Wall clock time and date at job start Tue Mar 31 2020 20:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32995 * 119.99906 * 2 1 4 4 C 1.47101 * 119.99967 * 7.46344 * 3 2 1 5 5 O 1.21613 * 120.00265 * 6.01739 * 4 3 2 6 6 N 1.34780 * 120.00017 * 186.01269 * 4 3 2 7 7 C 1.46499 * 120.00018 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.46829 * 35.00075 * 7 6 4 9 9 C 1.52999 * 109.47075 * 275.00359 * 7 6 4 10 10 C 1.52999 * 109.46918 * 155.00178 * 7 6 4 11 11 C 1.52999 * 109.47275 * 295.00215 * 10 7 6 12 12 H 1.08999 * 109.47278 * 54.99857 * 11 10 7 13 13 C 1.52996 * 109.47078 * 175.00331 * 11 10 7 14 14 N 1.46904 * 109.46858 * 295.00150 * 11 10 7 15 15 C 1.46899 * 111.00296 * 155.00188 * 14 11 10 16 16 C 1.50690 * 109.47430 * 180.02562 * 15 14 11 17 17 O 1.21296 * 119.99977 * 359.97438 * 16 15 14 18 18 N 1.34783 * 120.00008 * 179.97438 * 16 15 14 19 19 C 1.37093 * 119.99701 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00896 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99881 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99681 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00234 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46711 * 60.00520 * 23 21 19 25 25 H 1.48502 * 109.47180 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47055 * 300.00266 * 23 21 19 27 27 C 1.50696 * 119.99918 * 180.28310 * 2 1 3 28 28 C 1.53006 * 117.50214 * 8.46607 * 27 2 1 29 29 C 1.53004 * 117.49682 * 299.80845 * 27 2 1 30 30 H 1.08996 * 109.46834 * 275.15337 * 1 2 3 31 31 H 1.08999 * 109.47240 * 35.15217 * 1 2 3 32 32 H 1.09002 * 109.47140 * 155.15248 * 1 2 3 33 33 H 1.08002 * 120.00102 * 187.45915 * 3 2 1 34 34 H 0.96996 * 119.99784 * 0.02562 * 6 4 3 35 35 H 1.08998 * 109.47668 * 59.99706 * 9 7 6 36 36 H 1.09001 * 109.47241 * 180.02562 * 9 7 6 37 37 H 1.09005 * 109.47287 * 300.00148 * 9 7 6 38 38 H 1.08997 * 109.46990 * 55.00331 * 10 7 6 39 39 H 1.09001 * 109.46823 * 175.00205 * 10 7 6 40 40 H 1.09000 * 109.47111 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.47178 * 299.99608 * 13 11 10 42 42 H 1.08999 * 109.47454 * 59.99633 * 13 11 10 43 43 H 1.00896 * 111.00234 * 31.04115 * 14 11 10 44 44 H 1.09002 * 109.46688 * 300.00357 * 15 14 11 45 45 H 1.09003 * 109.47110 * 59.99188 * 15 14 11 46 46 H 0.96993 * 119.99689 * 359.97438 * 18 16 15 47 47 H 0.97002 * 119.99639 * 179.97438 * 22 21 19 48 48 H 1.08998 * 115.55526 * 154.14252 * 27 2 1 49 49 H 1.08997 * 117.49375 * 0.02562 * 28 27 2 50 50 H 1.08994 * 117.49769 * 145.01959 * 28 27 2 51 51 H 1.09000 * 117.49612 * 214.98295 * 29 27 2 52 52 H 1.08997 * 117.49880 * 359.97343 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4458 2.4203 0.1655 5 8 0.2548 2.4116 0.4114 6 7 2.1004 3.5923 0.0447 7 6 1.3771 4.8556 0.2089 8 1 0.6046 4.7358 0.9685 9 6 0.7288 5.2486 -1.1201 10 6 2.3542 5.9499 0.6431 11 6 2.9086 5.6177 2.0299 12 1 3.3504 4.6213 2.0154 13 6 3.9773 6.6440 2.4111 14 7 1.8194 5.6561 3.0148 15 6 2.1285 4.8096 4.1749 16 6 0.9907 4.8737 5.1609 17 8 0.0181 5.5576 4.9211 18 7 1.0538 4.1709 6.3093 19 6 0.0190 4.2297 7.2066 20 1 -0.8471 4.8387 6.9931 21 6 0.0837 3.5048 8.3903 22 7 1.1373 2.7634 8.6499 23 14 -1.3260 3.5854 9.6132 24 1 -2.5718 3.1028 8.9649 25 1 -1.0139 2.7290 10.7856 26 1 -1.5128 4.9887 10.0616 27 6 2.2605 -1.3051 -0.0064 28 6 1.4512 -2.5871 -0.2126 29 6 2.0294 -2.2600 1.1665 30 1 -0.3633 0.0923 1.0235 31 1 -0.3634 0.8402 -0.5917 32 1 -0.3633 -0.9325 -0.4318 33 1 3.2452 1.1558 -0.1214 34 1 3.0502 3.5992 -0.1518 35 1 0.0328 4.4690 -1.4295 36 1 0.1910 6.1888 -0.9980 37 1 1.5013 5.3683 -1.8798 38 1 3.1748 6.0088 -0.0718 39 1 1.8345 6.9074 0.6794 40 1 4.3727 6.4071 3.3989 41 1 4.7856 6.6155 1.6804 42 1 3.5355 7.6404 2.4256 43 1 0.9423 5.3874 2.5946 44 1 2.2666 3.7795 3.8465 45 1 3.0426 5.1648 4.6507 46 1 1.8314 3.6237 6.5009 47 1 1.1827 2.2577 9.4764 48 1 3.2620 -1.2677 -0.4351 49 1 0.3739 -2.4865 -0.3440 50 1 1.9204 -3.3932 -0.7767 51 1 2.8788 -2.8510 1.5091 52 1 1.3328 -1.9440 1.9430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133866958.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:40 Heat of formation + Delta-G solvation = -40.807013 kcal Electronic energy + Delta-G solvation = -29687.104597 eV Core-core repulsion = 25687.402954 eV Total energy + Delta-G solvation = -3999.701643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.16348 -38.60968 -38.12858 -37.22637 -35.01269 -33.81755 -33.28850 -31.73836 -31.13457 -30.42168 -27.76458 -27.03800 -26.10871 -24.50773 -23.85595 -22.67305 -21.77977 -20.74415 -20.11998 -19.20309 -18.66260 -17.83322 -17.16738 -16.56347 -16.22514 -15.80445 -15.35747 -15.06546 -14.93426 -14.80070 -14.39670 -13.87075 -13.82086 -13.73844 -13.54272 -13.30464 -13.18720 -12.79974 -12.57554 -12.38584 -12.20075 -12.09886 -12.04046 -11.81355 -11.79625 -11.70010 -11.46820 -11.42959 -11.16790 -11.11882 -11.00572 -10.87844 -10.73500 -10.52279 -10.39652 -10.15356 -9.56982 -9.43835 -9.26603 -8.92677 -8.36122 -7.98487 -7.88989 -6.35706 -3.76085 1.19606 3.13726 3.20989 3.24699 3.29325 3.34443 3.63033 3.98457 4.15861 4.28844 4.40460 4.54344 4.55069 4.60602 4.71839 4.77979 4.89557 5.04132 5.07759 5.17589 5.29000 5.30959 5.31626 5.43545 5.44732 5.50659 5.55151 5.57354 5.67684 5.73582 5.77003 5.77665 5.82795 5.83506 5.88263 5.94546 6.00423 6.05434 6.09985 6.13273 6.31324 6.34409 6.38871 6.41602 6.50804 7.33267 7.49239 7.60820 7.75660 8.12668 8.25940 8.68216 9.24166 9.61068 10.13168 10.82181 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007221 B = 0.003325 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3876.539008 B = 8419.606065 C =11137.644294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.004 3.996 3 C -0.232 4.232 4 C 0.545 3.455 5 O -0.533 6.533 6 N -0.724 5.724 7 C 0.135 3.865 8 H 0.092 0.908 9 C -0.159 4.159 10 C -0.128 4.128 11 C 0.082 3.918 12 H 0.042 0.958 13 C -0.140 4.140 14 N -0.663 5.663 15 C 0.053 3.947 16 C 0.443 3.557 17 O -0.582 6.582 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C -0.135 4.135 28 C -0.176 4.176 29 C -0.161 4.161 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.124 0.876 34 H 0.397 0.603 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.349 0.651 44 H 0.040 0.960 45 H 0.084 0.916 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.114 0.886 49 H 0.103 0.897 50 H 0.098 0.902 51 H 0.101 0.899 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.771 -5.689 -21.686 24.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.002 3.998 3 C -0.253 4.253 4 C 0.335 3.665 5 O -0.412 6.412 6 N -0.375 5.375 7 C 0.030 3.970 8 H 0.110 0.890 9 C -0.218 4.218 10 C -0.167 4.167 11 C -0.028 4.028 12 H 0.060 0.940 13 C -0.198 4.198 14 N -0.298 5.298 15 C -0.080 4.080 16 C 0.228 3.772 17 O -0.466 6.466 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.153 4.153 28 C -0.213 4.213 29 C -0.198 4.198 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.142 0.858 34 H 0.231 0.769 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.170 0.830 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.132 0.868 49 H 0.121 0.879 50 H 0.116 0.884 51 H 0.119 0.881 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.504 -4.754 -21.192 22.979 hybrid contribution 0.469 -1.239 0.390 1.381 sum 7.973 -5.994 -20.802 23.070 Atomic orbital electron populations 1.21233 0.90705 1.02540 1.04000 1.21793 0.96246 0.92358 0.89374 1.22223 1.00044 0.91929 1.11112 1.18506 0.87028 0.84173 0.76827 1.90802 1.15110 1.87493 1.47787 1.45984 1.12655 1.05544 1.73330 1.21060 0.94950 0.82749 0.98212 0.88993 1.22137 1.00812 1.02034 0.96806 1.22098 0.99147 0.99123 0.96291 1.21530 0.92801 0.97875 0.90624 0.94049 1.21797 0.97141 0.99820 1.01011 1.60224 1.04798 1.57020 1.07762 1.21681 0.98800 0.94932 0.92609 1.19819 0.88926 0.84533 0.83916 1.90518 1.34534 1.44069 1.77482 1.41841 1.19989 1.41789 1.16515 1.19659 0.98915 1.26616 0.97568 0.88016 1.25245 0.98126 0.96305 0.98260 1.69612 1.28743 1.29779 1.26367 0.85929 0.80799 0.78288 0.79271 1.19920 1.20999 1.19904 1.21267 0.99984 0.88790 1.05300 1.23133 1.00471 0.97706 0.99955 1.23018 1.03745 1.01290 0.91749 0.89991 0.89035 0.92390 0.85846 0.76899 0.92142 0.91421 0.92687 0.90834 0.89195 0.92623 0.93047 0.91878 0.82964 0.94229 0.89784 0.77544 0.91914 0.86785 0.87861 0.88388 0.88097 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.21 36.01 0.30 -1.20 16 2 C 0.00 0.04 5.81 -101.17 -0.59 -0.54 16 3 C -0.23 -2.47 9.67 -37.81 -0.37 -2.84 16 4 C 0.54 7.06 7.58 -12.66 -0.10 6.96 16 5 O -0.53 -8.88 12.95 5.27 0.07 -8.81 16 6 N -0.72 -7.49 4.44 -54.99 -0.24 -7.73 16 7 C 0.13 1.51 2.48 -67.93 -0.17 1.34 16 8 H 0.09 1.36 5.72 -51.93 -0.30 1.07 16 9 C -0.16 -1.58 9.48 37.16 0.35 -1.23 16 10 C -0.13 -1.26 4.34 -26.73 -0.12 -1.38 16 11 C 0.08 1.00 2.59 -67.71 -0.18 0.83 16 12 H 0.04 0.50 7.28 -51.93 -0.38 0.12 16 13 C -0.14 -1.58 9.41 37.16 0.35 -1.23 16 14 N -0.66 -11.24 5.93 -108.00 -0.64 -11.88 16 15 C 0.05 1.00 5.96 -4.98 -0.03 0.97 16 16 C 0.44 11.06 7.82 -10.99 -0.09 10.97 16 17 O -0.58 -16.60 15.78 5.54 0.09 -16.52 16 18 N -0.56 -14.99 5.29 -10.96 -0.06 -15.04 16 19 C -0.30 -8.63 9.68 -14.93 -0.14 -8.77 16 20 H 0.10 3.08 7.16 -52.48 -0.38 2.71 16 21 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 22 N -0.90 -25.23 13.05 55.50 0.72 -24.50 16 23 Si 0.93 21.69 29.55 -169.99 -5.02 16.67 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 C -0.14 -1.14 6.01 -91.77 -0.55 -1.69 16 28 C -0.18 -1.29 9.87 -26.69 -0.26 -1.56 16 29 C -0.16 -1.33 10.21 -26.69 -0.27 -1.61 16 30 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 31 H 0.09 1.20 6.13 -51.93 -0.32 0.89 16 32 H 0.06 0.54 5.78 -51.93 -0.30 0.24 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.40 3.01 8.59 -40.82 -0.35 2.66 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.68 7.45 -51.93 -0.39 0.29 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.35 6.39 6.11 -39.29 -0.24 6.15 16 44 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 45 H 0.08 1.47 7.44 -51.93 -0.39 1.09 16 46 H 0.39 9.94 7.90 -40.82 -0.32 9.62 16 47 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 48 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.10 0.76 6.02 -51.93 -0.31 0.45 16 50 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 51 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 52 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 420.55 15.07 6.34 6.34 Total: -1.00 -33.96 420.55 -9.42 -43.38 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -8.71 Total: 18.57 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.95 Total: -0.46 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.22 Total: -59.17 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: 0.16 Total: -25.33 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.96 -9.42 -43.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133866958.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.568 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds