Wall clock time and date at job start Tue Mar 31 2020 20:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47805 * 2 1 4 4 C 1.53002 * 109.47005 * 239.99438 * 2 1 3 5 5 C 1.50696 * 109.47303 * 175.00382 * 4 2 1 6 6 O 1.21284 * 120.00109 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00137 * 180.02562 * 5 4 2 8 8 C 1.46506 * 119.99873 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47035 * 179.97438 * 8 7 5 10 10 C 1.53784 * 113.61168 * 274.13488 * 9 8 7 11 11 C 1.53951 * 87.01629 * 220.04779 * 10 9 8 12 12 N 1.46504 * 113.74205 * 139.94735 * 11 10 9 13 13 C 1.36932 * 120.00275 * 107.39800 * 12 11 10 14 14 H 1.08002 * 119.99861 * 0.02562 * 13 12 11 15 15 C 1.38809 * 120.00338 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00525 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99715 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47053 * 89.99537 * 17 15 13 19 19 H 1.48505 * 109.46955 * 209.99564 * 17 15 13 20 20 H 1.48499 * 109.47014 * 329.99528 * 17 15 13 21 21 C 1.53772 * 87.11347 * 25.36206 * 11 10 9 22 22 N 1.46503 * 109.46969 * 119.99938 * 2 1 3 23 23 C 1.45748 * 117.94590 * 239.99528 * 22 2 1 24 24 C 1.52921 * 110.48719 * 160.92688 * 23 22 2 25 25 C 1.53341 * 108.67653 * 50.75216 * 24 23 22 26 26 C 1.53071 * 108.42561 * 292.46790 * 25 24 23 27 27 C 1.33356 * 117.94795 * 59.73608 * 22 2 1 28 28 O 1.21288 * 118.24256 * 2.22209 * 27 22 2 29 29 H 1.09008 * 109.46877 * 60.00035 * 1 2 3 30 30 H 1.08997 * 109.47805 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47027 * 300.00527 * 1 2 3 32 32 H 1.09000 * 109.46986 * 55.00531 * 4 2 1 33 33 H 1.08996 * 109.47407 * 295.00759 * 4 2 1 34 34 H 0.96999 * 120.00047 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.47073 * 299.99562 * 8 7 5 36 36 H 1.09000 * 109.47212 * 59.99645 * 8 7 5 37 37 H 1.08999 * 112.84703 * 45.32647 * 9 8 7 38 38 H 1.08998 * 113.61528 * 334.56969 * 10 9 8 39 39 H 1.09002 * 113.61529 * 105.47075 * 10 9 8 40 40 H 1.09001 * 113.53832 * 270.80886 * 11 10 9 41 41 H 0.96995 * 119.99648 * 287.39808 * 12 11 10 42 42 H 0.97003 * 120.00165 * 180.02562 * 16 15 13 43 43 H 1.09001 * 113.61872 * 220.08438 * 21 11 10 44 44 H 1.09004 * 113.61309 * 89.18616 * 21 11 10 45 45 H 1.08995 * 109.30419 * 281.23672 * 23 22 2 46 46 H 1.08999 * 109.30325 * 40.61846 * 23 22 2 47 47 H 1.09001 * 109.60683 * 170.51253 * 24 23 22 48 48 H 1.09003 * 109.60123 * 290.99255 * 24 23 22 49 49 H 1.09001 * 109.67325 * 52.20156 * 25 24 23 50 50 H 1.09005 * 109.67622 * 172.73749 * 25 24 23 51 51 H 1.09000 * 109.39774 * 169.02193 * 26 25 24 52 52 H 1.08991 * 109.40489 * 288.86023 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5418 -0.6152 -1.3127 6 8 4.1451 -0.0214 -0.4441 7 7 4.2148 -1.1800 -2.3348 8 6 5.6749 -1.0772 -2.3961 9 6 6.1849 -1.7985 -3.6454 10 6 6.4096 -3.3056 -3.4379 11 6 7.6834 -3.1510 -4.2886 12 7 8.8222 -3.9276 -3.7920 13 6 9.2337 -5.0466 -4.4655 14 1 8.7190 -5.3565 -5.3630 15 6 10.3129 -5.7820 -3.9953 16 7 10.7088 -6.8573 -4.6429 17 14 11.2036 -5.2455 -2.4434 18 1 10.5707 -5.8865 -1.2628 19 1 12.6289 -5.6547 -2.5241 20 1 11.1193 -3.7690 -2.3096 21 6 7.7042 -1.6775 -3.8495 22 7 2.0183 -0.6906 1.1962 23 6 2.8530 0.0603 2.1255 24 6 2.8768 -0.6213 3.4943 25 6 3.2230 -2.1023 3.2993 26 6 2.0606 -2.7788 2.5684 27 6 1.6668 -1.9654 1.3692 28 8 0.9972 -2.4978 0.5094 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6054 -0.2619 -2.1369 33 1 1.7515 -1.7716 -1.2055 34 1 3.7324 -1.6552 -3.0293 35 1 5.9637 -0.0270 -2.4392 36 1 6.1092 -1.5374 -1.5086 37 1 5.6042 -1.5623 -4.5371 38 1 6.6072 -3.5790 -2.4014 39 1 5.6459 -3.9291 -3.9029 40 1 7.5126 -3.2861 -5.3566 41 1 9.2846 -3.6490 -2.9862 42 1 11.4628 -7.3714 -4.3141 43 1 7.9842 -0.9883 -4.6463 44 1 8.2565 -1.5049 -2.9258 45 1 3.8684 0.1164 1.7333 46 1 2.4552 1.0694 2.2325 47 1 3.6305 -0.1494 4.1247 48 1 1.8969 -0.5334 3.9636 49 1 4.1321 -2.1915 2.7046 50 1 3.3711 -2.5755 4.2701 51 1 2.3648 -3.7755 2.2489 52 1 1.2071 -2.8589 3.2415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100329918.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:20 Heat of formation + Delta-G solvation = -47.060259 kcal Electronic energy + Delta-G solvation = -30023.568260 eV Core-core repulsion = 26023.595456 eV Total energy + Delta-G solvation = -3999.972804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16585 -39.63203 -38.53077 -36.65818 -35.61279 -34.66545 -33.33066 -31.67617 -30.76352 -29.79507 -28.90219 -26.83174 -25.21312 -24.74569 -23.80377 -23.40003 -21.55842 -20.96245 -20.55496 -19.32229 -18.55652 -17.44966 -17.27064 -17.13718 -16.36637 -16.01868 -15.77360 -15.37775 -14.91805 -14.69249 -14.59588 -14.48815 -14.18719 -14.13066 -13.73357 -13.53636 -13.32476 -13.17885 -12.69951 -12.49471 -12.35221 -12.22144 -12.09996 -11.99392 -11.92998 -11.67934 -11.60094 -11.47880 -11.29587 -11.23798 -11.09085 -10.91387 -10.49547 -10.34456 -10.15603 -9.87826 -9.74406 -9.57715 -9.53910 -9.05002 -8.90207 -8.84605 -7.28293 -5.79535 -3.15093 2.45372 2.61362 2.79104 3.15379 3.36161 3.39251 3.44035 4.26012 4.42931 4.44994 4.48974 4.56081 4.56947 4.66541 4.86908 4.87467 4.94460 5.02883 5.09131 5.10680 5.19963 5.23130 5.28125 5.38150 5.39579 5.41080 5.45941 5.52035 5.53998 5.60841 5.64878 5.67934 5.72181 5.74931 5.78842 5.85458 5.91899 5.98874 6.16321 6.19270 6.22581 6.36059 6.42307 6.50269 6.68027 6.96749 7.33363 7.46211 7.96859 8.00006 8.19426 8.40281 9.18024 9.90781 10.10631 11.38701 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.002406 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.224625 B =11633.303654 C =12533.716227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.161 3.839 3 H 0.091 0.909 4 C -0.167 4.167 5 C 0.513 3.487 6 O -0.546 6.546 7 N -0.727 5.727 8 C 0.134 3.866 9 C -0.127 4.127 10 C -0.161 4.161 11 C 0.172 3.828 12 N -0.737 5.737 13 C -0.248 4.248 14 H 0.091 0.909 15 C 0.005 3.995 16 N -0.933 5.933 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.277 1.277 21 C -0.145 4.145 22 N -0.584 5.584 23 C 0.113 3.887 24 C -0.136 4.136 25 C -0.125 4.125 26 C -0.135 4.135 27 C 0.516 3.484 28 O -0.557 6.557 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.400 0.600 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.084 0.916 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.068 0.932 49 H 0.072 0.928 50 H 0.075 0.925 51 H 0.099 0.901 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.843 17.597 13.976 31.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.109 0.891 4 C -0.207 4.207 5 C 0.300 3.700 6 O -0.424 6.424 7 N -0.378 5.378 8 C 0.011 3.989 9 C -0.146 4.146 10 C -0.202 4.202 11 C 0.061 3.939 12 N -0.377 5.377 13 C -0.378 4.378 14 H 0.109 0.891 15 C -0.191 4.191 16 N -0.580 5.580 17 Si 0.714 3.286 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.185 4.185 22 N -0.316 5.316 23 C -0.010 4.010 24 C -0.174 4.174 25 C -0.162 4.162 26 C -0.175 4.175 27 C 0.305 3.695 28 O -0.437 6.437 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.140 0.860 34 H 0.234 0.766 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.093 0.907 51 H 0.117 0.883 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.639 17.532 14.004 31.172 hybrid contribution 0.573 0.082 0.801 0.988 sum -21.066 17.614 14.804 31.196 Atomic orbital electron populations 1.22222 0.94350 1.04462 1.01792 1.20762 0.94045 0.96051 0.83424 0.89093 1.22257 0.92297 1.06473 0.99708 1.20661 0.90005 0.78153 0.81176 1.90603 1.70605 1.42884 1.38312 1.46074 1.08250 1.56709 1.26752 1.21369 0.78984 1.00267 0.98307 1.22636 0.97389 0.97714 0.96876 1.23928 1.01057 0.93151 1.02013 1.21534 0.86976 0.88698 0.96726 1.42759 1.34817 1.29921 1.30160 1.19139 1.11301 0.99930 1.07419 0.89135 1.24696 0.98528 0.97281 0.98623 1.69703 1.29312 1.18263 1.40766 0.86555 0.79565 0.78103 0.84355 1.21054 1.21676 1.20282 1.23454 0.93648 0.99800 1.01558 1.47223 1.50071 1.11247 1.23036 1.21519 0.96677 0.94465 0.88337 1.21898 1.02647 0.96119 0.96688 1.21651 0.98245 0.95219 1.01131 1.21657 1.00133 0.99972 0.95710 1.20111 0.79502 0.81610 0.88268 1.90599 1.40213 1.69614 1.43287 0.91718 0.89828 0.92625 0.88418 0.86024 0.76573 0.91910 0.91647 0.89138 0.90563 0.92276 0.89844 0.80475 0.93020 0.91655 0.90413 0.89537 0.91264 0.89879 0.91354 0.90885 0.90667 0.88277 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 9.08 37.16 0.34 -1.02 16 2 C 0.16 1.46 2.20 -67.93 -0.15 1.31 16 3 H 0.09 0.79 7.60 -51.93 -0.39 0.40 16 4 C -0.17 -1.59 5.01 -27.88 -0.14 -1.73 16 5 C 0.51 6.03 7.69 -10.99 -0.08 5.95 16 6 O -0.55 -7.69 13.21 5.55 0.07 -7.62 16 7 N -0.73 -7.97 5.56 -60.29 -0.33 -8.31 16 8 C 0.13 1.66 5.50 -4.04 -0.02 1.64 16 9 C -0.13 -1.60 3.75 -89.81 -0.34 -1.94 16 10 C -0.16 -2.55 7.45 -25.83 -0.19 -2.74 16 11 C 0.17 3.19 4.48 -67.03 -0.30 2.89 16 12 N -0.74 -17.33 5.21 -52.55 -0.27 -17.60 16 13 C -0.25 -6.98 10.45 -15.06 -0.16 -7.13 16 14 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 15 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 16 N -0.93 -29.33 13.97 55.49 0.78 -28.56 16 17 Si 0.88 22.16 27.74 -169.99 -4.71 17.45 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 20 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 21 C -0.14 -2.15 7.39 -25.93 -0.19 -2.34 16 22 N -0.58 -5.63 2.24 -167.38 -0.37 -6.00 16 23 C 0.11 0.92 5.76 -4.49 -0.03 0.90 16 24 C -0.14 -0.85 6.02 -26.60 -0.16 -1.01 16 25 C -0.12 -0.89 6.03 -26.52 -0.16 -1.05 16 26 C -0.14 -1.13 6.03 -28.11 -0.17 -1.30 16 27 C 0.52 5.63 6.88 -11.88 -0.08 5.55 16 28 O -0.56 -7.48 12.45 5.55 0.07 -7.41 16 29 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.08 0.85 5.99 -51.93 -0.31 0.54 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.12 1.37 5.75 -51.93 -0.30 1.07 16 34 H 0.40 3.62 8.47 -40.82 -0.35 3.28 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.31 7.92 -51.93 -0.41 0.90 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 41 H 0.36 8.41 5.79 -40.82 -0.24 8.17 16 42 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 45 H 0.09 0.90 6.32 -51.93 -0.33 0.57 16 46 H 0.07 0.47 8.03 -51.93 -0.42 0.06 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 49 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 50 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 52 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 402.40 15.07 6.06 6.06 Total: -1.00 -33.93 402.40 -9.72 -43.65 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -9.08 Total: 10.33 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.93 Total: -2.00 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.21 Total: -60.48 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.14 Total: -15.02 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.93 -9.72 -43.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100329918.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.410 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds