Wall clock time and date at job start Tue Mar 31 2020 20:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47644 * 2 1 4 4 C 1.53002 * 109.46877 * 239.99697 * 2 1 3 5 5 C 1.50697 * 109.46982 * 175.00183 * 4 2 1 6 6 O 1.21286 * 120.00237 * 359.97438 * 5 4 2 7 7 N 1.34781 * 120.00216 * 180.02562 * 5 4 2 8 8 C 1.46927 * 120.62655 * 359.97438 * 7 5 4 9 9 C 1.53188 * 108.77724 * 233.58954 * 8 7 5 10 10 C 1.53045 * 109.31325 * 305.36836 * 9 8 7 11 11 C 1.53039 * 109.53835 * 61.36527 * 10 9 8 12 12 H 1.09009 * 109.49934 * 58.58473 * 11 10 9 13 13 N 1.46493 * 109.49856 * 178.68323 * 11 10 9 14 14 C 1.46499 * 120.00235 * 60.00104 * 13 11 10 15 15 C 1.36935 * 120.00135 * 239.99842 * 13 11 10 16 16 H 1.07998 * 120.00005 * 22.06758 * 15 13 11 17 17 C 1.38815 * 120.00281 * 202.06855 * 15 13 11 18 18 N 1.31621 * 119.99896 * 12.40428 * 17 15 13 19 19 Si 1.86801 * 120.00059 * 192.40592 * 17 15 13 20 20 H 1.48493 * 109.47312 * 59.99534 * 19 17 15 21 21 H 1.48500 * 109.46787 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46681 * 299.99502 * 19 17 15 23 23 C 1.46929 * 120.63252 * 179.72109 * 7 5 4 24 24 N 1.46509 * 109.47098 * 120.00154 * 2 1 3 25 25 C 1.46760 * 124.34630 * 240.04650 * 24 2 1 26 26 C 1.54835 * 105.49052 * 197.01582 * 25 24 2 27 27 C 1.54626 * 101.60365 * 334.56674 * 26 25 24 28 28 C 1.34417 * 124.34679 * 60.02467 * 24 2 1 29 29 O 1.21279 * 124.94886 * 359.64345 * 28 24 2 30 30 H 1.09002 * 109.46891 * 299.99812 * 1 2 3 31 31 H 1.09003 * 109.47087 * 59.99836 * 1 2 3 32 32 H 1.08997 * 109.47215 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47578 * 294.99863 * 4 2 1 34 34 H 1.08999 * 109.46662 * 55.00610 * 4 2 1 35 35 H 1.09000 * 109.58848 * 353.38288 * 8 7 5 36 36 H 1.08999 * 109.58376 * 113.66251 * 8 7 5 37 37 H 1.09001 * 109.49939 * 65.31934 * 9 8 7 38 38 H 1.08997 * 109.50141 * 185.38565 * 9 8 7 39 39 H 1.09001 * 109.45758 * 181.38134 * 10 9 8 40 40 H 1.09000 * 109.45855 * 301.34242 * 10 9 8 41 41 H 1.09000 * 109.47389 * 94.30059 * 14 13 11 42 42 H 1.09000 * 109.46993 * 214.30782 * 14 13 11 43 43 H 1.09010 * 109.46724 * 334.30386 * 14 13 11 44 44 H 0.96996 * 120.00227 * 180.02562 * 18 17 15 45 45 H 1.08994 * 109.58135 * 246.19608 * 23 7 5 46 46 H 1.08998 * 109.58342 * 6.62239 * 23 7 5 47 47 H 1.08996 * 110.24848 * 315.99136 * 25 24 2 48 48 H 1.08998 * 110.24945 * 77.90673 * 25 24 2 49 49 H 1.09004 * 111.08036 * 216.48825 * 26 25 24 50 50 H 1.09004 * 111.01438 * 92.61909 * 26 25 24 51 51 H 1.08997 * 110.48954 * 266.07735 * 27 26 25 52 52 H 1.09007 * 110.48344 * 143.57043 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5418 -0.6151 -1.3127 6 8 4.1450 -0.0205 -0.4446 7 7 4.2148 -1.1798 -2.3348 8 6 3.4981 -1.9029 -3.3942 9 6 4.1021 -3.3041 -3.5304 10 6 5.6105 -3.1849 -3.7603 11 6 6.2585 -2.4944 -2.5581 12 1 6.0529 -3.0683 -1.6544 13 7 7.7062 -2.4090 -2.7651 14 6 8.2395 -1.6823 -3.9199 15 6 8.5611 -3.0085 -1.8791 16 1 8.2117 -3.8175 -1.2548 17 6 9.8768 -2.5763 -1.7833 18 7 10.2417 -1.4473 -2.3530 19 14 11.1293 -3.5970 -0.8459 20 1 11.2375 -4.9412 -1.4676 21 1 12.4513 -2.9221 -0.8911 22 1 10.6945 -3.7387 0.5670 23 6 5.6786 -1.0795 -2.4137 24 7 2.0184 -0.6907 1.1962 25 6 2.8648 -0.0710 2.2226 26 6 3.4737 -1.2485 3.0227 27 6 2.4202 -2.3571 2.7947 28 6 1.7484 -1.9732 1.4948 29 8 1.0660 -2.7148 0.8200 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7516 -1.7716 -1.2056 34 1 1.6053 -0.2617 -2.1369 35 1 2.4431 -1.9835 -3.1323 36 1 3.6005 -1.3654 -4.3370 37 1 3.9168 -3.8704 -2.6177 38 1 3.6441 -3.8171 -4.3761 39 1 6.0389 -4.1798 -3.8820 40 1 5.7954 -2.5976 -4.6597 41 1 8.4721 -0.6579 -3.6288 42 1 9.1459 -2.1747 -4.2721 43 1 7.4972 -1.6735 -4.7181 44 1 11.1611 -1.1455 -2.2864 45 1 5.9574 -0.4775 -3.2785 46 1 6.0625 -0.6168 -1.5046 47 1 3.6556 0.5158 1.7555 48 1 2.2635 0.5604 2.8767 49 1 3.5574 -1.0016 4.0811 50 1 4.4413 -1.5398 2.6140 51 1 1.6962 -2.3688 3.6095 52 1 2.9038 -3.3296 2.7015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027646246.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:13 Heat of formation + Delta-G solvation = -45.169749 kcal Electronic energy + Delta-G solvation = -31608.383774 eV Core-core repulsion = 27608.492948 eV Total energy + Delta-G solvation = -3999.890825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.72887 -39.62297 -37.45321 -36.27880 -35.04704 -34.88874 -32.33195 -31.25230 -30.26146 -29.11378 -27.78530 -27.47049 -25.99758 -24.85147 -23.56041 -22.55736 -21.95176 -21.63363 -19.76418 -18.80564 -18.40590 -17.04564 -16.84591 -16.70064 -16.41984 -15.81671 -15.11930 -14.94954 -14.71757 -14.12392 -14.07881 -13.90888 -13.75729 -13.67068 -13.51198 -13.36300 -12.95417 -12.79253 -12.69829 -12.59158 -12.35696 -12.04271 -11.97592 -11.81466 -11.74723 -11.55021 -11.26966 -11.09762 -11.01271 -10.96232 -10.77808 -10.58739 -10.39168 -10.33286 -10.17036 -9.83879 -9.74324 -9.59572 -9.41770 -8.67705 -8.56652 -8.25934 -6.74976 -5.71310 -3.16970 2.60867 2.88962 3.02000 3.26852 3.40424 3.45140 3.46565 4.31399 4.49227 4.50580 4.59791 4.69804 4.84315 4.94726 5.00770 5.08401 5.18080 5.19011 5.33194 5.36433 5.43806 5.45224 5.47134 5.54720 5.56579 5.57672 5.62817 5.77100 5.78653 5.81287 5.85127 5.93742 6.01694 6.04689 6.06639 6.16912 6.26451 6.41054 6.52471 6.60291 6.71736 6.80700 6.94888 7.01723 7.18917 7.39593 7.72520 7.74052 7.81965 8.21390 8.39861 8.48523 9.24650 9.87359 10.35864 11.33478 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.003584 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.482782 B = 7811.200527 C = 8949.739847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.173 3.827 3 H 0.094 0.906 4 C -0.160 4.160 5 C 0.513 3.487 6 O -0.541 6.541 7 N -0.608 5.608 8 C 0.108 3.892 9 C -0.131 4.131 10 C -0.133 4.133 11 C 0.170 3.830 12 H 0.062 0.938 13 N -0.592 5.592 14 C 0.163 3.837 15 C -0.255 4.255 16 H 0.067 0.933 17 C 0.004 3.996 18 N -0.907 5.907 19 Si 0.905 3.095 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.100 3.900 24 N -0.600 5.600 25 C 0.104 3.896 26 C -0.131 4.131 27 C -0.157 4.157 28 C 0.517 3.483 29 O -0.541 6.541 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.044 0.956 43 H -0.002 1.002 44 H 0.253 0.747 45 H 0.059 0.941 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.063 0.937 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.099 0.901 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.635 3.070 3.795 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.113 0.887 4 C -0.201 4.201 5 C 0.301 3.699 6 O -0.419 6.419 7 N -0.341 5.341 8 C -0.015 4.015 9 C -0.170 4.170 10 C -0.173 4.173 11 C 0.061 3.939 12 H 0.081 0.919 13 N -0.314 5.314 14 C 0.018 3.982 15 C -0.385 4.385 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.552 5.552 19 Si 0.735 3.265 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.209 1.209 23 C -0.023 4.023 24 N -0.333 5.333 25 C -0.019 4.019 26 C -0.169 4.169 27 C -0.197 4.197 28 C 0.305 3.695 29 O -0.419 6.419 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.017 0.983 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.108 0.892 47 H 0.113 0.887 48 H 0.081 0.919 49 H 0.105 0.895 50 H 0.104 0.896 51 H 0.117 0.883 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.463 3.142 3.825 20.082 hybrid contribution 0.864 -0.451 0.341 1.033 sum -18.598 2.691 4.165 19.248 Atomic orbital electron populations 1.22181 0.94407 1.03697 1.02159 1.20650 0.93496 0.96328 0.82515 0.88743 1.22204 0.93528 1.04762 0.99602 1.20479 0.89516 0.78626 0.81252 1.90623 1.70198 1.42969 1.38109 1.48298 1.08340 1.53600 1.23870 1.21720 0.95903 0.93017 0.90884 1.21892 0.97252 0.95884 1.01942 1.22084 0.93200 1.01607 1.00360 1.20690 0.84858 0.92684 0.95701 0.91926 1.43929 0.98838 1.62456 1.26153 1.20782 0.94760 0.96545 0.86086 1.19180 0.91523 1.11088 1.16696 0.91503 1.25005 0.98533 0.96235 0.99693 1.70060 1.17259 1.20005 1.47888 0.86328 0.80777 0.79595 0.79798 1.21094 1.21613 1.20936 1.22566 0.76535 1.00331 1.02893 1.48193 1.50652 1.11981 1.22485 1.22184 0.94370 0.96037 0.89292 1.22636 0.99041 0.94243 1.00955 1.22324 0.99441 1.01212 0.96702 1.20884 0.79939 0.81583 0.87081 1.90659 1.40332 1.54925 1.55965 0.92244 0.91388 0.90885 0.87518 0.88314 0.90403 0.91602 0.91783 0.91292 0.91770 0.92298 0.95380 0.93738 0.98330 0.93696 0.92295 0.89190 0.88655 0.91899 0.89535 0.89611 0.88295 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 9.20 37.16 0.34 -1.20 16 2 C 0.17 1.94 2.43 -67.92 -0.16 1.77 16 3 H 0.09 1.03 7.88 -51.93 -0.41 0.62 16 4 C -0.16 -1.91 3.47 -27.88 -0.10 -2.01 16 5 C 0.51 8.06 7.56 -10.98 -0.08 7.98 16 6 O -0.54 -9.96 13.02 5.55 0.07 -9.89 16 7 N -0.61 -9.64 2.97 -172.52 -0.51 -10.15 16 8 C 0.11 1.35 6.34 -3.71 -0.02 1.32 16 9 C -0.13 -1.75 6.08 -26.61 -0.16 -1.91 16 10 C -0.13 -2.25 5.13 -26.69 -0.14 -2.39 16 11 C 0.17 3.52 2.75 -67.60 -0.19 3.34 16 12 H 0.06 1.40 7.86 -51.92 -0.41 0.99 16 13 N -0.59 -14.80 2.82 -173.10 -0.49 -15.29 16 14 C 0.16 3.97 7.91 59.85 0.47 4.45 16 15 C -0.26 -7.07 9.60 -15.06 -0.14 -7.22 16 16 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 17 C 0.00 0.10 5.11 -17.43 -0.09 0.02 16 18 N -0.91 -26.51 10.63 55.49 0.59 -25.92 16 19 Si 0.91 22.05 29.57 -169.99 -5.03 17.02 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.10 1.96 5.81 -3.50 -0.02 1.94 16 24 N -0.60 -7.31 2.20 -164.62 -0.36 -7.67 16 25 C 0.10 1.11 6.87 -2.93 -0.02 1.09 16 26 C -0.13 -1.28 7.21 -24.91 -0.18 -1.46 16 27 C -0.16 -1.63 6.85 -26.74 -0.18 -1.82 16 28 C 0.52 6.98 7.39 -10.86 -0.08 6.90 16 29 O -0.54 -8.76 15.07 5.56 0.08 -8.68 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.81 6.78 -51.93 -0.35 0.46 16 33 H 0.11 1.41 6.19 -51.93 -0.32 1.09 16 34 H 0.10 0.91 7.94 -51.93 -0.41 0.50 16 35 H 0.08 0.80 5.93 -51.93 -0.31 0.49 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.06 0.99 6.71 -51.93 -0.35 0.64 16 41 H 0.03 0.74 7.41 -51.93 -0.39 0.36 16 42 H 0.04 1.17 7.20 -51.93 -0.37 0.80 16 43 H 0.00 -0.04 6.46 -51.92 -0.34 -0.37 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.06 1.16 7.52 -51.93 -0.39 0.77 16 46 H 0.09 2.06 7.00 -51.93 -0.36 1.69 16 47 H 0.10 1.21 6.72 -51.93 -0.35 0.86 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 52 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -32.87 394.61 -9.41 -42.28 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.95 Total: 1.56 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -0.76 Total: 10.79 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.77 Total: -59.03 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.16 Total: -18.57 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.87 -9.41 -42.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027646246.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.893 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds