Wall clock time and date at job start Tue Mar 31 2020 19:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47137 * 120.00240 * 2 1 3 5 5 H 1.08995 * 109.47453 * 299.99423 * 4 2 1 6 6 C 1.53003 * 109.47310 * 60.00160 * 4 2 1 7 7 C 1.50703 * 109.47149 * 179.97438 * 4 2 1 8 8 O 1.21286 * 119.99843 * 0.02562 * 7 4 2 9 9 N 1.34774 * 120.00596 * 179.97438 * 7 4 2 10 10 C 1.46499 * 120.00415 * 180.02562 * 9 7 4 11 11 H 1.09001 * 110.54491 * 34.65056 * 10 9 7 12 12 C 1.54837 * 110.61146 * 157.68840 * 10 9 7 13 13 C 1.55845 * 103.51912 * 118.50977 * 12 10 9 14 14 H 1.08998 * 116.14880 * 159.22337 * 13 12 10 15 15 C 1.55848 * 105.03323 * 288.26844 * 13 12 10 16 16 C 1.54835 * 103.51962 * 71.72843 * 15 13 12 17 17 C 1.55842 * 110.61380 * 271.78446 * 10 9 7 18 18 H 1.09006 * 116.15209 * 82.26022 * 17 10 9 19 19 N 1.50641 * 101.03084 * 208.49993 * 17 10 9 20 20 C 1.46906 * 111.00453 * 170.24282 * 19 17 10 21 21 C 1.50692 * 109.47478 * 67.63062 * 20 19 17 22 22 O 1.21296 * 119.99922 * 5.75864 * 21 20 19 23 23 N 1.34770 * 120.00345 * 185.75581 * 21 20 19 24 24 C 1.37105 * 120.00040 * 180.02562 * 23 21 20 25 25 H 1.07997 * 120.00181 * 0.02562 * 24 23 21 26 26 C 1.38956 * 119.99774 * 179.97438 * 24 23 21 27 27 N 1.31408 * 119.99802 * 0.02562 * 26 24 23 28 28 Si 1.86794 * 119.99915 * 180.02562 * 26 24 23 29 29 H 1.48495 * 109.47419 * 180.02562 * 28 26 24 30 30 H 1.48498 * 109.47340 * 59.99643 * 28 26 24 31 31 H 1.48502 * 109.47195 * 300.00051 * 28 26 24 32 32 H 1.09005 * 109.46969 * 299.99640 * 1 2 3 33 33 H 1.08992 * 109.47323 * 59.99975 * 1 2 3 34 34 H 1.08999 * 109.47238 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.46601 * 239.99980 * 2 1 3 36 36 H 1.09004 * 109.46987 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.46819 * 300.00194 * 3 2 1 38 38 H 1.09005 * 109.46883 * 60.00307 * 3 2 1 39 39 H 1.09004 * 109.46713 * 299.99735 * 6 4 2 40 40 H 1.08992 * 109.47035 * 59.99892 * 6 4 2 41 41 H 1.09001 * 109.46839 * 179.97438 * 6 4 2 42 42 H 0.97003 * 119.99779 * 0.02562 * 9 7 4 43 43 H 1.09001 * 110.61354 * 0.02562 * 12 10 9 44 44 H 1.09000 * 110.61243 * 237.01681 * 12 10 9 45 45 H 1.08994 * 110.61451 * 190.23935 * 15 13 12 46 46 H 1.09006 * 110.61369 * 313.22437 * 15 13 12 47 47 H 1.08998 * 110.61366 * 118.50862 * 16 15 13 48 48 H 1.09000 * 110.61590 * 241.33694 * 16 15 13 49 49 H 1.09008 * 109.46283 * 307.63216 * 20 19 17 50 50 H 1.08999 * 109.46931 * 187.63986 * 20 19 17 51 51 H 0.96999 * 119.99976 * 359.97438 * 23 21 20 52 52 H 0.96998 * 120.00300 * 359.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2491 7 6 3.5470 -0.7218 1.2489 8 8 4.1534 -0.1966 0.3393 9 7 4.2210 -1.3051 2.2598 10 6 5.6860 -1.3051 2.2597 11 1 6.0685 -0.3828 1.8224 12 6 6.2311 -1.4985 3.6960 13 6 7.0363 -2.8297 3.6039 14 1 7.7875 -2.9911 4.3769 15 6 5.9573 -3.9463 3.4703 16 6 5.4121 -3.7530 2.0341 17 6 6.2346 -2.5453 1.4918 18 1 6.2804 -2.4566 0.4063 19 7 7.5523 -2.7571 2.1904 20 6 8.1634 -4.0307 1.7870 21 6 8.5723 -3.9552 0.3386 22 8 8.4706 -2.9089 -0.2666 23 7 9.0509 -5.0501 -0.2845 24 6 9.4234 -4.9813 -1.6022 25 1 9.3336 -4.0495 -2.1408 26 6 9.9174 -6.1101 -2.2445 27 7 10.0270 -7.2438 -1.5890 28 14 10.4255 -6.0161 -4.0395 29 1 10.9144 -7.3454 -4.4859 30 1 11.5082 -5.0119 -4.1956 31 1 9.2572 -5.6165 -4.8645 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 1.8932 -0.5139 -0.8900 36 1 3.1300 1.4424 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6767 1.9563 0.8901 39 1 0.4400 -2.1638 1.2492 40 1 1.8933 -2.6776 0.3592 41 1 1.8938 -2.6778 2.1389 42 1 3.7360 -1.7249 2.9875 43 1 5.4113 -1.5948 4.4079 44 1 6.8861 -0.6722 3.9724 45 1 6.4096 -4.9320 3.5797 46 1 5.1642 -3.8034 4.2043 47 1 5.5942 -4.6428 1.4315 48 1 4.3482 -3.5169 2.0560 49 1 7.4425 -4.8375 1.9195 50 1 9.0417 -4.2234 2.4030 51 1 9.1326 -5.8868 0.1994 52 1 9.7635 -7.2925 -0.6568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109782500.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:06 Heat of formation + Delta-G solvation = -79.419764 kcal Electronic energy + Delta-G solvation = -31006.302310 eV Core-core repulsion = 27004.926292 eV Total energy + Delta-G solvation = -4001.376017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.40923 -40.86833 -39.87861 -37.13581 -36.42734 -35.66605 -33.28463 -32.59212 -31.63575 -31.03211 -29.80773 -28.19960 -27.83173 -25.97808 -25.25691 -23.27769 -22.49032 -21.75044 -20.97658 -20.55842 -20.39247 -19.96981 -18.37761 -18.02269 -17.48060 -17.12442 -16.90871 -16.54609 -16.08418 -15.71056 -15.57652 -15.45864 -15.36318 -14.87117 -14.74234 -14.42350 -13.85952 -13.77027 -13.47597 -13.40770 -13.31075 -13.08742 -13.06202 -12.97061 -12.90362 -12.72852 -12.63807 -12.57047 -12.42470 -12.06158 -11.95816 -11.94217 -11.90319 -11.84104 -11.62585 -11.53723 -11.47955 -11.17209 -10.56146 -10.41428 -10.14691 -9.99387 -9.53829 -8.97358 -6.10548 1.48320 1.49516 1.65793 1.78307 1.97874 2.12432 2.36687 2.74277 3.11568 3.16303 3.48706 3.58966 3.65052 3.78829 3.83009 3.94013 4.04529 4.08069 4.16552 4.25238 4.28121 4.30528 4.31340 4.41279 4.44911 4.49789 4.54947 4.59957 4.72197 4.80459 4.82962 4.89501 4.90017 4.92848 5.02613 5.03285 5.05467 5.13383 5.15209 5.22317 5.23382 5.33901 5.42121 5.48245 5.54405 5.58432 5.73628 5.89524 5.95271 6.54528 6.59485 6.72155 7.34740 7.40268 7.91383 8.50703 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.003030 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.059481 B = 9238.856934 C =10604.931317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.157 4.157 4 C -0.096 4.096 5 H 0.127 0.873 6 C -0.145 4.145 7 C 0.505 3.495 8 O -0.580 6.580 9 N -0.702 5.702 10 C 0.156 3.844 11 H 0.057 0.943 12 C -0.101 4.101 13 C 0.044 3.956 14 H 0.141 0.859 15 C -0.141 4.141 16 C -0.151 4.151 17 C 0.040 3.960 18 H 0.054 0.946 19 N -0.497 5.497 20 C 0.041 3.959 21 C 0.442 3.558 22 O -0.615 6.615 23 N -0.588 5.588 24 C -0.411 4.411 25 H 0.066 0.934 26 C -0.040 4.040 27 N -0.915 5.915 28 Si 1.132 2.868 29 H -0.267 1.267 30 H -0.273 1.273 31 H -0.276 1.276 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.037 0.963 41 H 0.079 0.921 42 H 0.417 0.583 43 H 0.118 0.882 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.111 0.889 47 H 0.038 0.962 48 H 0.092 0.908 49 H 0.078 0.922 50 H 0.111 0.889 51 H 0.384 0.616 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.579 7.938 18.177 28.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 C -0.214 4.214 4 C -0.117 4.117 5 H 0.145 0.855 6 C -0.202 4.202 7 C 0.293 3.707 8 O -0.460 6.460 9 N -0.355 5.355 10 C 0.050 3.950 11 H 0.076 0.924 12 C -0.139 4.139 13 C -0.063 4.063 14 H 0.159 0.841 15 C -0.180 4.180 16 C -0.190 4.190 17 C -0.070 4.070 18 H 0.073 0.927 19 N -0.221 5.221 20 C -0.091 4.091 21 C 0.230 3.770 22 O -0.501 6.501 23 N -0.228 5.228 24 C -0.540 4.540 25 H 0.084 0.916 26 C -0.238 4.238 27 N -0.554 5.554 28 Si 0.951 3.049 29 H -0.192 1.192 30 H -0.199 1.199 31 H -0.202 1.202 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.256 0.744 43 H 0.136 0.864 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.129 0.871 47 H 0.057 0.943 48 H 0.111 0.889 49 H 0.095 0.905 50 H 0.129 0.871 51 H 0.218 0.782 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.124 8.566 15.758 26.218 hybrid contribution -0.664 -0.357 0.973 1.231 sum -19.787 8.208 16.731 27.182 Atomic orbital electron populations 1.21868 0.92593 1.02765 1.02640 1.20908 0.96943 0.95817 0.96238 1.22016 1.01826 0.95927 1.01662 1.21428 0.88671 0.99927 1.01720 0.85488 1.21884 1.03349 0.92573 1.02411 1.21494 0.91591 0.76560 0.81041 1.90697 1.71654 1.46278 1.37337 1.45953 1.05877 1.58162 1.25530 1.21577 0.79888 0.96233 0.97336 0.92450 1.22860 1.00241 0.97373 0.93440 1.24778 0.95698 0.95440 0.90386 0.84117 1.23293 0.99645 0.99600 0.95440 1.23223 1.01505 0.96912 0.97333 1.24456 0.88636 0.96863 0.97055 0.92735 1.67395 1.21045 1.28986 1.04658 1.21981 1.01320 0.93795 0.91990 1.20921 0.82161 0.83594 0.90347 1.90522 1.59428 1.31195 1.68915 1.41980 1.58427 1.11053 1.11302 1.20470 1.45006 1.00087 0.88422 0.91553 1.27795 0.94996 0.90329 1.10728 1.70966 1.46450 1.26480 1.11493 0.82662 0.77089 0.76830 0.68288 1.19165 1.19892 1.20155 0.90945 0.92708 0.91286 0.93787 0.93234 0.93103 0.91706 0.88801 0.94362 0.90245 0.74446 0.86403 0.89753 0.90952 0.87070 0.94314 0.88945 0.90474 0.87072 0.78188 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.84 71.98 0.64 -1.14 16 2 C -0.08 -1.55 2.15 -10.80 -0.02 -1.57 16 3 C -0.16 -3.43 8.87 71.98 0.64 -2.79 16 4 C -0.10 -1.53 2.32 -11.54 -0.03 -1.56 16 5 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 6 C -0.14 -1.75 8.74 71.98 0.63 -1.12 16 7 C 0.50 12.54 6.86 87.66 0.60 13.15 16 8 O -0.58 -21.49 13.35 -3.05 -0.04 -21.53 16 9 N -0.70 -13.62 3.57 -434.94 -1.55 -15.17 16 10 C 0.16 4.12 3.11 46.60 0.14 4.27 16 11 H 0.06 2.00 7.63 -2.39 -0.02 1.98 16 12 C -0.10 -1.71 6.19 32.21 0.20 -1.51 16 13 C 0.04 0.87 4.96 46.15 0.23 1.10 16 14 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 15 C -0.14 -2.36 5.63 32.21 0.18 -2.17 16 16 C -0.15 -3.79 5.50 32.21 0.18 -3.61 16 17 C 0.04 1.38 4.12 46.15 0.19 1.57 16 18 H 0.05 2.65 6.95 -2.38 -0.02 2.64 16 19 N -0.50 -16.56 5.30 -808.86 -4.29 -20.85 16 20 C 0.04 1.48 5.15 85.55 0.44 1.92 16 21 C 0.44 22.64 7.47 87.66 0.65 23.30 16 22 O -0.62 -37.57 14.53 -3.08 -0.04 -37.61 16 23 N -0.59 -31.68 5.28 -306.99 -1.62 -33.30 16 24 C -0.41 -24.83 9.68 84.04 0.81 -24.02 16 25 H 0.07 4.37 7.16 -2.91 -0.02 4.35 16 26 C -0.04 -2.28 5.50 84.93 0.47 -1.81 16 27 N -0.91 -52.53 13.68 21.66 0.30 -52.23 16 28 Si 1.13 50.94 29.92 68.60 2.05 53.00 16 29 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 30 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 31 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 32 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.72 6.43 -2.39 -0.02 0.70 16 35 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 36 H 0.05 1.46 5.51 -2.39 -0.01 1.44 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.09 0.74 6.43 -2.39 -0.02 0.73 16 40 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.08 0.63 7.56 -2.39 -0.02 0.61 16 42 H 0.42 4.36 7.38 -92.71 -0.68 3.68 16 43 H 0.12 1.00 7.36 -2.39 -0.02 0.98 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.07 1.22 7.31 -2.39 -0.02 1.20 16 46 H 0.11 1.01 7.82 -2.38 -0.02 0.99 16 47 H 0.04 1.18 7.24 -2.39 -0.02 1.16 16 48 H 0.09 1.87 6.45 -2.39 -0.02 1.85 16 49 H 0.08 2.47 4.86 -2.38 -0.01 2.45 16 50 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 51 H 0.38 18.83 6.73 -92.71 -0.62 18.20 16 52 H 0.26 14.36 6.77 -92.71 -0.63 13.74 16 Total: -1.00 -87.17 393.02 0.53 -86.64 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: -0.23 Total: 37.08 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 5.95 Total: 3.99 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -7.17 Total: -121.56 kcal Atomic # 8 Polarization: -59.06 SS G_CDS: -0.09 Total: -59.14 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.05 Total: 53.00 kcal Total: -87.17 0.53 -86.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109782500.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.216 kcal (2) G-P(sol) polarization free energy of solvation -87.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds