Wall clock time and date at job start Tue Mar 31 2020 20:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47243 * 2 1 4 4 C 1.50696 * 109.47331 * 239.99681 * 2 1 3 5 5 O 1.21286 * 120.00225 * 240.00153 * 4 2 1 6 6 N 1.34777 * 119.99919 * 60.00255 * 4 2 1 7 7 C 1.46500 * 120.00132 * 180.27581 * 6 4 2 8 8 C 1.53005 * 109.47405 * 177.01066 * 7 6 4 9 9 N 1.46500 * 109.47027 * 305.25065 * 8 7 6 10 10 C 1.36941 * 119.99925 * 299.91653 * 9 8 7 11 11 H 1.08000 * 119.99613 * 354.04786 * 10 9 8 12 12 C 1.38802 * 120.00106 * 174.04259 * 10 9 8 13 13 N 1.31615 * 120.00229 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00247 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46854 * 59.99968 * 14 12 10 16 16 H 1.48496 * 109.47301 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47056 * 300.00396 * 14 12 10 18 18 C 1.52996 * 109.47280 * 185.24414 * 8 7 6 19 19 C 1.53005 * 109.46970 * 179.97438 * 18 8 7 20 20 C 1.53000 * 109.46577 * 60.00445 * 19 18 8 21 21 C 1.52996 * 109.47107 * 299.99471 * 20 19 18 22 22 C 1.53000 * 109.46605 * 65.24653 * 8 7 6 23 23 C 1.53003 * 109.47348 * 119.99710 * 2 1 3 24 24 H 1.08993 * 110.22001 * 178.07113 * 23 2 1 25 25 C 1.54473 * 110.24558 * 300.00632 * 23 2 1 26 26 C 1.54628 * 101.76975 * 93.57764 * 25 23 2 27 27 C 1.51280 * 104.19396 * 24.80023 * 26 25 23 28 28 O 1.21278 * 124.93973 * 163.71618 * 27 26 25 29 29 N 1.34420 * 110.11617 * 343.74725 * 27 26 25 30 30 H 1.08996 * 109.47243 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46896 * 300.00309 * 1 2 3 32 32 H 1.09000 * 109.46393 * 59.99940 * 1 2 3 33 33 H 0.97003 * 119.99860 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.47258 * 297.01115 * 7 6 4 35 35 H 1.09005 * 109.47160 * 57.00873 * 7 6 4 36 36 H 0.96994 * 120.00459 * 119.92007 * 9 8 7 37 37 H 0.97005 * 120.00694 * 179.97438 * 13 12 10 38 38 H 1.08993 * 109.47492 * 300.00647 * 18 8 7 39 39 H 1.09003 * 109.46900 * 60.00666 * 18 8 7 40 40 H 1.08993 * 109.47350 * 300.00340 * 19 18 8 41 41 H 1.09000 * 109.46665 * 180.02562 * 19 18 8 42 42 H 1.09000 * 109.46577 * 179.97438 * 20 19 18 43 43 H 1.09002 * 109.47253 * 60.00180 * 20 19 18 44 44 H 1.08993 * 109.47362 * 300.00437 * 21 20 19 45 45 H 1.09003 * 109.46900 * 179.97438 * 21 20 19 46 46 H 1.09000 * 109.47290 * 299.99606 * 22 8 7 47 47 H 1.08993 * 109.47366 * 60.00301 * 22 8 7 48 48 H 1.08999 * 110.97271 * 211.70069 * 25 23 2 49 49 H 1.09007 * 110.97018 * 335.42130 * 25 23 2 50 50 H 1.09004 * 110.48671 * 143.47542 * 26 25 23 51 51 H 1.09003 * 110.48554 * 266.11664 * 26 25 23 52 52 H 0.96997 * 124.34707 * 179.60161 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6966 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1902 -0.9442 -3.6506 8 6 1.6207 -0.2666 -4.8987 9 7 0.1601 -0.2105 -4.8004 10 6 -0.5640 -1.3680 -4.6945 11 1 -0.0692 -2.3242 -4.7799 12 6 -1.9338 -1.3124 -4.4772 13 7 -2.5369 -0.1472 -4.3735 14 14 -2.9214 -2.8913 -4.3320 15 1 -2.4095 -3.6922 -3.1910 16 1 -4.3513 -2.5617 -4.1039 17 1 -2.7886 -3.6754 -5.5861 18 6 2.0180 -1.0677 -6.1401 19 6 1.4479 -0.3905 -7.3881 20 6 2.0061 1.0298 -7.4975 21 6 1.6088 1.8309 -6.2560 22 6 2.1794 1.1535 -5.0078 23 6 2.0401 -0.7212 1.2493 24 1 3.1294 -0.7582 1.2445 25 6 1.5349 -0.0070 2.5225 26 6 0.2433 -0.7972 2.8359 27 6 0.4699 -2.1482 2.1941 28 8 -0.1700 -3.1491 2.4379 29 7 1.4843 -2.0780 1.3149 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 1.1495 0.5389 -2.5435 34 1 3.2790 -0.9028 -3.6797 35 1 1.8668 -1.9847 -3.6225 36 1 -0.2942 0.6464 -4.8104 37 1 -3.4942 -0.1082 -4.2220 38 1 3.1046 -1.1095 -6.2132 39 1 1.6199 -2.0795 -6.0624 40 1 0.3612 -0.3492 -7.3147 41 1 1.7306 -0.9615 -8.2725 42 1 1.6003 1.5121 -8.3868 43 1 3.0929 0.9885 -7.5709 44 1 0.5221 1.8722 -6.1827 45 1 2.0069 2.8427 -6.3338 46 1 1.8963 1.7243 -4.1234 47 1 3.2661 1.1118 -5.0809 48 1 2.2561 -0.1005 3.3344 49 1 1.3125 1.0407 2.3198 50 1 0.1130 -0.9035 3.9129 51 1 -0.6223 -0.3046 2.3928 52 1 1.8073 -2.8277 0.7910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115742270.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:07 Heat of formation + Delta-G solvation = -81.938834 kcal Electronic energy + Delta-G solvation = -31721.872932 eV Core-core repulsion = 27720.387679 eV Total energy + Delta-G solvation = -4001.485253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.88843 -39.40111 -38.41981 -36.61422 -34.48056 -33.36960 -32.47231 -31.26140 -30.95486 -30.29639 -28.57088 -27.54096 -25.60466 -23.80750 -23.69382 -22.21311 -21.32450 -20.53750 -20.32871 -19.53164 -18.36084 -17.26604 -17.15646 -16.90361 -16.29942 -15.41535 -15.31212 -15.07442 -14.60968 -14.37321 -14.09854 -13.82885 -13.77798 -13.64099 -13.46576 -13.23982 -12.95819 -12.81280 -12.73588 -12.24786 -12.14419 -11.98468 -11.78877 -11.74864 -11.64331 -11.38239 -11.19155 -11.11213 -10.90410 -10.86792 -10.80005 -10.61955 -10.22927 -10.12002 -9.83974 -9.77391 -9.65255 -9.39121 -9.34190 -8.98747 -8.89188 -8.44193 -7.03347 -5.82970 -3.11562 2.70880 3.01899 3.42342 3.47147 3.50655 3.52089 3.62424 4.34197 4.38521 4.55220 4.56290 4.89090 4.95186 5.11154 5.15103 5.19981 5.20849 5.22408 5.41717 5.49027 5.51578 5.58156 5.59531 5.66514 5.69056 5.76561 5.78854 5.89090 5.91221 5.98041 6.03290 6.05401 6.11068 6.14555 6.25584 6.38869 6.39289 6.47018 6.53981 6.73012 6.75485 6.76388 6.92362 6.95131 7.06509 7.11747 7.23013 7.69015 8.03204 8.35192 8.39783 8.66617 9.48357 10.00144 10.36736 11.38667 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011090 B = 0.004173 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.129633 B = 6708.741279 C = 8214.105358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 H 0.105 0.895 4 C 0.516 3.484 5 O -0.561 6.561 6 N -0.694 5.694 7 C 0.117 3.883 8 C 0.191 3.809 9 N -0.708 5.708 10 C -0.229 4.229 11 H 0.067 0.933 12 C -0.005 4.005 13 N -0.931 5.931 14 Si 0.896 3.104 15 H -0.287 1.287 16 H -0.292 1.292 17 H -0.287 1.287 18 C -0.117 4.117 19 C -0.109 4.109 20 C -0.113 4.113 21 C -0.115 4.115 22 C -0.113 4.113 23 C 0.152 3.848 24 H 0.094 0.906 25 C -0.127 4.127 26 C -0.162 4.162 27 C 0.516 3.484 28 O -0.542 6.542 29 N -0.711 5.711 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.402 0.598 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.384 0.616 37 H 0.254 0.746 38 H 0.044 0.956 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.098 0.902 51 H 0.109 0.891 52 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.293 8.257 6.626 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 H 0.123 0.877 4 C 0.302 3.698 5 O -0.441 6.441 6 N -0.343 5.343 7 C -0.009 4.009 8 C 0.099 3.901 9 N -0.350 5.350 10 C -0.360 4.360 11 H 0.085 0.915 12 C -0.201 4.201 13 N -0.579 5.579 14 Si 0.727 3.273 15 H -0.213 1.213 16 H -0.218 1.218 17 H -0.214 1.214 18 C -0.157 4.157 19 C -0.147 4.147 20 C -0.150 4.150 21 C -0.153 4.153 22 C -0.151 4.151 23 C 0.045 3.955 24 H 0.112 0.888 25 C -0.165 4.165 26 C -0.202 4.202 27 C 0.302 3.698 28 O -0.420 6.420 29 N -0.367 5.367 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.238 0.762 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.219 0.781 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.102 0.898 49 H 0.111 0.889 50 H 0.116 0.884 51 H 0.127 0.873 52 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 11.317 6.966 6.893 14.970 hybrid contribution -0.956 -0.597 -0.379 1.189 sum 10.360 6.369 6.514 13.796 Atomic orbital electron populations 1.21945 0.92147 1.03488 1.03188 1.21791 0.98659 1.00686 0.93448 0.87741 1.20330 0.80127 0.84598 0.84774 1.90612 1.39628 1.26811 1.87057 1.45723 1.51957 1.31514 1.05069 1.21829 0.96338 0.97496 0.85273 1.19819 0.86413 0.92469 0.91405 1.42413 0.98385 1.06675 1.87561 1.18986 0.89678 0.86433 1.40921 0.91539 1.24613 0.96763 0.96162 1.02596 1.69619 1.09474 1.22305 1.56507 0.86442 0.79477 0.83393 0.77953 1.21334 1.21805 1.21389 1.21824 0.98143 1.00110 0.95606 1.21370 1.02606 0.94376 0.96341 1.21474 0.99561 0.96631 0.97365 1.21478 1.02000 0.97321 0.94479 1.21696 0.99450 0.96165 0.97789 1.21366 0.98933 0.81968 0.93214 0.88812 1.22659 0.96838 1.00194 0.96836 1.22527 1.00049 0.94773 1.02898 1.20876 0.79251 0.90183 0.79447 1.90747 1.50110 1.36083 1.65054 1.46282 1.35305 1.12184 1.42906 0.91916 0.91461 0.90763 0.76205 0.93318 0.91650 0.78073 0.93593 0.93708 0.91883 0.90053 0.93739 0.93012 0.93180 0.90852 0.93234 0.92480 0.92294 0.89754 0.88885 0.88401 0.87301 0.74203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 7.71 37.16 0.29 -1.66 16 2 C -0.12 -1.43 2.50 -91.77 -0.23 -1.66 16 3 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.52 8.09 7.02 -10.99 -0.08 8.01 16 5 O -0.56 -10.30 14.81 5.55 0.08 -10.22 16 6 N -0.69 -11.11 5.02 -60.29 -0.30 -11.41 16 7 C 0.12 2.02 4.32 -4.04 -0.02 2.00 16 8 C 0.19 3.21 0.40 -131.82 -0.05 3.16 16 9 N -0.71 -14.68 3.53 -47.23 -0.17 -14.85 16 10 C -0.23 -5.65 8.73 -15.06 -0.13 -5.78 16 11 H 0.07 1.69 6.75 -52.49 -0.35 1.33 16 12 C -0.01 -0.14 5.50 -17.44 -0.10 -0.23 16 13 N -0.93 -25.66 13.07 55.49 0.73 -24.93 16 14 Si 0.90 22.16 29.55 -169.99 -5.02 17.13 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 C -0.12 -1.93 4.56 -26.73 -0.12 -2.05 16 19 C -0.11 -1.75 5.77 -26.73 -0.15 -1.90 16 20 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16 21 C -0.12 -1.62 5.75 -26.71 -0.15 -1.77 16 22 C -0.11 -1.59 4.66 -26.70 -0.12 -1.72 16 23 C 0.15 1.62 2.96 -67.01 -0.20 1.42 16 24 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 25 C -0.13 -0.96 6.21 -25.10 -0.16 -1.12 16 26 C -0.16 -1.62 6.06 -26.74 -0.16 -1.78 16 27 C 0.52 7.70 7.32 -10.86 -0.08 7.62 16 28 O -0.54 -10.62 18.03 5.56 0.10 -10.52 16 29 N -0.71 -9.88 4.89 -52.76 -0.26 -10.14 16 30 H 0.06 1.02 6.90 -51.93 -0.36 0.66 16 31 H 0.07 0.68 5.28 -51.93 -0.27 0.40 16 32 H 0.07 1.07 7.56 -51.93 -0.39 0.68 16 33 H 0.40 6.26 6.71 -40.82 -0.27 5.98 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.34 7.59 -51.93 -0.39 0.94 16 36 H 0.38 8.59 6.53 -40.82 -0.27 8.32 16 37 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 1.16 7.16 -51.93 -0.37 0.79 16 40 H 0.08 1.57 7.60 -51.93 -0.39 1.17 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.20 6.86 -51.93 -0.36 0.84 16 45 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.78 7.14 -51.93 -0.37 0.41 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.09 0.51 7.69 -51.92 -0.40 0.11 16 50 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.11 1.03 6.07 -51.93 -0.32 0.72 16 52 H 0.42 6.52 8.01 -40.82 -0.33 6.20 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -30.93 391.27 -9.20 -40.13 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -8.63 Total: 18.09 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.63 Total: 0.83 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: 0.00 Total: -61.34 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.18 Total: -20.75 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.93 -9.20 -40.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115742270.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.807 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds