Wall clock time and date at job start Tue Mar 31 2020 20:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47272 * 2 1 4 4 C 1.53008 * 109.46918 * 240.00072 * 2 1 3 5 5 N 1.46902 * 109.46753 * 174.55790 * 4 2 1 6 6 C 1.47011 * 111.00031 * 287.71001 * 5 4 2 7 7 C 1.53096 * 109.26043 * 177.60817 * 6 5 4 8 8 O 1.43025 * 109.25613 * 56.85215 * 7 6 5 9 9 C 1.43018 * 113.73544 * 301.32743 * 8 7 6 10 10 C 1.47017 * 110.99842 * 164.07830 * 5 4 2 11 11 C 1.50701 * 109.47359 * 120.00431 * 2 1 3 12 12 O 1.21283 * 120.00316 * 119.99991 * 11 2 1 13 13 N 1.34781 * 119.99670 * 299.99856 * 11 2 1 14 14 C 1.47886 * 134.33867 * 179.97438 * 13 11 2 15 15 C 1.52379 * 85.58732 * 156.56108 * 14 13 11 16 16 C 1.47881 * 134.34218 * 0.06358 * 13 11 2 17 17 C 1.53651 * 116.39023 * 141.36079 * 15 14 13 18 18 C 1.54604 * 102.73215 * 95.48660 * 17 15 14 19 19 N 1.47129 * 107.36487 * 20.75057 * 18 17 15 20 20 C 1.36942 * 125.58816 * 180.66115 * 19 18 17 21 21 H 1.07994 * 120.00036 * 180.02562 * 20 19 18 22 22 C 1.38812 * 119.99821 * 0.03626 * 20 19 18 23 23 N 1.31625 * 119.99968 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00142 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47239 * 89.99343 * 24 22 20 26 26 H 1.48503 * 109.47032 * 209.99784 * 24 22 20 27 27 H 1.48501 * 109.46896 * 329.99354 * 24 22 20 28 28 C 1.47727 * 108.82832 * 0.93263 * 19 18 17 29 29 H 1.09000 * 109.47115 * 185.77381 * 1 2 3 30 30 H 1.08999 * 109.46786 * 305.77016 * 1 2 3 31 31 H 1.08994 * 109.47140 * 65.77307 * 1 2 3 32 32 H 1.08997 * 109.47008 * 294.55467 * 4 2 1 33 33 H 1.08997 * 109.46885 * 54.55906 * 4 2 1 34 34 H 1.08993 * 109.50993 * 297.54746 * 6 5 4 35 35 H 1.09003 * 109.51026 * 57.67814 * 6 5 4 36 36 H 1.09000 * 109.50779 * 296.92309 * 7 6 5 37 37 H 1.08998 * 109.54646 * 176.80298 * 7 6 5 38 38 H 1.08989 * 109.50880 * 298.73743 * 9 8 7 39 39 H 1.09003 * 109.53830 * 178.62147 * 9 8 7 40 40 H 1.08999 * 109.50654 * 302.32489 * 10 5 4 41 41 H 1.09001 * 109.50608 * 62.45761 * 10 5 4 42 42 H 1.08997 * 113.85519 * 42.39952 * 14 13 11 43 43 H 1.08996 * 113.85338 * 270.72592 * 14 13 11 44 44 H 1.09004 * 113.85607 * 89.27285 * 16 13 11 45 45 H 1.09004 * 113.85762 * 317.60555 * 16 13 11 46 46 H 1.08998 * 110.75958 * 337.17712 * 17 15 14 47 47 H 1.09001 * 110.91946 * 213.86780 * 17 15 14 48 48 H 1.09005 * 109.86304 * 261.30967 * 18 17 15 49 49 H 1.09001 * 109.97944 * 140.26507 * 18 17 15 50 50 H 0.97003 * 119.99479 * 179.97438 * 23 22 20 51 51 H 1.09000 * 110.40189 * 96.33152 * 28 19 18 52 52 H 1.08996 * 110.40009 * 218.74733 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5031 -0.6085 -1.3168 6 6 3.9103 0.7585 -1.6727 7 6 5.4388 0.8461 -1.6733 8 8 5.9667 -0.1287 -2.5770 9 6 5.5903 -1.4715 -2.2596 10 6 4.0634 -1.5825 -2.2649 11 6 2.0324 -0.7105 1.2304 12 8 2.7297 -1.6966 1.1191 13 7 1.7068 -0.2500 2.4546 14 6 2.0114 -0.6816 3.8359 15 6 1.7295 0.7646 4.2243 16 6 0.9016 0.8867 2.9508 17 6 0.9816 0.9827 5.5487 18 6 2.1310 1.2329 6.5519 19 7 3.3091 1.6489 5.7750 20 6 4.5395 1.9523 6.2941 21 1 5.3441 2.2493 5.6378 22 6 4.7525 1.8780 7.6638 23 7 3.7717 1.5164 8.4636 24 14 6.4310 2.2912 8.3718 25 1 6.4902 3.7401 8.6919 26 1 6.6543 1.5013 9.6093 27 1 7.4828 1.9607 7.3770 28 6 2.9456 1.6920 4.3438 29 1 -0.3633 -1.0224 0.1034 30 1 -0.3633 0.6007 0.8338 31 1 -0.3633 0.4217 -0.9371 32 1 1.7584 -1.7732 -1.2019 33 1 1.5992 -0.2668 -2.1366 34 1 3.5313 1.0046 -2.6645 35 1 3.5059 1.4604 -0.9433 36 1 5.8149 0.6524 -0.6687 37 1 5.7468 1.8420 -1.9917 38 1 5.9708 -1.7324 -1.2721 39 1 6.0073 -2.1521 -3.0019 40 1 3.7707 -2.5895 -1.9678 41 1 3.6868 -1.3738 -3.2662 42 1 3.0479 -0.9839 3.9848 43 1 1.2949 -1.3950 4.2429 44 1 -0.1543 0.6527 3.0873 45 1 1.0668 1.8156 2.4049 46 1 0.4156 0.0927 5.8238 47 1 0.3265 1.8517 5.4872 48 1 2.3523 0.3158 7.0979 49 1 1.8506 2.0212 7.2505 50 1 3.9207 1.4641 9.4207 51 1 2.6794 2.7073 4.0498 52 1 3.7676 1.3213 3.7317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073433840.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:13 Heat of formation + Delta-G solvation = -5.315061 kcal Electronic energy + Delta-G solvation = -30918.809755 eV Core-core repulsion = 26920.647158 eV Total energy + Delta-G solvation = -3998.162596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.60708 -39.72678 -38.34267 -36.12720 -35.48096 -33.49372 -32.12033 -31.33307 -29.62025 -28.48976 -27.97010 -26.19459 -25.84923 -24.90061 -24.19638 -23.72098 -22.07098 -20.59994 -20.27163 -18.79993 -18.24762 -17.07877 -16.86276 -16.73876 -16.23736 -15.81896 -15.24646 -15.20616 -15.08343 -14.79243 -14.70090 -14.38508 -14.34917 -13.70258 -13.53005 -13.26532 -13.02847 -12.73392 -12.55654 -12.48286 -12.17382 -11.96839 -11.90656 -11.83677 -11.69171 -11.65573 -11.49088 -11.04597 -10.96475 -10.90481 -10.73094 -10.66640 -10.37318 -10.12389 -10.06654 -9.83721 -9.81691 -9.65647 -9.25516 -8.58815 -8.46986 -8.37335 -6.82945 -5.70610 -3.03865 2.92466 3.03198 3.41397 3.46909 3.48624 3.53806 3.73288 4.39522 4.48560 4.51099 4.71834 4.73645 4.78081 4.91130 4.98127 4.99563 5.02837 5.10635 5.13353 5.25135 5.29832 5.37878 5.41977 5.47054 5.50085 5.50274 5.56330 5.60064 5.61597 5.66713 5.70949 5.73808 5.77083 5.82131 5.89744 6.02472 6.13750 6.19751 6.26051 6.48702 6.53654 6.68885 6.73665 6.80371 6.82939 6.98508 7.56453 7.61419 7.83233 7.99657 8.26141 8.48229 9.22975 9.82713 10.48031 11.41047 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012234 B = 0.003087 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.113768 B = 9068.455081 C =10699.843975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 H 0.093 0.907 4 C 0.078 3.922 5 N -0.523 5.523 6 C 0.016 3.984 7 C 0.063 3.937 8 O -0.388 6.388 9 C 0.063 3.937 10 C 0.026 3.974 11 C 0.543 3.457 12 O -0.526 6.526 13 N -0.643 5.643 14 C 0.131 3.869 15 C -0.104 4.104 16 C 0.114 3.886 17 C -0.132 4.132 18 C 0.179 3.821 19 N -0.604 5.604 20 C -0.227 4.227 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.922 5.922 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.163 3.837 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.037 0.963 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.046 0.954 49 H 0.044 0.956 50 H 0.252 0.748 51 H 0.022 0.978 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 -2.627 -20.697 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 H 0.111 0.889 4 C -0.050 4.050 5 N -0.248 5.248 6 C -0.113 4.113 7 C -0.014 4.014 8 O -0.307 6.307 9 C -0.014 4.014 10 C -0.103 4.103 11 C 0.331 3.669 12 O -0.401 6.401 13 N -0.379 5.379 14 C 0.009 3.991 15 C -0.105 4.105 16 C -0.009 4.009 17 C -0.171 4.171 18 C 0.054 3.946 19 N -0.331 5.331 20 C -0.355 4.355 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.570 5.570 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.037 3.963 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.040 0.960 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.496 -3.314 -20.447 22.028 hybrid contribution 0.194 0.424 -0.032 0.467 sum -7.302 -2.890 -20.479 21.933 Atomic orbital electron populations 1.21760 0.92884 1.02775 1.02747 1.21303 0.96822 1.00949 0.93456 0.88867 1.21916 0.86936 1.01326 0.94833 1.62052 1.09934 1.03696 1.49089 1.22848 0.97289 0.91352 0.99767 1.22654 0.91796 0.92480 0.94427 1.87953 1.73681 1.15940 1.53129 1.22659 0.93241 0.83808 1.01664 1.22706 0.96197 0.97451 0.93907 1.19950 0.80168 0.84092 0.82658 1.90688 1.37499 1.26298 1.85657 1.50218 1.51793 1.31072 1.04853 1.22880 1.02172 0.95991 0.78054 1.22476 0.97878 0.96043 0.94139 1.23040 0.95632 0.89469 0.92752 1.22666 0.98892 1.00601 0.94915 1.21200 0.83150 0.99567 0.90695 1.44550 1.08826 1.80060 0.99664 1.19045 0.86919 1.38792 0.90766 0.90520 1.24780 0.97838 1.01765 0.95979 1.69962 1.30289 1.53740 1.03002 0.86129 0.83394 0.77761 0.78562 1.21636 1.21677 1.20690 1.21018 0.92657 0.94539 0.88088 0.92147 0.91465 0.91721 0.89981 0.94193 0.94235 0.89741 0.91948 0.88530 0.91928 0.88656 0.89484 0.94489 0.89806 0.90284 0.89878 0.90337 0.91847 0.91818 0.93584 0.93810 0.93792 0.96013 0.94211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.00 37.16 0.33 -0.83 16 2 C -0.10 -1.10 2.58 -91.77 -0.24 -1.34 16 3 H 0.09 0.95 6.55 -51.93 -0.34 0.61 16 4 C 0.08 0.82 3.92 -3.82 -0.01 0.80 16 5 N -0.52 -6.21 3.86 -234.31 -0.90 -7.11 16 6 C 0.02 0.16 5.47 -3.71 -0.02 0.14 16 7 C 0.06 0.69 7.01 37.21 0.26 0.95 16 8 O -0.39 -4.74 10.83 -35.23 -0.38 -5.12 16 9 C 0.06 0.68 7.01 37.21 0.26 0.94 16 10 C 0.03 0.27 5.62 -3.71 -0.02 0.25 16 11 C 0.54 8.06 7.25 -10.98 -0.08 7.98 16 12 O -0.53 -9.79 16.09 5.56 0.09 -9.70 16 13 N -0.64 -9.28 3.58 -186.92 -0.67 -9.95 16 14 C 0.13 2.12 8.14 -3.60 -0.03 2.09 16 15 C -0.10 -1.66 0.99 -154.84 -0.15 -1.81 16 16 C 0.11 1.38 6.31 -3.60 -0.02 1.36 16 17 C -0.13 -2.21 6.36 -25.55 -0.16 -2.38 16 18 C 0.18 4.14 5.39 -2.86 -0.02 4.13 16 19 N -0.60 -15.06 3.41 -170.50 -0.58 -15.64 16 20 C -0.23 -6.29 10.28 -15.06 -0.15 -6.45 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 22 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 23 N -0.92 -26.79 10.30 55.49 0.57 -26.22 16 24 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.16 3.25 6.63 -3.16 -0.02 3.23 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.52 6.34 -51.93 -0.33 0.19 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.93 7.72 -51.93 -0.40 0.53 16 33 H 0.04 0.35 8.05 -51.93 -0.42 -0.07 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.84 6.55 -51.93 -0.34 0.50 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.75 8.14 -51.94 -0.42 0.32 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.91 8.04 -51.93 -0.42 0.49 16 41 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 1.59 8.12 -51.93 -0.42 1.17 16 43 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 44 H 0.08 0.82 8.01 -51.93 -0.42 0.41 16 45 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 46 H 0.06 0.95 7.99 -51.93 -0.41 0.54 16 47 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.05 1.19 7.40 -51.93 -0.38 0.81 16 49 H 0.04 1.13 7.47 -51.93 -0.39 0.74 16 50 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 51 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 52 H 0.04 0.83 8.07 -51.93 -0.42 0.42 16 LS Contribution 400.39 15.07 6.03 6.03 Total: -1.00 -33.15 400.39 -10.34 -43.49 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -9.30 Total: -1.67 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -0.17 Total: 8.77 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -1.58 Total: -58.92 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.29 Total: -14.83 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.15 -10.34 -43.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073433840.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.172 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds