Wall clock time and date at job start Tue Mar 31 2020 20:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47342 * 2 1 4 4 C 1.53005 * 109.47052 * 240.00071 * 2 1 3 5 5 C 1.50702 * 109.47230 * 175.00109 * 4 2 1 6 6 O 1.21279 * 119.99710 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00134 * 179.97438 * 5 4 2 8 8 C 1.46925 * 120.62996 * 0.02570 * 7 5 4 9 9 C 1.53192 * 108.77503 * 126.36590 * 8 7 5 10 10 C 1.53036 * 109.31289 * 54.63773 * 9 8 7 11 11 C 1.53078 * 109.65403 * 298.69691 * 10 9 8 12 12 H 1.09002 * 109.39081 * 301.27719 * 11 10 9 13 13 N 1.46506 * 109.61683 * 181.17028 * 11 10 9 14 14 C 1.46492 * 120.00167 * 300.10344 * 13 11 10 15 15 C 1.36943 * 119.99704 * 120.10839 * 13 11 10 16 16 H 1.07998 * 119.99572 * 21.98813 * 15 13 11 17 17 C 1.38812 * 119.99834 * 201.98681 * 15 13 11 18 18 N 1.31621 * 120.00006 * 12.69122 * 17 15 13 19 19 Si 1.86798 * 119.99733 * 192.69030 * 17 15 13 20 20 H 1.48498 * 109.47118 * 90.00244 * 19 17 15 21 21 H 1.48500 * 109.46742 * 210.00058 * 19 17 15 22 22 H 1.48499 * 109.47488 * 330.00035 * 19 17 15 23 23 C 1.46927 * 120.63091 * 179.97438 * 7 5 4 24 24 N 1.46505 * 109.47365 * 120.00223 * 2 1 3 25 25 C 1.46763 * 124.34831 * 239.72694 * 24 2 1 26 26 C 1.54662 * 105.37934 * 162.85167 * 25 24 2 27 27 C 1.54622 * 101.68542 * 25.76290 * 26 25 24 28 28 C 1.34419 * 124.34432 * 60.02044 * 24 2 1 29 29 O 1.21277 * 124.95049 * 0.43050 * 28 24 2 30 30 H 1.08999 * 109.46864 * 300.00197 * 1 2 3 31 31 H 1.09001 * 109.46941 * 60.00004 * 1 2 3 32 32 H 1.08998 * 109.47342 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46773 * 54.99886 * 4 2 1 34 34 H 1.09002 * 109.47293 * 294.99985 * 4 2 1 35 35 H 1.09005 * 109.58871 * 246.15794 * 8 7 5 36 36 H 1.09007 * 109.58859 * 6.57615 * 8 7 5 37 37 H 1.09004 * 109.49656 * 174.58498 * 9 8 7 38 38 H 1.08993 * 109.49772 * 294.67867 * 9 8 7 39 39 H 1.09000 * 109.46431 * 58.64936 * 10 9 8 40 40 H 1.08994 * 109.46120 * 178.62611 * 10 9 8 41 41 H 1.09006 * 109.46958 * 94.34299 * 14 13 11 42 42 H 1.09003 * 109.47340 * 214.33882 * 14 13 11 43 43 H 1.08996 * 109.47741 * 334.34042 * 14 13 11 44 44 H 0.96992 * 119.99939 * 179.97438 * 18 17 15 45 45 H 1.08994 * 109.58684 * 353.41999 * 23 7 5 46 46 H 1.08996 * 109.58485 * 113.70489 * 23 7 5 47 47 H 1.08997 * 110.24360 * 281.97838 * 25 24 2 48 48 H 1.08997 * 110.24577 * 43.98078 * 25 24 2 49 49 H 1.08998 * 111.18845 * 267.59295 * 26 25 24 50 50 H 1.08996 * 110.85003 * 143.78905 * 26 25 24 51 51 H 1.09006 * 110.48852 * 216.30801 * 27 26 25 52 52 H 1.09004 * 110.48875 * 93.67023 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 8 4.1450 -0.0212 -0.4441 7 7 4.2150 -1.1806 -2.3344 8 6 3.4983 -1.9035 -3.3938 9 6 3.9098 -1.3245 -4.7511 10 6 5.4341 -1.3698 -4.8796 11 6 6.0692 -0.5174 -3.7782 12 1 5.7102 0.5084 -3.8621 13 7 7.5274 -0.5388 -3.9188 14 6 8.2518 -1.8099 -3.8441 15 6 8.2131 0.6294 -4.1201 16 1 7.7714 1.5714 -3.8306 17 6 9.4757 0.6026 -4.6961 18 7 9.9122 -0.4964 -5.2741 19 14 10.5554 2.1263 -4.6510 20 1 11.3880 2.1068 -3.4215 21 1 11.4371 2.1436 -5.8457 22 1 9.6994 3.3397 -4.6499 23 6 5.6791 -1.0849 -2.4103 24 7 2.0184 -0.6907 1.1962 25 6 2.8704 -0.0730 2.2192 26 6 2.7606 -0.9952 3.4559 27 6 2.4041 -2.3514 2.8046 28 6 1.7484 -1.9732 1.4947 29 8 1.0771 -2.7186 0.8132 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6053 -0.2617 -2.1370 34 1 1.7516 -1.7715 -1.2057 35 1 3.7577 -2.9615 -3.3541 36 1 2.4237 -1.7833 -3.2558 37 1 3.4597 -1.9141 -5.5497 38 1 3.5690 -0.2918 -4.8244 39 1 5.7763 -2.4000 -4.7814 40 1 5.7281 -0.9809 -5.8544 41 1 8.3993 -2.2037 -4.8497 42 1 9.2207 -1.6486 -3.3714 43 1 7.6748 -2.5231 -3.2556 44 1 10.7943 -0.5150 -5.6769 45 1 6.0435 -0.4246 -1.6234 46 1 6.1168 -2.0756 -2.2877 47 1 3.9023 -0.0247 1.8717 48 1 2.5059 0.9254 2.4610 49 1 1.9670 -0.6635 4.1254 50 1 3.7133 -1.0535 3.9821 51 1 1.7076 -2.9056 3.4338 52 1 3.3057 -2.9370 2.6247 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027646244.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:06 Heat of formation + Delta-G solvation = -45.402298 kcal Electronic energy + Delta-G solvation = -31199.096794 eV Core-core repulsion = 27199.195885 eV Total energy + Delta-G solvation = -3999.900909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.81383 -39.70186 -37.49197 -36.38158 -35.07222 -34.96428 -32.32562 -31.32440 -30.33801 -29.15283 -27.82439 -27.59431 -26.00784 -24.87291 -23.58853 -22.62544 -22.06407 -21.62069 -19.81730 -18.89240 -18.43115 -17.07428 -16.95165 -16.69768 -16.56233 -15.72479 -15.28813 -15.06551 -14.74481 -14.20753 -14.03961 -13.93652 -13.81701 -13.77654 -13.62754 -13.38325 -13.06212 -12.77364 -12.66775 -12.62036 -12.38311 -12.15929 -12.07990 -11.90861 -11.78022 -11.68255 -11.31229 -11.16927 -11.01963 -10.92554 -10.84116 -10.63403 -10.39989 -10.29558 -10.11278 -9.87395 -9.77831 -9.68411 -9.47342 -8.74417 -8.60274 -8.29918 -6.76162 -5.72031 -3.17923 2.53272 2.82612 2.93099 3.20995 3.39242 3.45612 3.46830 4.21389 4.34223 4.49384 4.54019 4.63098 4.68407 4.87928 4.97401 5.04266 5.12996 5.18081 5.32773 5.33826 5.37168 5.44730 5.45687 5.46985 5.52094 5.55733 5.58196 5.62735 5.63151 5.73839 5.82044 5.87852 5.93882 5.99010 6.02074 6.17843 6.24023 6.39755 6.51923 6.53280 6.67953 6.81061 6.94959 7.01018 7.10983 7.39061 7.67597 7.72701 7.81792 8.12775 8.37370 8.42953 9.23804 9.86528 10.34764 11.32761 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015951 B = 0.002908 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.924169 B = 9627.539110 C =10319.304672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.173 3.827 3 H 0.095 0.905 4 C -0.160 4.160 5 C 0.515 3.485 6 O -0.544 6.544 7 N -0.606 5.606 8 C 0.108 3.892 9 C -0.132 4.132 10 C -0.132 4.132 11 C 0.170 3.830 12 H 0.063 0.937 13 N -0.593 5.593 14 C 0.163 3.837 15 C -0.254 4.254 16 H 0.068 0.932 17 C 0.002 3.998 18 N -0.908 5.908 19 Si 0.905 3.095 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.098 3.902 24 N -0.600 5.600 25 C 0.105 3.895 26 C -0.133 4.133 27 C -0.156 4.156 28 C 0.516 3.484 29 O -0.541 6.541 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.029 0.971 42 H 0.043 0.957 43 H -0.003 1.003 44 H 0.252 0.748 45 H 0.088 0.912 46 H 0.060 0.940 47 H 0.088 0.912 48 H 0.073 0.927 49 H 0.078 0.922 50 H 0.088 0.912 51 H 0.097 0.903 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.010 -2.128 12.359 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.114 0.886 4 C -0.201 4.201 5 C 0.303 3.697 6 O -0.422 6.422 7 N -0.339 5.339 8 C -0.015 4.015 9 C -0.170 4.170 10 C -0.172 4.172 11 C 0.061 3.939 12 H 0.081 0.919 13 N -0.315 5.315 14 C 0.019 3.981 15 C -0.384 4.384 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.553 5.553 19 Si 0.736 3.264 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.205 1.205 23 C -0.025 4.025 24 N -0.333 5.333 25 C -0.018 4.018 26 C -0.171 4.171 27 C -0.196 4.196 28 C 0.304 3.696 29 O -0.419 6.419 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.016 0.984 44 H 0.062 0.938 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.107 0.893 48 H 0.091 0.909 49 H 0.097 0.903 50 H 0.107 0.893 51 H 0.116 0.884 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.849 -2.174 12.308 22.616 hybrid contribution 0.812 0.689 -0.274 1.100 sum -18.037 -1.485 12.034 21.733 Atomic orbital electron populations 1.22177 0.94313 1.03677 1.02266 1.20663 0.93549 0.96391 0.82407 0.88645 1.22205 0.93418 1.04768 0.99714 1.20469 0.89576 0.78393 0.81289 1.90616 1.70261 1.42917 1.38389 1.48188 1.08188 1.53887 1.23628 1.21749 0.96220 0.96076 0.87483 1.21928 0.98098 1.01232 0.95786 1.22121 0.92627 1.01121 1.01340 1.20557 0.85379 0.97344 0.90621 0.91857 1.43893 0.99105 1.04715 1.83751 1.20780 0.94152 0.85028 0.98189 1.19245 0.99002 0.86057 1.34057 0.91390 1.24990 0.99221 0.97204 0.98180 1.70074 1.18869 1.26759 1.39590 0.86237 0.80563 0.82567 0.77078 1.21483 1.21782 1.20511 1.22356 0.77183 1.01746 1.01244 1.48208 1.50013 1.12180 1.22921 1.22185 0.96586 0.96506 0.86534 1.22639 1.03178 0.94142 0.97092 1.22326 1.02704 0.98971 0.95627 1.20856 0.79723 0.81601 0.87446 1.90666 1.40456 1.54616 1.56134 0.92213 0.91272 0.90927 0.88084 0.87546 0.91570 0.90347 0.91290 0.91822 0.92516 0.91512 0.95245 0.93794 0.98426 0.93782 0.89346 0.92153 0.89336 0.90860 0.90336 0.89316 0.88449 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 9.20 37.16 0.34 -1.14 16 2 C 0.17 1.86 2.43 -67.93 -0.17 1.69 16 3 H 0.10 1.02 7.88 -51.93 -0.41 0.61 16 4 C -0.16 -1.85 3.47 -27.88 -0.10 -1.95 16 5 C 0.51 7.78 7.56 -10.99 -0.08 7.70 16 6 O -0.54 -9.55 13.04 5.56 0.07 -9.48 16 7 N -0.61 -9.33 2.97 -172.79 -0.51 -9.84 16 8 C 0.11 1.34 6.34 -3.71 -0.02 1.32 16 9 C -0.13 -1.73 6.08 -26.61 -0.16 -1.90 16 10 C -0.13 -2.33 5.15 -26.67 -0.14 -2.47 16 11 C 0.17 3.48 2.74 -67.81 -0.19 3.30 16 12 H 0.06 1.37 7.86 -51.93 -0.41 0.96 16 13 N -0.59 -14.77 2.82 -173.35 -0.49 -15.26 16 14 C 0.16 3.99 8.03 59.84 0.48 4.47 16 15 C -0.25 -7.02 9.60 -15.06 -0.14 -7.16 16 16 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 17 C 0.00 0.06 5.10 -17.43 -0.09 -0.03 16 18 N -0.91 -26.40 10.64 55.49 0.59 -25.81 16 19 Si 0.91 22.03 29.57 -169.99 -5.03 17.00 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 C 0.10 1.83 5.78 -3.73 -0.02 1.81 16 24 N -0.60 -6.77 2.21 -164.73 -0.36 -7.13 16 25 C 0.10 1.00 6.82 -3.02 -0.02 0.98 16 26 C -0.13 -0.94 7.19 -25.00 -0.18 -1.12 16 27 C -0.16 -1.39 6.86 -26.74 -0.18 -1.58 16 28 C 0.52 6.38 7.39 -10.86 -0.08 6.30 16 29 O -0.54 -8.24 15.07 5.56 0.08 -8.16 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.78 6.80 -51.93 -0.35 0.42 16 33 H 0.10 0.94 7.69 -51.93 -0.40 0.54 16 34 H 0.11 1.34 6.42 -51.93 -0.33 1.00 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.78 5.93 -51.93 -0.31 0.48 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 1.01 7.71 -51.93 -0.40 0.61 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.03 0.77 7.41 -51.93 -0.38 0.39 16 42 H 0.04 1.17 7.21 -51.93 -0.37 0.79 16 43 H 0.00 -0.06 6.36 -51.93 -0.33 -0.39 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.09 1.85 7.00 -51.93 -0.36 1.48 16 46 H 0.06 1.14 6.49 -51.93 -0.34 0.80 16 47 H 0.09 1.05 6.78 -51.93 -0.35 0.70 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 51 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 394.63 15.07 5.95 5.95 Total: -1.00 -32.80 394.63 -9.40 -42.20 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -8.95 Total: 0.30 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -0.75 Total: 10.22 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.78 Total: -58.04 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: 0.16 Total: -17.64 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.80 -9.40 -42.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027646244.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.199 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds