Wall clock time and date at job start Tue Mar 31 2020 20:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47602 * 2 1 4 4 C 1.50704 * 109.47189 * 120.00000 * 2 1 3 5 5 O 1.21283 * 120.00177 * 119.99485 * 4 2 1 6 6 N 1.34780 * 119.99989 * 300.00222 * 4 2 1 7 7 C 1.46495 * 119.99961 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47048 * 176.60908 * 7 6 4 9 9 N 1.46498 * 109.47031 * 54.63194 * 8 7 6 10 10 C 1.36935 * 120.00344 * 62.88025 * 9 8 7 11 11 H 1.08008 * 119.99558 * 353.97864 * 10 9 8 12 12 C 1.38807 * 120.00264 * 174.26404 * 10 9 8 13 13 N 1.31621 * 119.99936 * 359.71974 * 12 10 9 14 14 Si 1.86806 * 119.99972 * 179.72547 * 12 10 9 15 15 H 1.48501 * 109.47047 * 89.99446 * 14 12 10 16 16 H 1.48494 * 109.46921 * 209.99396 * 14 12 10 17 17 H 1.48498 * 109.47216 * 329.99548 * 14 12 10 18 18 C 1.53002 * 109.47124 * 174.62907 * 8 7 6 19 19 C 1.53001 * 109.47124 * 180.02562 * 18 8 7 20 20 C 1.52999 * 109.47038 * 300.00353 * 19 18 8 21 21 C 1.53002 * 109.47451 * 59.99847 * 20 19 18 22 22 C 1.52993 * 109.46917 * 300.00015 * 21 20 19 23 23 C 1.53003 * 109.47176 * 239.99871 * 2 1 3 24 24 H 1.09005 * 110.21401 * 185.70284 * 23 2 1 25 25 C 1.54473 * 110.24492 * 63.77545 * 23 2 1 26 26 C 1.54632 * 101.76238 * 215.58342 * 25 23 2 27 27 C 1.51282 * 104.19697 * 24.79934 * 26 25 23 28 28 O 1.21279 * 124.94129 * 163.77377 * 27 26 25 29 29 N 1.34563 * 110.13834 * 343.67035 * 27 26 25 30 30 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47119 * 300.00128 * 1 2 3 32 32 H 1.09004 * 109.47043 * 59.99913 * 1 2 3 33 33 H 0.96996 * 119.99823 * 359.97438 * 6 4 2 34 34 H 1.09004 * 109.47295 * 56.61491 * 7 6 4 35 35 H 1.08995 * 109.47414 * 296.60889 * 7 6 4 36 36 H 0.97006 * 120.00019 * 242.88217 * 9 8 7 37 37 H 0.97006 * 119.99903 * 180.02562 * 13 12 10 38 38 H 1.09003 * 109.47125 * 300.00463 * 18 8 7 39 39 H 1.08999 * 109.47281 * 60.00314 * 18 8 7 40 40 H 1.09003 * 109.47023 * 179.97438 * 19 18 8 41 41 H 1.08999 * 109.46784 * 60.00010 * 19 18 8 42 42 H 1.08999 * 109.47053 * 299.99493 * 20 19 18 43 43 H 1.09000 * 109.46821 * 179.97438 * 20 19 18 44 44 H 1.08994 * 109.46957 * 179.97438 * 21 20 19 45 45 H 1.08997 * 109.46871 * 60.00122 * 21 20 19 46 46 H 1.08997 * 109.47437 * 299.99760 * 22 21 20 47 47 H 1.08997 * 109.47156 * 179.97438 * 22 21 20 48 48 H 1.09001 * 110.96970 * 333.69868 * 25 23 2 49 49 H 1.08995 * 110.97570 * 97.46346 * 25 23 2 50 50 H 1.09000 * 110.48522 * 143.47301 * 26 25 23 51 51 H 1.08997 * 110.48699 * 266.11627 * 26 25 23 52 52 H 0.97000 * 124.43272 * 179.64307 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6966 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1946 -0.9409 3.6507 8 6 1.7555 -0.1720 4.8986 9 7 0.3022 0.0109 4.8732 10 6 -0.5259 -1.0791 4.9084 11 1 -0.1105 -2.0747 4.8566 12 6 -1.8996 -0.9044 5.0046 13 7 -2.4058 0.3090 5.0675 14 14 -3.0297 -2.3912 5.0448 15 1 -3.2355 -2.8186 6.4520 16 1 -4.3380 -2.0351 4.4393 17 1 -2.4140 -3.5020 4.2752 18 6 2.1483 -0.9618 6.1487 19 6 1.7086 -0.1932 7.3965 20 6 2.3940 1.1745 7.4209 21 6 2.0012 1.9642 6.1707 22 6 2.4408 1.1957 4.9230 23 6 2.0400 -0.7213 -1.2492 24 1 3.1252 -0.8172 -1.2121 25 6 1.6144 0.0459 -2.5206 26 6 1.3450 -1.1105 -3.5113 27 6 1.0201 -2.2915 -2.6234 28 8 0.4822 -3.3129 -2.9953 29 7 1.4166 -2.0453 -1.3613 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.1493 0.5389 2.5436 34 1 3.2829 -0.9942 3.6211 35 1 1.7821 -1.9493 3.6815 36 1 -0.0735 0.9043 4.8314 37 1 -3.3658 0.4311 5.1351 38 1 1.6597 -1.9360 6.1315 39 1 3.2296 -1.0979 6.1677 40 1 1.9881 -0.7561 8.2872 41 1 0.6273 -0.0575 7.3774 42 1 3.4753 1.0387 7.4401 43 1 2.0804 1.7221 8.3096 44 1 2.4891 2.9387 6.1884 45 1 0.9199 2.1000 6.1517 46 1 3.5221 1.0599 4.9421 47 1 2.1606 1.7580 4.0324 48 1 0.7085 0.6252 -2.3418 49 1 2.4207 0.6861 -2.8783 50 1 0.4978 -0.8723 -4.1544 51 1 2.2331 -1.3154 -4.1090 52 1 1.3043 -2.6618 -0.6210 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115742269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:03 Heat of formation + Delta-G solvation = -106.136242 kcal Electronic energy + Delta-G solvation = -31343.828450 eV Core-core repulsion = 27341.293919 eV Total energy + Delta-G solvation = -4002.534531 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.77836 -40.71837 -39.77477 -37.75490 -35.85437 -35.07506 -33.94635 -32.58822 -32.11624 -31.54314 -30.22498 -27.96271 -26.96906 -25.70602 -24.90757 -23.44264 -22.28272 -21.66208 -21.53362 -20.69860 -19.78003 -19.03387 -18.10983 -17.91126 -17.57703 -16.91168 -16.65235 -16.20290 -15.96823 -15.75055 -15.58038 -15.29408 -14.94715 -14.90558 -14.70418 -14.49808 -14.30320 -14.22112 -13.56104 -13.41229 -13.39398 -13.24416 -13.12848 -12.90555 -12.84705 -12.75113 -12.60278 -12.54728 -12.42115 -12.07989 -12.06558 -11.87620 -11.72338 -11.68273 -11.31498 -11.08384 -10.93018 -10.83055 -10.69451 -10.57376 -10.06419 -9.84201 -8.89815 -7.89087 -5.12017 1.40569 1.45299 1.48569 1.59583 1.73772 2.39573 2.46573 2.56980 3.42641 3.45092 3.48687 3.79832 3.82785 3.91374 3.94627 4.03801 4.10092 4.15430 4.28600 4.32113 4.39913 4.46802 4.50008 4.67967 4.76547 4.77456 4.78638 4.82251 4.83213 4.88076 4.91043 4.93718 4.98366 5.09112 5.17166 5.18922 5.21280 5.23163 5.38188 5.47671 5.50825 5.52269 5.60141 5.61598 5.71367 5.81456 5.83487 6.12710 6.34702 6.73119 7.22395 7.37117 7.44217 8.17188 8.43578 9.33040 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011274 B = 0.003722 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.018724 B = 7520.058871 C = 8995.045154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 H 0.150 0.850 4 C 0.504 3.496 5 O -0.590 6.590 6 N -0.695 5.695 7 C 0.123 3.877 8 C 0.190 3.810 9 N -0.706 5.706 10 C -0.202 4.202 11 H 0.057 0.943 12 C -0.056 4.056 13 N -0.955 5.955 14 Si 0.937 3.063 15 H -0.294 1.294 16 H -0.300 1.300 17 H -0.288 1.288 18 C -0.114 4.114 19 C -0.107 4.107 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.105 4.105 23 C 0.146 3.854 24 H 0.091 0.909 25 C -0.117 4.117 26 C -0.145 4.145 27 C 0.500 3.500 28 O -0.603 6.603 29 N -0.718 5.718 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.407 0.593 34 H 0.066 0.934 35 H 0.025 0.975 36 H 0.378 0.622 37 H 0.246 0.754 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.043 0.957 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.101 0.899 49 H 0.130 0.870 50 H 0.114 0.886 51 H 0.123 0.877 52 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.765 9.880 -9.389 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 H 0.168 0.832 4 C 0.292 3.708 5 O -0.472 6.472 6 N -0.344 5.344 7 C -0.004 4.004 8 C 0.099 3.901 9 N -0.347 5.347 10 C -0.335 4.335 11 H 0.075 0.925 12 C -0.249 4.249 13 N -0.607 5.607 14 Si 0.770 3.230 15 H -0.222 1.222 16 H -0.227 1.227 17 H -0.214 1.214 18 C -0.154 4.154 19 C -0.144 4.144 20 C -0.145 4.145 21 C -0.150 4.150 22 C -0.143 4.143 23 C 0.041 3.959 24 H 0.108 0.892 25 C -0.154 4.154 26 C -0.184 4.184 27 C 0.289 3.711 28 O -0.485 6.485 29 N -0.370 5.370 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.244 0.756 34 H 0.084 0.916 35 H 0.043 0.957 36 H 0.212 0.788 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.062 0.938 46 H 0.101 0.899 47 H 0.085 0.915 48 H 0.119 0.881 49 H 0.148 0.852 50 H 0.132 0.868 51 H 0.141 0.859 52 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 13.938 8.603 -9.699 19.035 hybrid contribution -1.843 -1.392 1.014 2.522 sum 12.095 7.211 -8.685 16.544 Atomic orbital electron populations 1.21759 0.92587 1.01610 1.03884 1.21700 0.97736 1.02627 0.90922 0.83245 1.21201 0.79531 0.84404 0.85713 1.90656 1.40845 1.28192 1.87495 1.45786 1.51942 1.31693 1.04993 1.21669 0.97400 0.95330 0.85996 1.20021 0.84258 0.94546 0.91276 1.42441 0.99542 1.05269 1.87468 1.19104 0.87862 0.87976 1.38564 0.92538 1.25020 0.97897 0.97139 1.04872 1.69720 1.10936 1.20012 1.59989 0.85687 0.79433 0.80846 0.77012 1.22175 1.22672 1.21398 1.21785 0.99776 0.98244 0.95612 1.21302 1.00084 0.96480 0.96563 1.21449 1.00309 0.95073 0.97685 1.21437 1.00600 0.98536 0.94447 1.21644 1.00255 0.94075 0.98333 1.21711 0.97950 0.81226 0.94998 0.89150 1.22881 1.05340 0.96529 0.90679 1.22383 1.05818 0.92069 0.98172 1.21907 0.75950 0.88819 0.84427 1.90700 1.46274 1.32777 1.78771 1.46630 1.59759 1.20117 1.10520 0.95091 0.92246 0.88560 0.75646 0.91626 0.95677 0.78784 0.94461 0.94699 0.91057 0.92770 0.94122 0.90805 0.92385 0.90573 0.93801 0.89916 0.91533 0.88053 0.85224 0.86820 0.85935 0.76385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.66 71.98 0.62 -2.46 16 2 C -0.11 -2.05 2.59 -11.54 -0.03 -2.08 16 3 H 0.15 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.50 14.40 6.97 87.66 0.61 15.01 16 5 O -0.59 -20.89 14.95 -3.04 -0.05 -20.94 16 6 N -0.69 -20.59 4.99 -463.06 -2.31 -22.90 16 7 C 0.12 4.07 4.37 86.38 0.38 4.45 16 8 C 0.19 6.14 0.41 3.61 0.00 6.14 16 9 N -0.71 -29.17 3.40 -303.34 -1.03 -30.21 16 10 C -0.20 -10.07 8.70 84.03 0.73 -9.34 16 11 H 0.06 2.93 6.78 -2.91 -0.02 2.91 16 12 C -0.06 -3.01 5.50 84.86 0.47 -2.55 16 13 N -0.96 -53.50 13.07 21.65 0.28 -53.22 16 14 Si 0.94 45.84 29.55 68.60 2.03 47.87 16 15 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 16 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 17 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 18 C -0.11 -3.71 4.52 30.60 0.14 -3.58 16 19 C -0.11 -3.41 5.77 30.59 0.18 -3.23 16 20 C -0.11 -2.75 5.92 30.59 0.18 -2.57 16 21 C -0.11 -2.91 5.75 30.59 0.18 -2.74 16 22 C -0.11 -2.66 4.65 30.59 0.14 -2.52 16 23 C 0.15 2.60 2.72 45.44 0.12 2.72 16 24 H 0.09 1.62 7.95 -2.38 -0.02 1.60 16 25 C -0.12 -1.11 6.53 31.65 0.21 -0.90 16 26 C -0.14 -2.08 6.86 30.59 0.21 -1.87 16 27 C 0.50 13.64 8.43 87.88 0.74 14.38 16 28 O -0.60 -22.87 18.03 -3.03 -0.05 -22.92 16 29 N -0.72 -18.81 4.59 -439.24 -2.01 -20.82 16 30 H 0.03 0.87 7.45 -2.39 -0.02 0.85 16 31 H 0.06 1.47 7.56 -2.39 -0.02 1.45 16 32 H 0.10 1.51 6.30 -2.39 -0.02 1.50 16 33 H 0.41 11.57 6.81 -92.71 -0.63 10.94 16 34 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 35 H 0.02 1.01 7.50 -2.39 -0.02 1.00 16 36 H 0.38 16.82 6.63 -92.70 -0.61 16.21 16 37 H 0.25 13.80 8.31 -92.70 -0.77 13.03 16 38 H 0.03 1.31 7.24 -2.39 -0.02 1.29 16 39 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.04 1.65 7.60 -2.39 -0.02 1.63 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.04 1.42 6.92 -2.39 -0.02 1.41 16 46 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.07 1.58 7.28 -2.39 -0.02 1.56 16 48 H 0.10 0.78 6.04 -2.39 -0.01 0.76 16 49 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 50 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 52 H 0.40 12.79 8.00 -92.71 -0.74 12.05 16 Total: -1.00 -71.59 396.17 0.69 -70.90 By element: Atomic # 1 Polarization: 44.39 SS G_CDS: -1.04 Total: 43.35 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 4.88 Total: 8.89 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -5.07 Total: -127.14 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.10 Total: -43.86 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -71.59 0.69 -70.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115742269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.232 kcal (2) G-P(sol) polarization free energy of solvation -71.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds