Wall clock time and date at job start Tue Mar 31 2020 20:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47805 * 2 1 4 4 C 1.53002 * 109.47005 * 239.99438 * 2 1 3 5 5 C 1.50696 * 109.47303 * 175.00382 * 4 2 1 6 6 O 1.21284 * 120.00109 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00137 * 180.02562 * 5 4 2 8 8 C 1.46506 * 119.99873 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47035 * 179.97438 * 8 7 5 10 10 C 1.53784 * 113.61168 * 274.13488 * 9 8 7 11 11 C 1.53951 * 87.01629 * 220.04779 * 10 9 8 12 12 N 1.46504 * 113.74205 * 139.94735 * 11 10 9 13 13 C 1.36932 * 120.00275 * 107.39800 * 12 11 10 14 14 H 1.08002 * 119.99861 * 0.02562 * 13 12 11 15 15 C 1.38809 * 120.00338 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00525 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99715 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47053 * 89.99537 * 17 15 13 19 19 H 1.48505 * 109.46955 * 209.99564 * 17 15 13 20 20 H 1.48499 * 109.47014 * 329.99528 * 17 15 13 21 21 C 1.53772 * 87.11347 * 25.36206 * 11 10 9 22 22 N 1.46503 * 109.46969 * 119.99938 * 2 1 3 23 23 C 1.45748 * 117.94590 * 239.99528 * 22 2 1 24 24 C 1.52921 * 110.48719 * 160.92688 * 23 22 2 25 25 C 1.53341 * 108.67653 * 50.75216 * 24 23 22 26 26 C 1.53071 * 108.42561 * 292.46790 * 25 24 23 27 27 C 1.33356 * 117.94795 * 59.73608 * 22 2 1 28 28 O 1.21288 * 118.24256 * 2.22209 * 27 22 2 29 29 H 1.09008 * 109.46877 * 60.00035 * 1 2 3 30 30 H 1.08997 * 109.47805 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47027 * 300.00527 * 1 2 3 32 32 H 1.09000 * 109.46986 * 55.00531 * 4 2 1 33 33 H 1.08996 * 109.47407 * 295.00759 * 4 2 1 34 34 H 0.96999 * 120.00047 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.47073 * 299.99562 * 8 7 5 36 36 H 1.09000 * 109.47212 * 59.99645 * 8 7 5 37 37 H 1.08999 * 112.84703 * 45.32647 * 9 8 7 38 38 H 1.08998 * 113.61528 * 334.56969 * 10 9 8 39 39 H 1.09002 * 113.61529 * 105.47075 * 10 9 8 40 40 H 1.09001 * 113.53832 * 270.80886 * 11 10 9 41 41 H 0.96995 * 119.99648 * 287.39808 * 12 11 10 42 42 H 0.97003 * 120.00165 * 180.02562 * 16 15 13 43 43 H 1.09001 * 113.61872 * 220.08438 * 21 11 10 44 44 H 1.09004 * 113.61309 * 89.18616 * 21 11 10 45 45 H 1.08995 * 109.30419 * 281.23672 * 23 22 2 46 46 H 1.08999 * 109.30325 * 40.61846 * 23 22 2 47 47 H 1.09001 * 109.60683 * 170.51253 * 24 23 22 48 48 H 1.09003 * 109.60123 * 290.99255 * 24 23 22 49 49 H 1.09001 * 109.67325 * 52.20156 * 25 24 23 50 50 H 1.09005 * 109.67622 * 172.73749 * 25 24 23 51 51 H 1.09000 * 109.39774 * 169.02193 * 26 25 24 52 52 H 1.08991 * 109.40489 * 288.86023 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5418 -0.6152 -1.3127 6 8 4.1451 -0.0214 -0.4441 7 7 4.2148 -1.1800 -2.3348 8 6 5.6749 -1.0772 -2.3961 9 6 6.1849 -1.7985 -3.6454 10 6 6.4096 -3.3056 -3.4379 11 6 7.6834 -3.1510 -4.2886 12 7 8.8222 -3.9276 -3.7920 13 6 9.2337 -5.0466 -4.4655 14 1 8.7190 -5.3565 -5.3630 15 6 10.3129 -5.7820 -3.9953 16 7 10.7088 -6.8573 -4.6429 17 14 11.2036 -5.2455 -2.4434 18 1 10.5707 -5.8865 -1.2628 19 1 12.6289 -5.6547 -2.5241 20 1 11.1193 -3.7690 -2.3096 21 6 7.7042 -1.6775 -3.8495 22 7 2.0183 -0.6906 1.1962 23 6 2.8530 0.0603 2.1255 24 6 2.8768 -0.6213 3.4943 25 6 3.2230 -2.1023 3.2993 26 6 2.0606 -2.7788 2.5684 27 6 1.6668 -1.9654 1.3692 28 8 0.9972 -2.4978 0.5094 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6054 -0.2619 -2.1369 33 1 1.7515 -1.7716 -1.2055 34 1 3.7324 -1.6552 -3.0293 35 1 5.9637 -0.0270 -2.4392 36 1 6.1092 -1.5374 -1.5086 37 1 5.6042 -1.5623 -4.5371 38 1 6.6072 -3.5790 -2.4014 39 1 5.6459 -3.9291 -3.9029 40 1 7.5126 -3.2861 -5.3566 41 1 9.2846 -3.6490 -2.9862 42 1 11.4628 -7.3714 -4.3141 43 1 7.9842 -0.9883 -4.6463 44 1 8.2565 -1.5049 -2.9258 45 1 3.8684 0.1164 1.7333 46 1 2.4552 1.0694 2.2325 47 1 3.6305 -0.1494 4.1247 48 1 1.8969 -0.5334 3.9636 49 1 4.1321 -2.1915 2.7046 50 1 3.3711 -2.5755 4.2701 51 1 2.3648 -3.7755 2.2489 52 1 1.2071 -2.8589 3.2415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100329918.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:19 Heat of formation + Delta-G solvation = -69.509998 kcal Electronic energy + Delta-G solvation = -30024.541754 eV Core-core repulsion = 26023.595456 eV Total energy + Delta-G solvation = -4000.946298 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.93773 -40.65844 -39.74463 -37.40632 -36.39067 -35.94900 -34.97433 -32.83371 -32.29707 -30.46530 -29.84043 -27.91299 -26.50420 -25.54988 -25.34435 -24.24104 -22.56381 -22.10122 -21.50651 -20.72817 -19.38724 -19.26451 -18.13590 -17.93480 -17.30220 -16.89400 -16.77714 -16.40030 -16.31177 -16.00881 -15.69943 -15.29688 -15.19890 -14.92948 -14.81811 -14.61446 -14.36611 -14.10565 -14.07724 -13.91777 -13.29233 -13.28120 -13.11702 -13.05556 -12.96879 -12.80099 -12.70088 -12.62598 -12.27667 -12.17143 -11.93198 -11.86366 -11.82653 -11.74035 -11.70831 -11.58902 -11.14961 -10.90353 -10.70115 -10.36770 -10.01225 -9.60268 -9.28851 -8.04373 -5.37035 1.35652 1.38687 1.45968 1.64918 1.70817 2.09757 2.26036 2.46345 3.25886 3.57005 3.58113 3.67646 3.74158 3.83799 3.85974 3.89818 3.91989 4.01356 4.06688 4.25569 4.25993 4.35144 4.38527 4.49711 4.53292 4.53825 4.61970 4.69251 4.75759 4.80064 4.82940 4.89836 4.91836 4.94058 4.95592 5.00249 5.03411 5.09268 5.09840 5.19037 5.31131 5.32604 5.36020 5.49910 5.64462 5.66711 5.76297 6.21491 6.58435 6.60450 7.06213 7.21559 7.30161 7.84224 8.02200 9.17223 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.002406 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.224625 B =11633.303654 C =12533.716227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.154 3.846 3 H 0.097 0.903 4 C -0.159 4.159 5 C 0.509 3.491 6 O -0.570 6.570 7 N -0.722 5.722 8 C 0.142 3.858 9 C -0.098 4.098 10 C -0.156 4.156 11 C 0.146 3.854 12 N -0.744 5.744 13 C -0.232 4.232 14 H 0.058 0.942 15 C -0.066 4.066 16 N -0.984 5.984 17 Si 0.954 3.046 18 H -0.281 1.281 19 H -0.295 1.295 20 H -0.251 1.251 21 C -0.134 4.134 22 N -0.583 5.583 23 C 0.111 3.889 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.135 4.135 27 C 0.505 3.495 28 O -0.589 6.589 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.411 0.589 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.118 0.882 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.365 0.635 42 H 0.258 0.742 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.081 0.919 49 H 0.051 0.949 50 H 0.094 0.906 51 H 0.091 0.909 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.113 20.299 15.490 34.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 H 0.115 0.885 4 C -0.200 4.200 5 C 0.297 3.703 6 O -0.450 6.450 7 N -0.373 5.373 8 C 0.018 3.982 9 C -0.117 4.117 10 C -0.197 4.197 11 C 0.037 3.963 12 N -0.385 5.385 13 C -0.364 4.364 14 H 0.076 0.924 15 C -0.258 4.258 16 N -0.635 5.635 17 Si 0.781 3.219 18 H -0.207 1.207 19 H -0.222 1.222 20 H -0.176 1.176 21 C -0.173 4.173 22 N -0.314 5.314 23 C -0.011 4.011 24 C -0.167 4.167 25 C -0.159 4.159 26 C -0.174 4.174 27 C 0.295 3.705 28 O -0.472 6.472 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.124 0.876 34 H 0.247 0.753 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.136 0.864 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.198 0.802 42 H 0.066 0.934 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.103 0.897 47 H 0.116 0.884 48 H 0.100 0.900 49 H 0.070 0.930 50 H 0.113 0.887 51 H 0.109 0.891 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.958 20.300 15.516 34.350 hybrid contribution 0.884 -0.744 0.238 1.180 sum -22.074 19.556 15.754 33.435 Atomic orbital electron populations 1.22125 0.93388 1.03291 1.03048 1.20919 0.94778 0.96157 0.83125 0.88462 1.22227 0.90665 1.05800 1.01276 1.21069 0.90883 0.77614 0.80749 1.90603 1.71246 1.44028 1.39144 1.46011 1.07710 1.56596 1.27030 1.21168 0.79743 1.00181 0.97082 1.22470 0.96398 0.94741 0.98066 1.23764 0.99495 0.95946 1.00466 1.21955 0.86537 0.90903 0.96873 1.42785 1.36327 1.29262 1.30113 1.19127 1.10240 1.00855 1.06138 0.92353 1.25519 1.00046 0.97681 1.02512 1.69883 1.30362 1.20116 1.43126 0.85425 0.77558 0.79067 0.79837 1.20741 1.22164 1.17590 1.23331 0.95195 0.96856 1.01905 1.47337 1.49589 1.11072 1.23374 1.21584 0.95205 0.95427 0.88924 1.21894 1.03874 0.95182 0.95756 1.21628 0.96674 0.96089 1.01463 1.21689 1.01283 0.99222 0.95235 1.20585 0.79192 0.82061 0.88669 1.90583 1.41741 1.70324 1.44507 0.89866 0.92069 0.91987 0.85687 0.87625 0.75299 0.91350 0.93651 0.86443 0.91964 0.91967 0.90471 0.80182 0.93366 0.89864 0.90524 0.91916 0.89691 0.88354 0.90039 0.92994 0.88724 0.89100 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.08 71.98 0.65 -1.66 16 2 C 0.15 2.58 2.20 44.99 0.10 2.68 16 3 H 0.10 1.51 7.60 -2.39 -0.02 1.49 16 4 C -0.16 -2.80 5.01 29.85 0.15 -2.65 16 5 C 0.51 11.26 7.69 87.66 0.67 11.93 16 6 O -0.57 -15.51 13.21 -3.04 -0.04 -15.55 16 7 N -0.72 -14.40 5.56 -463.04 -2.57 -16.98 16 8 C 0.14 3.21 5.50 86.38 0.48 3.69 16 9 C -0.10 -2.21 3.75 -10.27 -0.04 -2.25 16 10 C -0.16 -4.76 7.45 31.18 0.23 -4.53 16 11 C 0.15 5.27 4.48 45.57 0.20 5.48 16 12 N -0.74 -34.66 5.21 -320.18 -1.67 -36.33 16 13 C -0.23 -13.33 10.45 84.03 0.88 -12.45 16 14 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 15 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 16 N -0.98 -63.75 13.97 21.65 0.30 -63.44 16 17 Si 0.95 46.09 27.74 68.60 1.90 47.99 16 18 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 19 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 20 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 21 C -0.13 -3.63 7.39 31.12 0.23 -3.40 16 22 N -0.58 -10.71 2.24 -802.65 -1.79 -12.50 16 23 C 0.11 1.67 5.76 86.49 0.50 2.17 16 24 C -0.13 -1.36 6.02 30.68 0.18 -1.18 16 25 C -0.12 -1.57 6.03 30.73 0.19 -1.38 16 26 C -0.13 -2.15 6.03 29.70 0.18 -1.97 16 27 C 0.51 10.82 6.88 87.71 0.60 11.42 16 28 O -0.59 -15.90 12.45 -3.05 -0.04 -15.94 16 29 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.06 1.20 5.99 -2.39 -0.01 1.19 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.11 2.32 5.75 -2.39 -0.01 2.30 16 34 H 0.41 6.44 8.47 -92.71 -0.79 5.66 16 35 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.05 1.23 7.87 -2.39 -0.02 1.21 16 37 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 2.10 7.92 -2.39 -0.02 2.08 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.08 2.87 8.10 -2.39 -0.02 2.85 16 41 H 0.36 16.44 5.79 -92.71 -0.54 15.90 16 42 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 43 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 44 H 0.08 2.15 8.08 -2.38 -0.02 2.13 16 45 H 0.06 1.28 6.32 -2.39 -0.02 1.26 16 46 H 0.08 1.00 8.03 -2.39 -0.02 0.98 16 47 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.08 0.68 8.12 -2.39 -0.02 0.66 16 49 H 0.05 0.89 8.13 -2.39 -0.02 0.87 16 50 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 51 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -75.94 402.40 1.30 -74.64 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: -0.46 Total: 35.71 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 5.67 Total: 2.41 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -5.73 Total: -129.25 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.08 Total: -31.49 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.90 Total: 47.99 kcal Total: -75.94 1.30 -74.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100329918.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.125 kcal (2) G-P(sol) polarization free energy of solvation -75.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds