Wall clock time and date at job start Tue Mar 31 2020 20:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32984 * 120.00373 * 2 1 4 4 C 1.47103 * 120.00271 * 172.95638 * 3 2 1 5 5 O 1.21617 * 119.99429 * 354.04389 * 4 3 2 6 6 N 1.34770 * 120.00197 * 174.03707 * 4 3 2 7 7 C 1.46508 * 119.99848 * 180.27805 * 6 4 3 8 8 H 1.09000 * 109.47167 * 34.72899 * 7 6 4 9 9 C 1.52992 * 109.46881 * 274.72448 * 7 6 4 10 10 C 1.53003 * 109.46947 * 154.72616 * 7 6 4 11 11 C 1.53005 * 109.46993 * 295.00129 * 10 7 6 12 12 H 1.08997 * 109.47282 * 55.00169 * 11 10 7 13 13 C 1.53007 * 109.46896 * 175.00212 * 11 10 7 14 14 N 1.46902 * 109.46937 * 294.99651 * 11 10 7 15 15 C 1.46902 * 110.99732 * 155.00241 * 14 11 10 16 16 C 1.50700 * 109.47035 * 180.02562 * 15 14 11 17 17 O 1.21294 * 120.00128 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99802 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99896 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00146 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00164 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00118 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00054 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47111 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46868 * 120.00436 * 23 21 19 26 26 H 1.48502 * 109.47100 * 240.00146 * 23 21 19 27 27 C 1.50700 * 119.99334 * 180.02562 * 2 1 3 28 28 C 1.53003 * 117.50395 * 1.64708 * 27 2 1 29 29 C 1.52997 * 117.50198 * 293.02168 * 27 2 1 30 30 H 1.09004 * 109.47308 * 89.99251 * 1 2 3 31 31 H 1.08996 * 109.47808 * 209.99834 * 1 2 3 32 32 H 1.09001 * 109.46733 * 330.00252 * 1 2 3 33 33 H 1.08007 * 120.00288 * 352.96064 * 3 2 1 34 34 H 0.96994 * 120.00349 * 0.02562 * 6 4 3 35 35 H 1.08999 * 109.47560 * 299.99636 * 9 7 6 36 36 H 1.09003 * 109.47206 * 60.00442 * 9 7 6 37 37 H 1.09008 * 109.46686 * 179.97438 * 9 7 6 38 38 H 1.08998 * 109.46980 * 54.99776 * 10 7 6 39 39 H 1.08992 * 109.47000 * 175.00244 * 10 7 6 40 40 H 1.08993 * 109.46972 * 179.97438 * 13 11 10 41 41 H 1.09002 * 109.46981 * 299.99996 * 13 11 10 42 42 H 1.09002 * 109.46961 * 59.99460 * 13 11 10 43 43 H 1.00899 * 110.99801 * 31.05462 * 14 11 10 44 44 H 1.09005 * 109.47204 * 300.00049 * 15 14 11 45 45 H 1.09001 * 109.47166 * 60.00012 * 15 14 11 46 46 H 0.96995 * 120.00330 * 359.97438 * 18 16 15 47 47 H 0.97000 * 120.00657 * 179.97438 * 22 21 19 48 48 H 1.09000 * 115.54744 * 147.35411 * 27 2 1 49 49 H 1.08998 * 117.49439 * 0.02562 * 28 27 2 50 50 H 1.08997 * 117.49986 * 145.01568 * 28 27 2 51 51 H 1.09001 * 117.49935 * 214.98243 * 29 27 2 52 52 H 1.09009 * 117.49682 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1516 0.0000 4 6 3.6347 1.1564 0.1562 5 8 4.2242 0.1195 0.3935 6 7 4.3215 2.3098 0.0363 7 6 5.7789 2.3135 0.1858 8 1 6.1876 1.3860 -0.2152 9 6 6.1391 2.4308 1.6681 10 6 6.3669 3.5019 -0.5776 11 6 6.1141 3.3212 -2.0757 12 1 5.0477 3.1777 -2.2496 13 6 6.5903 4.5661 -2.8271 14 7 6.8516 2.1460 -2.5585 15 6 6.2198 1.5852 -3.7603 16 6 7.0020 0.3838 -4.2248 17 8 7.9884 0.0292 -3.6145 18 7 6.6048 -0.2974 -5.3178 19 6 7.3167 -1.3901 -5.7407 20 1 8.1954 -1.7053 -5.1978 21 6 6.9069 -2.0927 -6.8673 22 7 5.8374 -1.7096 -7.5277 23 14 7.8773 -3.5811 -7.4439 24 1 9.0307 -3.8025 -6.5352 25 1 7.0001 -4.7793 -7.4307 26 1 8.3720 -3.3451 -8.8241 27 6 2.2604 -1.3052 -0.0006 28 6 1.4387 -2.5953 -0.0402 29 6 2.1539 -2.1830 1.2480 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6382 2.0835 -0.1146 34 1 3.8513 3.1368 -0.1527 35 1 5.7304 3.3583 2.0691 36 1 5.7202 1.5841 2.2120 37 1 7.2235 2.4331 1.7794 38 1 5.8927 4.4226 -0.2376 39 1 7.4399 3.5566 -0.3942 40 1 6.4107 4.4372 -3.8943 41 1 6.0432 5.4382 -2.4688 42 1 7.6568 4.7097 -2.6531 43 1 6.9340 1.4483 -1.8343 44 1 5.1981 1.2852 -3.5273 45 1 6.2067 2.3377 -4.5487 46 1 5.8153 -0.0146 -5.8052 47 1 5.5515 -2.1998 -8.3143 48 1 3.2125 -1.2981 -0.5311 49 1 0.3532 -2.4999 -0.0662 50 1 1.8501 -3.4371 -0.5970 51 1 3.0359 -2.7537 1.5387 52 1 1.5392 -1.8162 2.0702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133866956.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:35 Heat of formation + Delta-G solvation = -64.719068 kcal Electronic energy + Delta-G solvation = -29966.625550 eV Core-core repulsion = 25965.887002 eV Total energy + Delta-G solvation = -4000.738547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.11379 -40.25174 -39.12655 -38.17764 -36.20284 -35.77083 -34.37684 -33.35228 -32.67732 -31.50131 -28.79505 -28.22359 -27.58968 -25.72526 -24.68580 -23.28870 -22.75778 -21.81977 -21.16932 -21.10789 -19.96690 -19.56363 -18.17728 -17.89104 -17.29141 -17.00937 -16.58232 -16.53855 -16.17797 -15.72496 -15.67720 -15.51643 -15.38914 -14.65074 -14.47602 -14.27235 -14.06307 -13.96143 -13.85596 -13.59939 -13.48962 -13.32205 -13.21055 -13.09111 -12.92043 -12.84095 -12.70346 -12.53599 -12.44483 -12.25557 -12.15350 -12.10363 -11.90357 -11.71687 -11.55186 -11.48548 -11.33027 -10.53507 -10.38953 -10.09831 -10.05307 -9.72731 -9.33134 -8.50083 -5.99186 0.37908 1.33531 1.38368 1.53278 2.00006 2.26463 2.29327 2.36019 2.91728 3.02269 3.16331 3.47293 3.58929 3.66166 3.86119 3.89797 4.00172 4.13088 4.14463 4.23018 4.24718 4.38153 4.40287 4.43020 4.49555 4.52825 4.63152 4.64082 4.70977 4.75817 4.79318 4.83916 4.92214 4.95040 5.00517 5.04305 5.11265 5.19648 5.21070 5.23431 5.27052 5.37347 5.42326 5.47639 5.61782 5.66026 5.89110 6.12168 6.37559 6.56018 6.69477 7.08679 7.39923 7.50891 8.06734 8.67782 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007602 B = 0.003514 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3682.150123 B = 7965.965823 C =10488.240164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.002 4.002 3 C -0.238 4.238 4 C 0.531 3.469 5 O -0.579 6.579 6 N -0.709 5.709 7 C 0.137 3.863 8 H 0.047 0.953 9 C -0.152 4.152 10 C -0.116 4.116 11 C 0.080 3.920 12 H 0.049 0.951 13 C -0.136 4.136 14 N -0.676 5.676 15 C 0.070 3.930 16 C 0.435 3.565 17 O -0.623 6.623 18 N -0.572 5.572 19 C -0.336 4.336 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.275 1.275 25 H -0.269 1.269 26 H -0.267 1.267 27 C -0.143 4.143 28 C -0.175 4.175 29 C -0.155 4.155 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.163 0.837 34 H 0.414 0.586 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.337 0.663 44 H 0.050 0.950 45 H 0.104 0.896 46 H 0.396 0.604 47 H 0.279 0.721 48 H 0.089 0.911 49 H 0.123 0.877 50 H 0.088 0.912 51 H 0.080 0.920 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.926 13.132 16.661 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.004 4.004 3 C -0.259 4.259 4 C 0.322 3.678 5 O -0.460 6.460 6 N -0.362 5.362 7 C 0.032 3.968 8 H 0.065 0.935 9 C -0.210 4.210 10 C -0.154 4.154 11 C -0.029 4.029 12 H 0.067 0.933 13 C -0.194 4.194 14 N -0.310 5.310 15 C -0.062 4.062 16 C 0.223 3.777 17 O -0.510 6.510 18 N -0.209 5.209 19 C -0.465 4.465 20 H 0.094 0.906 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.816 3.184 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.192 1.192 27 C -0.161 4.161 28 C -0.211 4.211 29 C -0.192 4.192 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.180 0.820 34 H 0.251 0.749 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.072 0.928 43 H 0.157 0.843 44 H 0.068 0.932 45 H 0.122 0.878 46 H 0.229 0.771 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.141 0.859 50 H 0.106 0.894 51 H 0.099 0.901 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.468 12.498 16.712 24.837 hybrid contribution -0.383 -1.082 -0.566 1.280 sum -13.851 11.416 16.146 24.143 Atomic orbital electron populations 1.21082 0.88245 1.04654 1.04069 1.22115 0.97062 0.92247 0.88957 1.22530 0.91893 1.00184 1.11289 1.19155 0.89158 0.83227 0.76245 1.90788 1.72061 1.33043 1.50146 1.45869 1.07311 1.10452 1.72549 1.20932 0.80301 0.99024 0.96542 0.93479 1.22058 1.02215 1.02150 0.94599 1.22040 1.02917 0.98113 0.92303 1.21718 0.95676 0.90705 0.94818 0.93268 1.21792 1.01855 0.96178 0.99570 1.60297 1.52946 1.10449 1.07338 1.21502 0.94671 0.94455 0.95620 1.20906 0.87335 0.86931 0.82558 1.90482 1.30493 1.71471 1.58544 1.41916 1.27207 1.26554 1.25203 1.19700 1.10057 1.06052 1.10734 0.90577 1.26047 0.97534 1.01781 0.95736 1.69674 1.24635 1.42032 1.19672 0.84876 0.77970 0.77291 0.78219 1.19973 1.19463 1.19159 1.21364 1.00077 0.90279 1.04357 1.23211 1.00110 0.97221 1.00576 1.22799 1.02548 1.02151 0.91678 0.89285 0.89984 0.88847 0.81951 0.74891 0.90066 0.94539 0.91083 0.86958 0.89505 0.93827 0.89600 0.92765 0.84285 0.93239 0.87792 0.77074 0.91196 0.89293 0.85942 0.89375 0.90104 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.49 71.24 0.68 -0.78 16 2 C 0.00 -0.04 5.80 -17.62 -0.10 -0.14 16 3 C -0.24 -4.67 9.62 23.43 0.23 -4.45 16 4 C 0.53 13.95 7.64 86.57 0.66 14.61 16 5 O -0.58 -20.85 12.97 -4.08 -0.05 -20.90 16 6 N -0.71 -13.91 4.44 -446.13 -1.98 -15.89 16 7 C 0.14 3.04 2.48 44.99 0.11 3.15 16 8 H 0.05 1.50 5.72 -2.39 -0.01 1.49 16 9 C -0.15 -2.97 9.49 71.98 0.68 -2.29 16 10 C -0.12 -2.03 4.35 30.60 0.13 -1.90 16 11 C 0.08 1.81 2.59 44.92 0.12 1.93 16 12 H 0.05 1.07 7.28 -2.39 -0.02 1.05 16 13 C -0.14 -2.71 9.42 71.98 0.68 -2.03 16 14 N -0.68 -23.06 5.93 -495.54 -2.94 -26.00 16 15 C 0.07 2.68 5.97 85.56 0.51 3.19 16 16 C 0.44 22.54 7.82 87.66 0.69 23.23 16 17 O -0.62 -37.33 15.78 -3.07 -0.05 -37.38 16 18 N -0.57 -31.34 5.29 -306.99 -1.62 -32.96 16 19 C -0.34 -20.13 9.68 84.04 0.81 -19.31 16 20 H 0.08 4.89 7.16 -2.91 -0.02 4.86 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 22 N -0.92 -51.17 13.05 21.66 0.28 -50.89 16 23 Si 0.99 44.61 29.55 68.60 2.03 46.64 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 27 C -0.14 -3.81 4.35 -11.54 -0.05 -3.86 16 28 C -0.17 -3.72 9.79 30.60 0.30 -3.42 16 29 C -0.15 -3.60 10.23 30.59 0.31 -3.28 16 30 H 0.09 0.94 8.14 -2.38 -0.02 0.93 16 31 H 0.08 0.84 6.37 -2.39 -0.02 0.83 16 32 H 0.09 0.71 8.07 -2.39 -0.02 0.69 16 33 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 34 H 0.41 5.05 8.59 -92.71 -0.80 4.25 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.04 0.97 7.45 -2.39 -0.02 0.95 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.34 12.94 6.11 -89.70 -0.55 12.40 16 44 H 0.05 1.79 8.06 -2.38 -0.02 1.77 16 45 H 0.10 3.56 7.44 -2.39 -0.02 3.54 16 46 H 0.40 20.56 7.90 -92.71 -0.73 19.83 16 47 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 48 H 0.09 3.23 6.24 -2.39 -0.01 3.22 16 49 H 0.12 1.90 6.31 -2.39 -0.02 1.88 16 50 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 51 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 52 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -79.42 421.16 0.75 -78.67 By element: Atomic # 1 Polarization: 55.36 SS G_CDS: -1.13 Total: 54.23 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 6.22 Total: 4.50 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -6.26 Total: -125.75 kcal Atomic # 8 Polarization: -58.18 SS G_CDS: -0.10 Total: -58.28 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -79.42 0.75 -78.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133866956.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.954 kcal (2) G-P(sol) polarization free energy of solvation -79.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds