 6 5.6100 -3.1851 3.7605 11 6 6.2579 -2.4954 2.5578 12 1 6.0518 -3.0695 1.6544 13 7 7.7060 -2.4107 2.7634 14 6 8.2405 -1.6866 3.9194 15 6 8.5599 -3.0083 1.8753 16 1 8.2286 -3.2258 0.8706 17 6 9.8512 -3.3348 2.2663 18 7 10.1803 -3.3052 3.5403 19 14 11.1217 -3.8162 0.9843 20 1 11.8365 -2.6020 0.5156 21 1 12.0955 -4.7635 1.5838 22 1 10.4429 -4.4658 -0.1658 23 6 5.6791 -1.0842 2.4105 24 7 2.0184 -0.6905 -1.1963 25 6 2.8655 -0.0711 -2.2222 26 6 3.4718 -1.2463 -3.0207 27 6 2.4203 -2.3574 -2.7954 28 6 1.7476 -1.9727 -1.4955 29 8 1.0639 -2.7139 -0.8216 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6055 -0.2619 2.1369 34 1 1.7517 -1.7716 1.2054 35 1 3.6064 -1.3591 4.3392 36 1 2.4419 -1.9744 3.1381 37 1 3.9157 -3.8701 2.6186 38 1 3.6439 -3.8157 4.3775 39 1 6.0380 -4.1801 3.8825 40 1 5.7956 -2.5975 4.6595 41 1 8.4172 -2.3862 4.7364 42 1 9.1788 -1.2048 3.6442 43 1 7.5233 -0.9300 4.2376 44 1 11.0825 -3.5337 3.8135 45 1 6.0630 -0.6248 1.4996 46 1 5.9616 -0.4791 3.2720 47 1 3.6566 0.5151 -1.7545 48 1 2.2658 0.5606 -2.8775 49 1 3.5557 -0.9971 -4.0785 50 1 4.4399 -1.5368 -2.6126 51 1 1.6968 -2.3688 -3.6105 52 1 2.9059 -3.3288 -2.7016 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027646243.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:02 Heat of formation + Delta-G solvation = -64.446468 kcal Electronic energy + Delta-G solvation = -31550.216239 eV Core-core repulsion = 27549.489512 eV Total energy + Delta-G solvation = -4000.726727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.76876 -40.86077 -38.91977 -37.33253 -36.74820 -35.80464 -33.96971 -32.87231 -31.33812 -30.50280 -28.90462 -28.37386 -28.07727 -26.12293 -25.27978 -23.54944 -23.07819 -22.78137 -21.23029 -20.08617 -19.54941 -18.80102 -18.16763 -17.80641 -17.40394 -17.13532 -16.81390 -16.23615 -15.95028 -15.67999 -15.41144 -15.23166 -14.97358 -14.75734 -14.63461 -14.52144 -14.40426 -13.99872 -13.90291 -13.74343 -13.69296 -13.54510 -12.96291 -12.89842 -12.84361 -12.78312 -12.67055 -12.54397 -12.40269 -12.33047 -12.15983 -12.04826 -11.96130 -11.85047 -11.81316 -11.68840 -11.42185 -10.75898 -10.65177 -10.58493 -9.67976 -9.60882 -8.78769 -7.86062 -5.34132 1.42794 1.44287 1.52798 1.61223 1.65965 2.00262 2.14400 2.48547 3.26569 3.42347 3.52557 3.58634 3.67619 3.82353 3.94052 4.01738 4.05006 4.09345 4.14983 4.20593 4.26762 4.33138 4.37415 4.50863 4.57456 4.64859 4.68834 4.71347 4.74399 4.76049 4.81409 4.84371 4.88642 4.95618 4.97348 5.01245 5.03584 5.10115 5.22837 5.25058 5.29418 5.40981 5.44123 5.51975 5.60838 5.69829 5.72295 6.25478 6.29175 6.48520 7.11681 7.20898 7.23568 7.83085 8.25596 9.16509 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.003461 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.557408 B = 8087.579051 C = 9247.139209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.165 3.835 3 H 0.099 0.901 4 C -0.150 4.150 5 C 0.508 3.492 6 O -0.572 6.572 7 N -0.610 5.610 8 C 0.107 3.893 9 C -0.123 4.123 10 C -0.122 4.122 11 C 0.170 3.830 12 H 0.036 0.964 13 N -0.610 5.610 14 C 0.182 3.818 15 C -0.267 4.267 16 H 0.060 0.940 17 C -0.047 4.047 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.272 1.272 23 C 0.118 3.882 24 N -0.602 5.602 25 C 0.103 3.897 26 C -0.125 4.125 27 C -0.153 4.153 28 C 0.503 3.497 29 O -0.575 6.575 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.135 0.865 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.051 0.949 38 H 0.101 0.899 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.006 0.994 42 H 0.014 0.986 43 H 0.030 0.970 44 H 0.249 0.751 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.118 0.882 50 H 0.058 0.942 51 H 0.125 0.875 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.072 8.141 -6.755 24.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.062 3.938 3 H 0.117 0.883 4 C -0.190 4.190 5 C 0.298 3.702 6 O -0.452 6.452 7 N -0.343 5.343 8 C -0.015 4.015 9 C -0.162 4.162 10 C -0.161 4.161 11 C 0.062 3.938 12 H 0.055 0.945 13 N -0.333 5.333 14 C 0.037 3.963 15 C -0.397 4.397 16 H 0.078 0.922 17 C -0.242 4.242 18 N -0.581 5.581 19 Si 0.795 3.205 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.197 1.197 23 C -0.007 4.007 24 N -0.334 5.334 25 C -0.019 4.019 26 C -0.163 4.163 27 C -0.193 4.193 28 C 0.292 3.708 29 O -0.456 6.456 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.153 0.847 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.025 0.975 42 H 0.033 0.967 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.111 0.889 49 H 0.136 0.864 50 H 0.077 0.923 51 H 0.143 0.857 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.960 8.104 -6.720 24.353 hybrid contribution 1.609 -0.633 -0.302 1.755 sum -20.351 7.472 -7.021 22.788 Atomic orbital electron populations 1.22089 0.92613 1.02828 1.03791 1.20859 0.94834 0.96223 0.81856 0.88266 1.22212 0.90322 1.04677 1.01770 1.21186 0.91084 0.77688 0.80272 1.90605 1.71153 1.44329 1.39069 1.48278 1.06642 1.54357 1.25002 1.22095 0.96928 0.91725 0.90717 1.21947 0.94376 0.97181 1.02704 1.21926 0.95624 0.99977 0.98586 1.20674 0.83055 0.93714 0.96390 0.94515 1.44091 1.00377 1.60841 1.27945 1.20484 0.94577 0.92511 0.88713 1.19465 0.94235 1.33663 0.92306 0.92194 1.25696 1.00418 1.00497 0.97635 1.70219 1.19005 1.53992 1.14883 0.85277 0.79024 0.77519 0.78709 1.21164 1.21699 1.19733 1.21832 0.79427 0.98106 1.01346 1.48386 1.50213 1.11830 1.22988 1.22215 0.94128 0.96305 0.89287 1.22565 0.97389 0.93696 1.02610 1.22379 0.99855 1.00934 0.96139 1.21422 0.79763 0.81790 0.87826 1.90634 1.41917 1.55819 1.57246 0.91518 0.92871 0.88920 0.84690 0.88465 0.89286 0.87212 0.93019 0.88109 0.94253 0.92036 0.97542 0.96670 0.95141 0.94150 0.92336 0.91666 0.90818 0.88933 0.86369 0.92314 0.85653 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.20 71.98 0.66 -1.69 16 2 C 0.17 3.21 2.43 44.99 0.11 3.31 16 3 H 0.10 1.84 7.88 -2.39 -0.02 1.83 16 4 C -0.15 -3.09 3.47 29.85 0.10 -2.99 16 5 C 0.51 14.69 7.56 87.66 0.66 15.36 16 6 O -0.57 -19.93 13.02 -3.02 -0.04 -19.97 16 7 N -0.61 -17.89 2.97 -817.97 -2.43 -20.31 16 8 C 0.11 2.32 6.37 86.51 0.55 2.87 16 9 C -0.12 -3.17 6.10 30.82 0.19 -2.99 16 10 C -0.12 -4.33 5.14 30.62 0.16 -4.17 16 11 C 0.17 7.19 2.74 45.08 0.12 7.31 16 12 H 0.04 1.72 7.86 -2.39 -0.02 1.70 16 13 N -0.61 -31.46 2.82 -702.26 -1.98 -33.44 16 14 C 0.18 9.09 8.03 127.77 1.03 10.12 16 15 C -0.27 -15.27 9.60 84.03 0.81 -14.47 16 16 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 17 C -0.05 -2.70 5.10 84.86 0.43 -2.27 16 18 N -0.93 -55.92 10.64 21.65 0.23 -55.69 16 19 Si 0.97 46.33 29.57 68.60 2.03 48.36 16 20 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 23 C 0.12 4.37 5.78 86.38 0.50 4.87 16 24 N -0.60 -13.38 2.20 -793.94 -1.75 -15.13 16 25 C 0.10 1.94 6.86 86.83 0.60 2.54 16 26 C -0.12 -2.18 7.18 31.65 0.23 -1.95 16 27 C -0.15 -2.92 6.86 30.61 0.21 -2.71 16 28 C 0.50 12.88 7.39 87.92 0.65 13.53 16 29 O -0.58 -18.21 15.07 -3.03 -0.05 -18.26 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 1.06 6.77 -2.39 -0.02 1.04 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.14 1.81 7.93 -2.38 -0.02 1.79 16 34 H 0.10 2.32 6.21 -2.39 -0.01 2.31 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 1.77 5.93 -2.39 -0.01 1.75 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.06 2.13 7.71 -2.39 -0.02 2.11 16 41 H 0.01 0.34 7.41 -2.39 -0.02 0.32 16 42 H 0.01 0.81 7.21 -2.39 -0.02 0.79 16 43 H 0.03 1.29 6.36 -2.38 -0.02 1.27 16 44 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 45 H 0.06 2.52 7.00 -2.39 -0.02 2.50 16 46 H 0.07 2.36 6.51 -2.39 -0.02 2.34 16 47 H 0.07 1.74 6.71 -2.38 -0.02 1.72 16 48 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -75.09 394.61 3.92 -71.17 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.90 Total: 16.61 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: 7.01 Total: 26.66 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -5.92 Total: -124.57 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.08 Total: -38.23 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -75.09 3.92 -71.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027646243.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.723 kcal (2) G-P(sol) polarization free energy of solvation -75.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds