Wall clock time and date at job start Tue Mar 31 2020 20:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46917 * 2 1 4 4 C 1.52999 * 109.47289 * 240.00568 * 2 1 3 5 5 N 1.46900 * 109.47160 * 62.60215 * 4 2 1 6 6 C 1.47013 * 111.00116 * 196.95679 * 5 4 2 7 7 C 1.53095 * 109.25956 * 177.61085 * 6 5 4 8 8 O 1.43006 * 109.26194 * 56.84731 * 7 6 5 9 9 C 1.43021 * 113.73921 * 301.33213 * 8 7 6 10 10 C 1.47012 * 110.99852 * 73.32220 * 5 4 2 11 11 C 1.50693 * 109.47174 * 120.00309 * 2 1 3 12 12 O 1.21276 * 120.00326 * 93.89648 * 11 2 1 13 13 N 1.34779 * 120.00168 * 273.89302 * 11 2 1 14 14 C 1.47367 * 125.52718 * 356.59743 * 13 11 2 15 15 C 1.54947 * 105.09546 * 156.54972 * 14 13 11 16 16 C 1.54803 * 101.50019 * 36.73694 * 15 14 13 17 17 H 1.09000 * 112.63558 * 85.33736 * 16 15 14 18 18 C 1.53260 * 109.74566 * 212.28988 * 16 15 14 19 19 N 1.46579 * 108.15980 * 95.76680 * 18 16 15 20 20 C 1.36938 * 125.30641 * 177.92276 * 19 18 16 21 21 H 1.07997 * 120.00252 * 347.74278 * 20 19 18 22 22 C 1.38812 * 119.99818 * 167.73937 * 20 19 18 23 23 N 1.31624 * 120.00190 * 0.75465 * 22 20 19 24 24 Si 1.86803 * 119.99963 * 180.75474 * 22 20 19 25 25 H 1.48506 * 109.47184 * 94.97760 * 24 22 20 26 26 H 1.48496 * 109.47225 * 214.98100 * 24 22 20 27 27 H 1.48497 * 109.47120 * 334.98087 * 24 22 20 28 28 C 1.46608 * 109.38995 * 357.88309 * 19 18 16 29 29 C 1.47210 * 125.53061 * 175.60115 * 13 11 2 30 30 H 1.08998 * 112.28955 * 56.21629 * 29 13 11 31 31 H 1.09000 * 109.47124 * 298.10434 * 1 2 3 32 32 H 1.08998 * 109.47589 * 58.10924 * 1 2 3 33 33 H 1.09005 * 109.46935 * 178.10803 * 1 2 3 34 34 H 1.08998 * 109.47534 * 182.60598 * 4 2 1 35 35 H 1.09001 * 109.46945 * 302.60489 * 4 2 1 36 36 H 1.09000 * 109.50761 * 297.54317 * 6 5 4 37 37 H 1.09006 * 109.50712 * 57.67014 * 6 5 4 38 38 H 1.08999 * 109.50677 * 296.91111 * 7 6 5 39 39 H 1.09001 * 109.50547 * 176.78544 * 7 6 5 40 40 H 1.08997 * 109.50158 * 298.73487 * 9 8 7 41 41 H 1.08997 * 109.51035 * 178.60242 * 9 8 7 42 42 H 1.08996 * 109.50826 * 302.32670 * 10 5 4 43 43 H 1.09003 * 109.50899 * 62.41200 * 10 5 4 44 44 H 1.08994 * 110.67469 * 37.41625 * 14 13 11 45 45 H 1.08994 * 109.92352 * 275.30023 * 14 13 11 46 46 H 1.08998 * 111.02084 * 278.68295 * 15 14 13 47 47 H 1.08995 * 111.04714 * 154.80927 * 15 14 13 48 48 H 1.09000 * 109.73494 * 215.44947 * 18 16 15 49 49 H 1.09001 * 109.73925 * 336.07958 * 18 16 15 50 50 H 0.97002 * 120.00024 * 179.97438 * 23 22 20 51 51 H 1.08996 * 109.91927 * 258.45955 * 28 19 18 52 52 H 1.08994 * 109.91828 * 137.16832 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 1.6024 0.0068 -2.4478 6 6 1.7128 -0.8371 -3.6465 7 6 1.1920 -0.0619 -4.8596 8 8 1.9239 1.1599 -4.9885 9 6 1.8378 2.0066 -3.8391 10 6 2.3652 1.2523 -2.6156 11 6 2.0323 -0.7104 1.2304 12 8 2.3017 -1.8919 1.1809 13 7 2.1822 -0.0329 2.3858 14 6 1.9605 1.4128 2.5657 15 6 1.6645 1.5908 4.0762 16 6 2.6179 0.5446 4.7029 17 1 3.6242 0.9337 4.8578 18 6 1.9916 -0.0277 5.9792 19 7 1.3109 -1.2788 5.6328 20 6 0.6673 -2.1011 6.5187 21 1 0.7982 -1.9584 7.5811 22 6 -0.1535 -3.1182 6.0510 23 7 -0.3014 -3.3016 4.7560 24 14 -1.0482 -4.2267 7.2594 25 1 -2.4201 -3.7056 7.4870 26 1 -1.1266 -5.6020 6.7050 27 1 -0.3091 -4.2535 8.5471 28 6 1.4258 -1.5120 4.1900 29 6 2.5740 -0.6205 3.6774 30 1 3.5207 -1.1573 3.6172 31 1 -0.3633 0.4841 0.9065 32 1 -0.3634 0.5429 -0.8725 33 1 -0.3633 -1.0272 -0.0339 34 1 3.1290 -0.7618 -1.2263 35 1 1.6390 -1.7344 -1.2730 36 1 2.7568 -1.1061 -3.8073 37 1 1.1200 -1.7418 -3.5106 38 1 0.1338 0.1605 -4.7226 39 1 1.3247 -0.6624 -5.7596 40 1 0.7983 2.2891 -3.6723 41 1 2.4376 2.9022 -4.0009 42 1 2.2486 1.8730 -1.7273 43 1 3.4197 1.0168 -2.7591 44 1 1.1113 1.7489 1.9708 45 1 2.8590 1.9638 2.2879 46 1 0.6242 1.3559 4.3010 47 1 1.9163 2.5979 4.4084 48 1 2.7710 -0.2244 6.7154 49 1 1.2719 0.6824 6.3865 50 1 -0.8747 -4.0126 4.4292 51 1 0.4942 -1.2390 3.6944 52 1 1.6568 -2.5602 4.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076576759.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:16 Heat of formation + Delta-G solvation = -63.540132 kcal Electronic energy + Delta-G solvation = -31084.021255 eV Core-core repulsion = 27083.333830 eV Total energy + Delta-G solvation = -4000.687425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.67358 -40.57202 -39.51896 -37.17572 -36.65242 -34.41316 -33.71883 -32.22343 -32.10318 -30.38946 -28.95334 -28.40130 -26.56973 -26.13594 -24.98823 -24.39745 -22.93575 -22.17546 -21.31653 -20.74890 -19.80052 -18.93851 -18.47496 -17.39809 -17.17769 -17.07302 -16.57422 -16.32572 -16.26510 -15.98346 -15.80857 -15.71203 -15.18069 -15.06184 -14.78461 -14.52657 -14.27258 -13.99810 -13.72525 -13.65994 -13.49351 -13.32066 -13.17483 -13.05099 -12.88867 -12.79720 -12.61163 -12.56363 -12.31343 -12.24016 -12.16419 -11.90427 -11.84875 -11.67510 -11.49577 -11.46606 -11.44545 -10.78254 -10.70688 -10.63195 -9.60891 -9.45226 -8.88491 -7.88870 -5.29435 1.40814 1.43658 1.53121 1.63288 1.94388 2.45818 2.72842 2.99499 3.28896 3.38545 3.59950 3.63307 3.74089 3.84540 3.93012 3.97062 4.01776 4.07674 4.21607 4.26785 4.27609 4.32837 4.36776 4.39048 4.49656 4.54297 4.61195 4.63068 4.68294 4.74184 4.76030 4.84348 4.84722 4.91570 4.93021 4.96542 5.01230 5.05432 5.11781 5.19132 5.26355 5.30033 5.42857 5.49673 5.55463 5.74394 5.83394 5.94213 6.17695 6.20915 6.62789 7.04170 7.21617 7.75113 8.37836 9.19956 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017836 B = 0.002780 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.454938 B =10068.454888 C =11097.725028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 H 0.121 0.879 4 C 0.083 3.917 5 N -0.532 5.532 6 C 0.016 3.984 7 C 0.068 3.932 8 O -0.406 6.406 9 C 0.064 3.936 10 C 0.012 3.988 11 C 0.519 3.481 12 O -0.592 6.592 13 N -0.608 5.608 14 C 0.097 3.903 15 C -0.115 4.115 16 C -0.092 4.092 17 H 0.130 0.870 18 C 0.137 3.863 19 N -0.624 5.624 20 C -0.246 4.246 21 H 0.086 0.914 22 C -0.068 4.068 23 N -0.948 5.948 24 Si 0.981 3.019 25 H -0.283 1.283 26 H -0.299 1.299 27 H -0.262 1.262 28 C 0.202 3.798 29 C 0.115 3.885 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.030 0.970 34 H 0.031 0.969 35 H 0.062 0.938 36 H 0.035 0.965 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.035 0.965 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.051 0.949 47 H 0.127 0.873 48 H 0.031 0.969 49 H 0.036 0.964 50 H 0.243 0.757 51 H -0.007 1.007 52 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 17.825 -15.908 24.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.102 4.102 3 H 0.139 0.861 4 C -0.045 4.045 5 N -0.257 5.257 6 C -0.113 4.113 7 C -0.009 4.009 8 O -0.325 6.325 9 C -0.013 4.013 10 C -0.116 4.116 11 C 0.309 3.691 12 O -0.472 6.472 13 N -0.341 5.341 14 C -0.024 4.024 15 C -0.152 4.152 16 C -0.111 4.111 17 H 0.148 0.852 18 C 0.012 3.988 19 N -0.351 5.351 20 C -0.375 4.375 21 H 0.104 0.896 22 C -0.261 4.261 23 N -0.596 5.596 24 Si 0.808 3.192 25 H -0.210 1.210 26 H -0.226 1.226 27 H -0.187 1.187 28 C 0.075 3.925 29 C 0.010 3.990 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.085 0.915 41 H 0.134 0.866 42 H 0.122 0.878 43 H 0.053 0.947 44 H 0.112 0.888 45 H 0.123 0.877 46 H 0.070 0.930 47 H 0.145 0.855 48 H 0.049 0.951 49 H 0.054 0.946 50 H 0.053 0.947 51 H 0.011 0.989 52 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 5.075 17.202 -16.114 24.110 hybrid contribution 0.035 -2.089 0.941 2.291 sum 5.110 15.113 -15.173 22.017 Atomic orbital electron populations 1.21527 0.91518 1.01614 1.03164 1.21118 0.98556 1.00911 0.89635 0.86092 1.21705 0.97226 0.96945 0.88654 1.62142 1.55599 1.05937 1.02031 1.22846 1.00378 0.97280 0.90751 1.22728 0.95726 0.85063 0.97386 1.87955 1.73175 1.31576 1.39818 1.22813 1.02089 0.92924 0.83460 1.22976 0.95540 0.92131 1.00949 1.21092 0.76650 0.86558 0.84824 1.90695 1.52599 1.18291 1.85595 1.48669 1.67134 1.10768 1.07513 1.22696 1.03207 0.78988 0.97491 1.22815 0.98490 1.00269 0.93660 1.22902 1.01354 0.94221 0.92615 0.85234 1.21262 0.94666 0.87187 0.95710 1.44443 1.63834 1.22754 1.04031 1.19457 1.19779 1.09007 0.89267 0.89582 1.25851 1.00651 1.01879 0.97749 1.70276 1.42114 1.34133 1.13120 0.85030 0.78639 0.77247 0.78241 1.20952 1.22551 1.18682 1.20826 0.92697 0.95191 0.83758 1.22591 0.96766 0.96129 0.83531 0.91601 0.92846 0.88127 0.95081 0.95050 0.91892 0.94681 0.89384 0.91675 0.86988 0.91517 0.86589 0.87780 0.94652 0.88810 0.87717 0.93042 0.85512 0.95140 0.94559 0.94746 0.98880 0.97881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 8.96 71.98 0.65 -2.40 16 2 C -0.08 -2.02 2.04 -11.54 -0.02 -2.05 16 3 H 0.12 2.14 5.80 -2.39 -0.01 2.13 16 4 C 0.08 2.09 3.89 86.30 0.34 2.43 16 5 N -0.53 -10.28 4.06 -895.21 -3.63 -13.91 16 6 C 0.02 0.28 5.61 86.31 0.48 0.77 16 7 C 0.07 1.03 7.01 72.01 0.50 1.54 16 8 O -0.41 -7.31 10.83 -148.98 -1.61 -8.92 16 9 C 0.06 0.85 7.01 72.02 0.50 1.35 16 10 C 0.01 0.18 5.47 86.32 0.47 0.65 16 11 C 0.52 18.88 6.75 87.65 0.59 19.48 16 12 O -0.59 -28.28 16.38 -3.02 -0.05 -28.33 16 13 N -0.61 -20.33 2.88 -783.77 -2.26 -22.59 16 14 C 0.10 2.06 6.30 86.88 0.55 2.61 16 15 C -0.11 -2.69 6.24 31.88 0.20 -2.49 16 16 C -0.09 -2.77 3.91 -9.31 -0.04 -2.81 16 17 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 18 C 0.14 5.39 6.65 86.45 0.58 5.96 16 19 N -0.62 -33.32 3.37 -698.80 -2.36 -35.68 16 20 C -0.25 -14.31 10.22 84.03 0.86 -13.45 16 21 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 22 C -0.07 -4.08 5.48 84.86 0.46 -3.62 16 23 N -0.95 -61.59 10.42 21.65 0.23 -61.36 16 24 Si 0.98 47.76 29.55 68.60 2.03 49.79 16 25 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 26 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 27 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 28 C 0.20 10.91 4.66 86.75 0.40 11.32 16 29 C 0.11 4.61 3.83 46.02 0.18 4.79 16 30 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.05 1.37 7.46 -2.39 -0.02 1.35 16 32 H 0.10 2.01 7.74 -2.39 -0.02 1.99 16 33 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.03 0.83 8.03 -2.39 -0.02 0.81 16 35 H 0.06 1.91 7.72 -2.39 -0.02 1.89 16 36 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 1.59 8.03 -2.38 -0.02 1.57 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.10 1.21 6.64 -2.39 -0.02 1.19 16 43 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.09 1.65 6.78 -2.39 -0.02 1.63 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.05 1.56 7.88 -2.39 -0.02 1.55 16 47 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.04 1.38 7.74 -2.39 -0.02 1.36 16 50 H 0.24 15.51 8.31 -92.71 -0.77 14.73 16 51 H -0.01 -0.41 7.66 -2.39 -0.02 -0.43 16 52 H 0.00 0.18 7.06 -2.39 -0.02 0.16 16 Total: -1.00 -83.87 395.25 -0.07 -83.94 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.88 Total: 13.00 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: 6.71 Total: 24.07 kcal Atomic # 7 Polarization: -125.52 SS G_CDS: -8.03 Total: -133.55 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -1.66 Total: -37.25 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -83.87 -0.07 -83.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076576759.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.403 kcal (2) G-P(sol) polarization free energy of solvation -83.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds