Wall clock time and date at job start Tue Mar 31 2020 20:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47602 * 2 1 4 4 C 1.50704 * 109.47189 * 120.00000 * 2 1 3 5 5 O 1.21283 * 120.00177 * 119.99485 * 4 2 1 6 6 N 1.34780 * 119.99989 * 300.00222 * 4 2 1 7 7 C 1.46495 * 119.99961 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47048 * 176.60908 * 7 6 4 9 9 N 1.46498 * 109.47031 * 54.63194 * 8 7 6 10 10 C 1.36935 * 120.00344 * 62.88025 * 9 8 7 11 11 H 1.08008 * 119.99558 * 353.97864 * 10 9 8 12 12 C 1.38807 * 120.00264 * 174.26404 * 10 9 8 13 13 N 1.31621 * 119.99936 * 359.71974 * 12 10 9 14 14 Si 1.86806 * 119.99972 * 179.72547 * 12 10 9 15 15 H 1.48501 * 109.47047 * 89.99446 * 14 12 10 16 16 H 1.48494 * 109.46921 * 209.99396 * 14 12 10 17 17 H 1.48498 * 109.47216 * 329.99548 * 14 12 10 18 18 C 1.53002 * 109.47124 * 174.62907 * 8 7 6 19 19 C 1.53001 * 109.47124 * 180.02562 * 18 8 7 20 20 C 1.52999 * 109.47038 * 300.00353 * 19 18 8 21 21 C 1.53002 * 109.47451 * 59.99847 * 20 19 18 22 22 C 1.52993 * 109.46917 * 300.00015 * 21 20 19 23 23 C 1.53003 * 109.47176 * 239.99871 * 2 1 3 24 24 H 1.09005 * 110.21401 * 185.70284 * 23 2 1 25 25 C 1.54473 * 110.24492 * 63.77545 * 23 2 1 26 26 C 1.54632 * 101.76238 * 215.58342 * 25 23 2 27 27 C 1.51282 * 104.19697 * 24.79934 * 26 25 23 28 28 O 1.21279 * 124.94129 * 163.77377 * 27 26 25 29 29 N 1.34563 * 110.13834 * 343.67035 * 27 26 25 30 30 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47119 * 300.00128 * 1 2 3 32 32 H 1.09004 * 109.47043 * 59.99913 * 1 2 3 33 33 H 0.96996 * 119.99823 * 359.97438 * 6 4 2 34 34 H 1.09004 * 109.47295 * 56.61491 * 7 6 4 35 35 H 1.08995 * 109.47414 * 296.60889 * 7 6 4 36 36 H 0.97006 * 120.00019 * 242.88217 * 9 8 7 37 37 H 0.97006 * 119.99903 * 180.02562 * 13 12 10 38 38 H 1.09003 * 109.47125 * 300.00463 * 18 8 7 39 39 H 1.08999 * 109.47281 * 60.00314 * 18 8 7 40 40 H 1.09003 * 109.47023 * 179.97438 * 19 18 8 41 41 H 1.08999 * 109.46784 * 60.00010 * 19 18 8 42 42 H 1.08999 * 109.47053 * 299.99493 * 20 19 18 43 43 H 1.09000 * 109.46821 * 179.97438 * 20 19 18 44 44 H 1.08994 * 109.46957 * 179.97438 * 21 20 19 45 45 H 1.08997 * 109.46871 * 60.00122 * 21 20 19 46 46 H 1.08997 * 109.47437 * 299.99760 * 22 21 20 47 47 H 1.08997 * 109.47156 * 179.97438 * 22 21 20 48 48 H 1.09001 * 110.96970 * 333.69868 * 25 23 2 49 49 H 1.08995 * 110.97570 * 97.46346 * 25 23 2 50 50 H 1.09000 * 110.48522 * 143.47301 * 26 25 23 51 51 H 1.08997 * 110.48699 * 266.11627 * 26 25 23 52 52 H 0.97000 * 124.43272 * 179.64307 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6966 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1946 -0.9409 3.6507 8 6 1.7555 -0.1720 4.8986 9 7 0.3022 0.0109 4.8732 10 6 -0.5259 -1.0791 4.9084 11 1 -0.1105 -2.0747 4.8566 12 6 -1.8996 -0.9044 5.0046 13 7 -2.4058 0.3090 5.0675 14 14 -3.0297 -2.3912 5.0448 15 1 -3.2355 -2.8186 6.4520 16 1 -4.3380 -2.0351 4.4393 17 1 -2.4140 -3.5020 4.2752 18 6 2.1483 -0.9618 6.1487 19 6 1.7086 -0.1932 7.3965 20 6 2.3940 1.1745 7.4209 21 6 2.0012 1.9642 6.1707 22 6 2.4408 1.1957 4.9230 23 6 2.0400 -0.7213 -1.2492 24 1 3.1252 -0.8172 -1.2121 25 6 1.6144 0.0459 -2.5206 26 6 1.3450 -1.1105 -3.5113 27 6 1.0201 -2.2915 -2.6234 28 8 0.4822 -3.3129 -2.9953 29 7 1.4166 -2.0453 -1.3613 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.1493 0.5389 2.5436 34 1 3.2829 -0.9942 3.6211 35 1 1.7821 -1.9493 3.6815 36 1 -0.0735 0.9043 4.8314 37 1 -3.3658 0.4311 5.1351 38 1 1.6597 -1.9360 6.1315 39 1 3.2296 -1.0979 6.1677 40 1 1.9881 -0.7561 8.2872 41 1 0.6273 -0.0575 7.3774 42 1 3.4753 1.0387 7.4401 43 1 2.0804 1.7221 8.3096 44 1 2.4891 2.9387 6.1884 45 1 0.9199 2.1000 6.1517 46 1 3.5221 1.0599 4.9421 47 1 2.1606 1.7580 4.0324 48 1 0.7085 0.6252 -2.3418 49 1 2.4207 0.6861 -2.8783 50 1 0.4978 -0.8723 -4.1544 51 1 2.2331 -1.3154 -4.1090 52 1 1.3043 -2.6618 -0.6210 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115742269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:04 Heat of formation + Delta-G solvation = -85.478599 kcal Electronic energy + Delta-G solvation = -31342.932668 eV Core-core repulsion = 27341.293919 eV Total energy + Delta-G solvation = -4001.638748 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.77750 -39.46848 -38.50010 -36.66078 -34.51219 -33.43886 -32.80149 -31.32971 -31.05896 -30.28165 -28.60806 -27.07036 -25.73766 -23.94938 -23.83138 -22.19140 -21.33063 -20.61021 -20.38768 -19.58666 -18.36151 -17.26971 -17.00158 -16.87675 -16.59215 -15.58659 -15.22875 -14.99207 -14.70605 -14.45202 -14.09622 -13.91507 -13.73001 -13.67617 -13.63612 -13.39089 -13.18264 -12.81473 -12.75874 -12.32134 -12.10270 -11.95076 -11.88084 -11.75020 -11.63499 -11.49936 -11.21777 -11.15870 -11.00563 -10.91161 -10.81311 -10.58896 -10.21204 -10.08186 -9.86291 -9.84719 -9.68432 -9.45180 -9.35259 -9.04032 -8.92228 -8.51362 -7.06207 -5.85818 -3.14744 2.62678 2.92213 3.38358 3.43287 3.45639 3.46940 3.54543 4.24068 4.27315 4.51729 4.54596 4.81343 4.91936 5.03431 5.09480 5.14787 5.21099 5.23913 5.31836 5.44945 5.50613 5.52198 5.55422 5.56906 5.68512 5.77194 5.78423 5.87863 5.93054 5.94436 5.99342 6.07112 6.11774 6.14529 6.25268 6.28995 6.40438 6.45048 6.54760 6.74234 6.75935 6.77352 6.85492 6.93395 7.01764 7.13933 7.16498 7.66733 7.95764 8.30505 8.32304 8.57736 9.45206 9.97346 10.33972 11.35891 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011274 B = 0.003722 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.018724 B = 7520.058871 C = 8995.045154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 H 0.108 0.892 4 C 0.510 3.490 5 O -0.558 6.558 6 N -0.695 5.695 7 C 0.115 3.885 8 C 0.191 3.809 9 N -0.709 5.709 10 C -0.230 4.230 11 H 0.068 0.932 12 C -0.006 4.006 13 N -0.930 5.930 14 Si 0.897 3.103 15 H -0.291 1.291 16 H -0.293 1.293 17 H -0.283 1.283 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.112 4.112 21 C -0.115 4.115 22 C -0.112 4.112 23 C 0.152 3.848 24 H 0.088 0.912 25 C -0.133 4.133 26 C -0.155 4.155 27 C 0.515 3.485 28 O -0.544 6.544 29 N -0.711 5.711 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.403 0.597 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.384 0.616 37 H 0.254 0.746 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.100 0.900 51 H 0.102 0.898 52 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.198 7.098 -8.232 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 H 0.126 0.874 4 C 0.296 3.704 5 O -0.437 6.437 6 N -0.344 5.344 7 C -0.012 4.012 8 C 0.099 3.901 9 N -0.351 5.351 10 C -0.361 4.361 11 H 0.086 0.914 12 C -0.202 4.202 13 N -0.578 5.578 14 Si 0.729 3.271 15 H -0.218 1.218 16 H -0.219 1.219 17 H -0.209 1.209 18 C -0.154 4.154 19 C -0.147 4.147 20 C -0.150 4.150 21 C -0.153 4.153 22 C -0.150 4.150 23 C 0.046 3.954 24 H 0.106 0.894 25 C -0.171 4.171 26 C -0.195 4.195 27 C 0.301 3.699 28 O -0.422 6.422 29 N -0.367 5.367 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.239 0.761 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.219 0.781 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.108 0.892 49 H 0.109 0.891 50 H 0.118 0.882 51 H 0.120 0.880 52 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 11.322 5.788 -8.547 15.321 hybrid contribution -1.159 -0.442 0.594 1.375 sum 10.163 5.345 -7.953 13.968 Atomic orbital electron populations 1.21801 0.91911 1.03524 1.03064 1.21661 0.98696 1.00959 0.92973 0.87423 1.20412 0.80373 0.84789 0.84874 1.90668 1.39322 1.26739 1.87015 1.45780 1.51841 1.31725 1.05056 1.21877 0.96917 0.97146 0.85237 1.19814 0.86440 0.92434 0.91422 1.42441 0.97973 1.06733 1.87963 1.19045 0.87614 0.87376 1.42074 0.91418 1.24637 0.96761 0.96007 1.02790 1.69639 1.11563 1.19240 1.57406 0.86343 0.80715 0.82488 0.77581 1.21797 1.21931 1.20889 1.21790 0.98382 0.99745 0.95522 1.21373 1.02572 0.94503 0.96271 1.21468 0.99229 0.96907 0.97385 1.21471 1.02308 0.97103 0.94423 1.21677 0.99324 0.96239 0.97808 1.21431 0.98011 0.82361 0.93629 0.89371 1.22801 1.03462 0.97258 0.93566 1.22331 1.04474 0.94185 0.98540 1.20906 0.77138 0.88162 0.83692 1.90746 1.43597 1.30070 1.77741 1.46347 1.60200 1.19137 1.11022 0.91829 0.90853 0.91596 0.76054 0.92935 0.91865 0.78087 0.93602 0.91803 0.93797 0.93800 0.89809 0.93263 0.93037 0.93311 0.90708 0.92341 0.92526 0.89242 0.89063 0.88172 0.87966 0.74348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.66 37.16 0.32 -1.37 16 2 C -0.12 -1.30 2.59 -91.77 -0.24 -1.53 16 3 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 4 C 0.51 7.52 6.97 -10.98 -0.08 7.45 16 5 O -0.56 -9.88 14.95 5.55 0.08 -9.80 16 6 N -0.69 -10.57 4.99 -60.29 -0.30 -10.87 16 7 C 0.11 1.92 4.37 -4.04 -0.02 1.90 16 8 C 0.19 3.17 0.41 -131.82 -0.05 3.11 16 9 N -0.71 -14.44 3.40 -47.23 -0.16 -14.60 16 10 C -0.23 -5.55 8.70 -15.06 -0.13 -5.68 16 11 H 0.07 1.68 6.78 -52.48 -0.36 1.33 16 12 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 13 N -0.93 -25.38 13.07 55.49 0.73 -24.65 16 14 Si 0.90 21.56 29.55 -169.99 -5.02 16.54 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 18 C -0.11 -1.90 4.52 -26.73 -0.12 -2.02 16 19 C -0.11 -1.79 5.77 -26.73 -0.15 -1.94 16 20 C -0.11 -1.58 5.92 -26.73 -0.16 -1.74 16 21 C -0.12 -1.64 5.75 -26.73 -0.15 -1.80 16 22 C -0.11 -1.58 4.65 -26.73 -0.12 -1.71 16 23 C 0.15 1.54 2.72 -67.01 -0.18 1.36 16 24 H 0.09 0.92 7.95 -51.93 -0.41 0.50 16 25 C -0.13 -0.94 6.53 -25.10 -0.16 -1.10 16 26 C -0.16 -1.35 6.86 -26.74 -0.18 -1.53 16 27 C 0.52 7.07 8.43 -10.80 -0.09 6.98 16 28 O -0.54 -9.92 18.03 5.56 0.10 -9.82 16 29 N -0.71 -9.33 4.59 -52.73 -0.24 -9.57 16 30 H 0.06 0.89 7.45 -51.93 -0.39 0.50 16 31 H 0.07 0.94 7.56 -51.93 -0.39 0.55 16 32 H 0.07 0.62 6.30 -51.93 -0.33 0.29 16 33 H 0.40 5.98 6.81 -40.82 -0.28 5.70 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 1.24 7.50 -51.93 -0.39 0.85 16 36 H 0.38 8.45 6.63 -40.82 -0.27 8.18 16 37 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.06 1.18 7.24 -51.93 -0.38 0.80 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 1.67 7.60 -51.93 -0.39 1.27 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 1.25 6.92 -51.93 -0.36 0.89 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.76 7.28 -51.93 -0.38 0.38 16 48 H 0.09 0.58 6.04 -51.93 -0.31 0.27 16 49 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 51 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 52 H 0.42 6.33 8.00 -40.82 -0.33 6.00 16 LS Contribution 396.17 15.07 5.97 5.97 Total: -1.00 -30.26 396.17 -9.22 -39.48 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -8.75 Total: 17.21 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.62 Total: 0.12 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.02 Total: -59.70 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.18 Total: -19.62 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.26 -9.22 -39.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115742269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.001 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds