Wall clock time and date at job start Tue Mar 31 2020 20:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32984 * 120.00373 * 2 1 4 4 C 1.47103 * 120.00271 * 172.95638 * 3 2 1 5 5 O 1.21617 * 119.99429 * 354.04389 * 4 3 2 6 6 N 1.34770 * 120.00197 * 174.03707 * 4 3 2 7 7 C 1.46508 * 119.99848 * 180.27805 * 6 4 3 8 8 H 1.09000 * 109.47167 * 34.72899 * 7 6 4 9 9 C 1.52992 * 109.46881 * 274.72448 * 7 6 4 10 10 C 1.53003 * 109.46947 * 154.72616 * 7 6 4 11 11 C 1.53005 * 109.46993 * 295.00129 * 10 7 6 12 12 H 1.08997 * 109.47282 * 55.00169 * 11 10 7 13 13 C 1.53007 * 109.46896 * 175.00212 * 11 10 7 14 14 N 1.46902 * 109.46937 * 294.99651 * 11 10 7 15 15 C 1.46902 * 110.99732 * 155.00241 * 14 11 10 16 16 C 1.50700 * 109.47035 * 180.02562 * 15 14 11 17 17 O 1.21294 * 120.00128 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99802 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99896 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00146 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00164 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00118 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00054 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47111 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46868 * 120.00436 * 23 21 19 26 26 H 1.48502 * 109.47100 * 240.00146 * 23 21 19 27 27 C 1.50700 * 119.99334 * 180.02562 * 2 1 3 28 28 C 1.53003 * 117.50395 * 1.64708 * 27 2 1 29 29 C 1.52997 * 117.50198 * 293.02168 * 27 2 1 30 30 H 1.09004 * 109.47308 * 89.99251 * 1 2 3 31 31 H 1.08996 * 109.47808 * 209.99834 * 1 2 3 32 32 H 1.09001 * 109.46733 * 330.00252 * 1 2 3 33 33 H 1.08007 * 120.00288 * 352.96064 * 3 2 1 34 34 H 0.96994 * 120.00349 * 0.02562 * 6 4 3 35 35 H 1.08999 * 109.47560 * 299.99636 * 9 7 6 36 36 H 1.09003 * 109.47206 * 60.00442 * 9 7 6 37 37 H 1.09008 * 109.46686 * 179.97438 * 9 7 6 38 38 H 1.08998 * 109.46980 * 54.99776 * 10 7 6 39 39 H 1.08992 * 109.47000 * 175.00244 * 10 7 6 40 40 H 1.08993 * 109.46972 * 179.97438 * 13 11 10 41 41 H 1.09002 * 109.46981 * 299.99996 * 13 11 10 42 42 H 1.09002 * 109.46961 * 59.99460 * 13 11 10 43 43 H 1.00899 * 110.99801 * 31.05462 * 14 11 10 44 44 H 1.09005 * 109.47204 * 300.00049 * 15 14 11 45 45 H 1.09001 * 109.47166 * 60.00012 * 15 14 11 46 46 H 0.96995 * 120.00330 * 359.97438 * 18 16 15 47 47 H 0.97000 * 120.00657 * 179.97438 * 22 21 19 48 48 H 1.09000 * 115.54744 * 147.35411 * 27 2 1 49 49 H 1.08998 * 117.49439 * 0.02562 * 28 27 2 50 50 H 1.08997 * 117.49986 * 145.01568 * 28 27 2 51 51 H 1.09001 * 117.49935 * 214.98243 * 29 27 2 52 52 H 1.09009 * 117.49682 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1516 0.0000 4 6 3.6347 1.1564 0.1562 5 8 4.2242 0.1195 0.3935 6 7 4.3215 2.3098 0.0363 7 6 5.7789 2.3135 0.1858 8 1 6.1876 1.3860 -0.2152 9 6 6.1391 2.4308 1.6681 10 6 6.3669 3.5019 -0.5776 11 6 6.1141 3.3212 -2.0757 12 1 5.0477 3.1777 -2.2496 13 6 6.5903 4.5661 -2.8271 14 7 6.8516 2.1460 -2.5585 15 6 6.2198 1.5852 -3.7603 16 6 7.0020 0.3838 -4.2248 17 8 7.9884 0.0292 -3.6145 18 7 6.6048 -0.2974 -5.3178 19 6 7.3167 -1.3901 -5.7407 20 1 8.1954 -1.7053 -5.1978 21 6 6.9069 -2.0927 -6.8673 22 7 5.8374 -1.7096 -7.5277 23 14 7.8773 -3.5811 -7.4439 24 1 9.0307 -3.8025 -6.5352 25 1 7.0001 -4.7793 -7.4307 26 1 8.3720 -3.3451 -8.8241 27 6 2.2604 -1.3052 -0.0006 28 6 1.4387 -2.5953 -0.0402 29 6 2.1539 -2.1830 1.2480 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6382 2.0835 -0.1146 34 1 3.8513 3.1368 -0.1527 35 1 5.7304 3.3583 2.0691 36 1 5.7202 1.5841 2.2120 37 1 7.2235 2.4331 1.7794 38 1 5.8927 4.4226 -0.2376 39 1 7.4399 3.5566 -0.3942 40 1 6.4107 4.4372 -3.8943 41 1 6.0432 5.4382 -2.4688 42 1 7.6568 4.7097 -2.6531 43 1 6.9340 1.4483 -1.8343 44 1 5.1981 1.2852 -3.5273 45 1 6.2067 2.3377 -4.5487 46 1 5.8153 -0.0146 -5.8052 47 1 5.5515 -2.1998 -8.3143 48 1 3.2125 -1.2981 -0.5311 49 1 0.3532 -2.4999 -0.0662 50 1 1.8501 -3.4371 -0.5970 51 1 3.0359 -2.7537 1.5387 52 1 1.5392 -1.8162 2.0702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133866956.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:36 Heat of formation + Delta-G solvation = -40.656247 kcal Electronic energy + Delta-G solvation = -29965.582107 eV Core-core repulsion = 25965.887002 eV Total energy + Delta-G solvation = -3999.695105 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.14820 -38.58305 -37.96619 -37.03630 -34.90424 -33.81853 -33.55646 -31.67698 -31.13218 -30.42274 -28.12533 -27.04001 -26.11304 -23.98590 -23.72877 -22.39160 -21.85285 -20.85677 -20.11374 -19.21911 -18.69650 -17.83765 -17.24951 -16.40753 -16.20280 -15.65798 -15.33305 -15.07120 -14.79229 -14.59092 -14.38896 -13.93046 -13.80309 -13.70550 -13.49120 -13.28126 -13.12905 -12.92967 -12.58702 -12.53811 -12.37916 -12.17549 -12.03913 -11.80260 -11.73512 -11.62986 -11.47331 -11.40496 -11.15217 -11.03637 -10.91023 -10.83756 -10.52304 -10.43169 -10.30087 -10.16911 -9.54060 -9.46270 -9.15065 -8.91040 -8.36480 -7.98773 -7.89416 -6.36307 -3.76617 1.21034 3.16752 3.20267 3.26963 3.30263 3.38212 3.92334 3.97925 4.15623 4.38955 4.41496 4.52306 4.63672 4.78655 4.90560 4.95852 5.03678 5.05201 5.14718 5.17368 5.28239 5.30803 5.31439 5.36863 5.44083 5.45257 5.52328 5.57764 5.62912 5.68717 5.77693 5.82716 5.83605 5.88071 5.99525 6.05145 6.07668 6.10562 6.12427 6.16846 6.20513 6.31094 6.41052 6.46251 6.52811 7.33049 7.51511 7.60783 7.75371 8.12703 8.29403 8.67623 9.23937 9.60701 10.12607 10.81734 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007602 B = 0.003514 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3682.150123 B = 7965.965823 C =10488.240164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.002 3.998 3 C -0.233 4.233 4 C 0.544 3.456 5 O -0.529 6.529 6 N -0.724 5.724 7 C 0.135 3.865 8 H 0.092 0.908 9 C -0.159 4.159 10 C -0.128 4.128 11 C 0.082 3.918 12 H 0.042 0.958 13 C -0.140 4.140 14 N -0.663 5.663 15 C 0.053 3.947 16 C 0.443 3.557 17 O -0.582 6.582 18 N -0.565 5.565 19 C -0.296 4.296 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.121 4.121 28 C -0.188 4.188 29 C -0.155 4.155 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.396 0.604 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.349 0.651 44 H 0.040 0.960 45 H 0.084 0.916 46 H 0.391 0.609 47 H 0.270 0.730 48 H 0.136 0.864 49 H 0.094 0.906 50 H 0.097 0.903 51 H 0.097 0.903 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.582 11.021 16.498 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.001 3.999 3 C -0.254 4.254 4 C 0.334 3.666 5 O -0.407 6.407 6 N -0.376 5.376 7 C 0.031 3.969 8 H 0.110 0.890 9 C -0.218 4.218 10 C -0.167 4.167 11 C -0.028 4.028 12 H 0.060 0.940 13 C -0.198 4.198 14 N -0.298 5.298 15 C -0.080 4.080 16 C 0.228 3.772 17 O -0.466 6.466 18 N -0.202 5.202 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.755 3.245 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.138 4.138 28 C -0.225 4.225 29 C -0.192 4.192 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.143 0.857 34 H 0.230 0.770 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.170 0.830 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.224 0.776 47 H 0.080 0.920 48 H 0.153 0.847 49 H 0.113 0.887 50 H 0.116 0.884 51 H 0.115 0.885 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.087 10.317 16.569 22.447 hybrid contribution -1.151 -0.428 -0.526 1.336 sum -12.238 9.888 16.043 22.471 Atomic orbital electron populations 1.21029 0.91226 1.03155 1.03185 1.21836 0.95166 0.93517 0.89428 1.22301 0.93435 0.98560 1.11066 1.18549 0.87828 0.83403 0.76841 1.90792 1.70903 1.31199 1.47839 1.46005 1.07699 1.10281 1.73636 1.21049 0.79844 1.00272 0.95749 0.89033 1.22134 1.01925 1.01936 0.95789 1.22098 1.02777 0.97418 0.94362 1.21531 0.95771 0.92370 0.93148 0.94048 1.21798 1.01900 0.95683 1.00387 1.60228 1.51724 1.09662 1.08157 1.21684 0.95436 0.96751 0.94144 1.19825 0.87640 0.86013 0.83712 1.90520 1.28447 1.70039 1.57552 1.41856 1.27157 1.26643 1.24531 1.19755 1.09539 1.03956 1.09359 0.87915 1.25242 0.96747 0.99526 0.96452 1.69620 1.24149 1.41183 1.19527 0.85817 0.79495 0.80644 0.78503 1.19214 1.20801 1.20770 1.21510 1.00910 0.87815 1.03601 1.23138 0.98877 0.98829 1.01686 1.22781 1.02681 1.02581 0.91146 0.90091 0.90744 0.91054 0.85663 0.76966 0.92716 0.92116 0.91475 0.90854 0.89223 0.92628 0.93048 0.91891 0.82973 0.94244 0.89794 0.77554 0.92014 0.84658 0.88725 0.88408 0.88479 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.49 36.01 0.34 -0.61 16 2 C 0.00 0.02 5.80 -101.17 -0.59 -0.56 16 3 C -0.23 -2.43 9.62 -37.81 -0.36 -2.80 16 4 C 0.54 7.02 7.64 -12.67 -0.10 6.92 16 5 O -0.53 -8.79 12.97 5.26 0.07 -8.72 16 6 N -0.72 -7.45 4.44 -54.99 -0.24 -7.70 16 7 C 0.14 1.51 2.48 -67.93 -0.17 1.34 16 8 H 0.09 1.35 5.72 -51.93 -0.30 1.06 16 9 C -0.16 -1.60 9.49 37.15 0.35 -1.24 16 10 C -0.13 -1.26 4.35 -26.73 -0.12 -1.37 16 11 C 0.08 1.00 2.59 -67.71 -0.18 0.82 16 12 H 0.04 0.50 7.28 -51.93 -0.38 0.12 16 13 C -0.14 -1.57 9.42 37.16 0.35 -1.22 16 14 N -0.66 -11.15 5.93 -107.98 -0.64 -11.79 16 15 C 0.05 0.99 5.97 -4.97 -0.03 0.96 16 16 C 0.44 11.00 7.82 -10.99 -0.09 10.91 16 17 O -0.58 -16.52 15.78 5.55 0.09 -16.43 16 18 N -0.57 -14.92 5.29 -10.96 -0.06 -14.98 16 19 C -0.30 -8.55 9.68 -14.93 -0.14 -8.70 16 20 H 0.10 3.12 7.16 -52.49 -0.38 2.74 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -25.17 13.05 55.50 0.72 -24.45 16 23 Si 0.93 21.64 29.55 -169.99 -5.02 16.61 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C -0.12 -1.53 4.35 -91.77 -0.40 -1.93 16 28 C -0.19 -2.01 9.79 -26.73 -0.26 -2.27 16 29 C -0.15 -1.74 10.23 -26.73 -0.27 -2.01 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.50 6.37 -51.93 -0.33 0.17 16 32 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 33 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.40 2.98 8.59 -40.82 -0.35 2.63 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.68 7.45 -51.93 -0.39 0.29 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.35 6.34 6.11 -39.29 -0.24 6.10 16 44 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 45 H 0.08 1.46 7.44 -51.93 -0.39 1.08 16 46 H 0.39 9.90 7.90 -40.82 -0.32 9.58 16 47 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.14 2.20 6.24 -51.93 -0.32 1.87 16 49 H 0.09 0.83 6.31 -51.93 -0.33 0.50 16 50 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 52 H 0.09 0.88 8.14 -51.92 -0.42 0.45 16 LS Contribution 421.16 15.07 6.35 6.35 Total: -1.00 -33.92 421.16 -9.26 -43.18 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -8.76 Total: 19.20 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.75 Total: -1.26 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.22 Total: -58.92 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: 0.16 Total: -25.16 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.92 -9.26 -43.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133866956.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.519 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds