Wall clock time and date at job start Tue Mar 31 2020 20:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32995 * 119.99906 * 2 1 4 4 C 1.47101 * 119.99967 * 7.46344 * 3 2 1 5 5 O 1.21613 * 120.00265 * 6.01739 * 4 3 2 6 6 N 1.34780 * 120.00017 * 186.01269 * 4 3 2 7 7 C 1.46499 * 120.00018 * 179.97438 * 6 4 3 8 8 H 1.08996 * 109.46829 * 35.00075 * 7 6 4 9 9 C 1.52999 * 109.47075 * 275.00359 * 7 6 4 10 10 C 1.52999 * 109.46918 * 155.00178 * 7 6 4 11 11 C 1.52999 * 109.47275 * 295.00215 * 10 7 6 12 12 H 1.08999 * 109.47278 * 54.99857 * 11 10 7 13 13 C 1.52996 * 109.47078 * 175.00331 * 11 10 7 14 14 N 1.46904 * 109.46858 * 295.00150 * 11 10 7 15 15 C 1.46899 * 111.00296 * 155.00188 * 14 11 10 16 16 C 1.50690 * 109.47430 * 180.02562 * 15 14 11 17 17 O 1.21296 * 119.99977 * 359.97438 * 16 15 14 18 18 N 1.34783 * 120.00008 * 179.97438 * 16 15 14 19 19 C 1.37093 * 119.99701 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00896 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99881 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99681 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00234 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46711 * 60.00520 * 23 21 19 25 25 H 1.48502 * 109.47180 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47055 * 300.00266 * 23 21 19 27 27 C 1.50696 * 119.99918 * 180.28310 * 2 1 3 28 28 C 1.53006 * 117.50214 * 8.46607 * 27 2 1 29 29 C 1.53004 * 117.49682 * 299.80845 * 27 2 1 30 30 H 1.08996 * 109.46834 * 275.15337 * 1 2 3 31 31 H 1.08999 * 109.47240 * 35.15217 * 1 2 3 32 32 H 1.09002 * 109.47140 * 155.15248 * 1 2 3 33 33 H 1.08002 * 120.00102 * 187.45915 * 3 2 1 34 34 H 0.96996 * 119.99784 * 0.02562 * 6 4 3 35 35 H 1.08998 * 109.47668 * 59.99706 * 9 7 6 36 36 H 1.09001 * 109.47241 * 180.02562 * 9 7 6 37 37 H 1.09005 * 109.47287 * 300.00148 * 9 7 6 38 38 H 1.08997 * 109.46990 * 55.00331 * 10 7 6 39 39 H 1.09001 * 109.46823 * 175.00205 * 10 7 6 40 40 H 1.09000 * 109.47111 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.47178 * 299.99608 * 13 11 10 42 42 H 1.08999 * 109.47454 * 59.99633 * 13 11 10 43 43 H 1.00896 * 111.00234 * 31.04115 * 14 11 10 44 44 H 1.09002 * 109.46688 * 300.00357 * 15 14 11 45 45 H 1.09003 * 109.47110 * 59.99188 * 15 14 11 46 46 H 0.96993 * 119.99689 * 359.97438 * 18 16 15 47 47 H 0.97002 * 119.99639 * 179.97438 * 22 21 19 48 48 H 1.08998 * 115.55526 * 154.14252 * 27 2 1 49 49 H 1.08997 * 117.49375 * 0.02562 * 28 27 2 50 50 H 1.08994 * 117.49769 * 145.01959 * 28 27 2 51 51 H 1.09000 * 117.49612 * 214.98295 * 29 27 2 52 52 H 1.08997 * 117.49880 * 359.97343 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4458 2.4203 0.1655 5 8 0.2548 2.4116 0.4114 6 7 2.1004 3.5923 0.0447 7 6 1.3771 4.8556 0.2089 8 1 0.6046 4.7358 0.9685 9 6 0.7288 5.2486 -1.1201 10 6 2.3542 5.9499 0.6431 11 6 2.9086 5.6177 2.0299 12 1 3.3504 4.6213 2.0154 13 6 3.9773 6.6440 2.4111 14 7 1.8194 5.6561 3.0148 15 6 2.1285 4.8096 4.1749 16 6 0.9907 4.8737 5.1609 17 8 0.0181 5.5576 4.9211 18 7 1.0538 4.1709 6.3093 19 6 0.0190 4.2297 7.2066 20 1 -0.8471 4.8387 6.9931 21 6 0.0837 3.5048 8.3903 22 7 1.1373 2.7634 8.6499 23 14 -1.3260 3.5854 9.6132 24 1 -2.5718 3.1028 8.9649 25 1 -1.0139 2.7290 10.7856 26 1 -1.5128 4.9887 10.0616 27 6 2.2605 -1.3051 -0.0064 28 6 1.4512 -2.5871 -0.2126 29 6 2.0294 -2.2600 1.1665 30 1 -0.3633 0.0923 1.0235 31 1 -0.3634 0.8402 -0.5917 32 1 -0.3633 -0.9325 -0.4318 33 1 3.2452 1.1558 -0.1214 34 1 3.0502 3.5992 -0.1518 35 1 0.0328 4.4690 -1.4295 36 1 0.1910 6.1888 -0.9980 37 1 1.5013 5.3683 -1.8798 38 1 3.1748 6.0088 -0.0718 39 1 1.8345 6.9074 0.6794 40 1 4.3727 6.4071 3.3989 41 1 4.7856 6.6155 1.6804 42 1 3.5355 7.6404 2.4256 43 1 0.9423 5.3874 2.5946 44 1 2.2666 3.7795 3.8465 45 1 3.0426 5.1648 4.6507 46 1 1.8314 3.6237 6.5009 47 1 1.1827 2.2577 9.4764 48 1 3.2620 -1.2677 -0.4351 49 1 0.3739 -2.4865 -0.3440 50 1 1.9204 -3.3932 -0.7767 51 1 2.8788 -2.8510 1.5091 52 1 1.3328 -1.9440 1.9430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133866958.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:39 Heat of formation + Delta-G solvation = -64.619225 kcal Electronic energy + Delta-G solvation = -29688.137172 eV Core-core repulsion = 25687.402954 eV Total energy + Delta-G solvation = -4000.734218 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.14180 -40.24496 -39.13427 -38.36148 -36.26293 -35.81150 -34.14072 -33.35312 -32.74556 -31.51528 -28.66508 -28.21943 -27.58247 -25.73437 -25.26042 -23.27764 -22.64126 -21.68804 -21.15440 -21.11398 -19.95762 -19.46233 -18.11873 -17.90080 -17.31196 -17.01959 -16.68672 -16.49824 -16.12164 -15.98639 -15.65981 -15.56381 -15.40324 -14.70669 -14.56480 -14.39131 -14.23862 -14.07355 -13.71611 -13.59081 -13.48072 -13.31069 -13.10883 -12.92365 -12.90241 -12.83512 -12.68244 -12.57013 -12.46823 -12.20560 -12.12983 -12.10952 -11.89106 -11.84352 -11.53896 -11.48400 -11.35225 -10.58569 -10.38816 -10.19553 -10.05192 -9.75040 -9.32966 -8.49389 -5.98651 0.32782 1.37307 1.38572 1.50186 2.00740 2.25826 2.27322 2.28708 2.92054 2.98143 3.16938 3.47440 3.57985 3.67919 3.85836 3.88899 3.94077 4.06978 4.12619 4.15478 4.23867 4.27677 4.39642 4.40923 4.49427 4.53219 4.61827 4.63369 4.70135 4.76075 4.83085 4.83521 4.95491 4.96644 5.00838 5.07179 5.08644 5.11278 5.21646 5.23348 5.26617 5.37258 5.47845 5.49434 5.53613 5.60146 5.89285 6.12376 6.38159 6.56538 6.65116 7.08846 7.34554 7.51322 8.07192 8.67980 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007221 B = 0.003325 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3876.539008 B = 8419.606065 C =11137.644294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.004 4.004 3 C -0.234 4.234 4 C 0.534 3.466 5 O -0.582 6.582 6 N -0.708 5.708 7 C 0.136 3.864 8 H 0.049 0.951 9 C -0.153 4.153 10 C -0.116 4.116 11 C 0.080 3.920 12 H 0.049 0.951 13 C -0.136 4.136 14 N -0.677 5.677 15 C 0.070 3.930 16 C 0.435 3.565 17 O -0.623 6.623 18 N -0.572 5.572 19 C -0.338 4.338 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.266 1.266 26 H -0.270 1.270 27 C -0.137 4.137 28 C -0.167 4.167 29 C -0.170 4.170 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.157 0.843 34 H 0.415 0.585 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.337 0.663 44 H 0.050 0.950 45 H 0.104 0.896 46 H 0.396 0.604 47 H 0.279 0.721 48 H 0.137 0.863 49 H 0.098 0.902 50 H 0.119 0.881 51 H 0.117 0.883 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.403 -6.291 -22.879 26.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.006 4.006 3 C -0.255 4.255 4 C 0.325 3.675 5 O -0.464 6.464 6 N -0.360 5.360 7 C 0.031 3.969 8 H 0.067 0.933 9 C -0.211 4.211 10 C -0.154 4.154 11 C -0.029 4.029 12 H 0.067 0.933 13 C -0.194 4.194 14 N -0.311 5.311 15 C -0.063 4.063 16 C 0.223 3.777 17 O -0.510 6.510 18 N -0.209 5.209 19 C -0.468 4.468 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.817 3.183 24 H -0.199 1.199 25 H -0.191 1.191 26 H -0.196 1.196 27 C -0.155 4.155 28 C -0.204 4.204 29 C -0.207 4.207 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.175 0.825 34 H 0.252 0.748 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.158 0.842 44 H 0.068 0.932 45 H 0.122 0.878 46 H 0.229 0.771 47 H 0.088 0.912 48 H 0.155 0.845 49 H 0.116 0.884 50 H 0.138 0.862 51 H 0.135 0.865 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.217 -5.350 -22.401 25.195 hybrid contribution -0.357 -1.036 0.733 1.318 sum 9.859 -6.386 -21.667 24.647 Atomic orbital electron populations 1.21112 0.92228 1.02701 1.02062 1.21993 0.95568 0.93865 0.89145 1.22415 1.01449 0.90603 1.11027 1.19038 0.86664 0.85589 0.76245 1.90792 1.17333 1.88206 1.50105 1.45849 1.13391 1.04634 1.72115 1.20961 0.94626 0.83571 0.97733 0.93332 1.22066 1.01049 1.01356 0.96605 1.22043 0.99775 0.98060 0.95516 1.21719 0.91697 0.98840 0.90690 0.93262 1.21792 0.97485 0.98703 1.01432 1.60291 1.05897 1.56429 1.08473 1.21505 0.96537 0.96188 0.92078 1.20898 0.89844 0.82915 0.84059 1.90481 1.36655 1.45540 1.78325 1.41909 1.19715 1.42289 1.16955 1.19642 0.99476 1.28224 0.99416 0.90507 1.26059 1.00620 0.95205 0.99234 1.69671 1.29814 1.29493 1.27008 0.84991 0.77542 0.78601 0.77203 1.19872 1.19066 1.19552 1.21338 1.00851 0.87699 1.05580 1.23225 1.00314 0.97646 0.99206 1.23053 1.04157 1.01782 0.91713 0.92735 0.91043 0.90428 0.82497 0.74814 0.94432 0.90965 0.90075 0.86944 0.89416 0.93833 0.89611 0.92737 0.84241 0.93191 0.87783 0.77073 0.91187 0.84538 0.88376 0.86230 0.86511 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.21 71.24 0.58 -2.50 16 2 C 0.00 -0.08 5.81 -17.62 -0.10 -0.18 16 3 C -0.23 -4.74 9.67 23.43 0.23 -4.51 16 4 C 0.53 13.97 7.58 86.57 0.66 14.63 16 5 O -0.58 -20.78 12.95 -4.07 -0.05 -20.83 16 6 N -0.71 -13.80 4.44 -446.14 -1.98 -15.79 16 7 C 0.14 2.98 2.48 44.99 0.11 3.09 16 8 H 0.05 1.53 5.72 -2.39 -0.01 1.52 16 9 C -0.15 -2.91 9.48 71.98 0.68 -2.23 16 10 C -0.12 -2.01 4.34 30.59 0.13 -1.87 16 11 C 0.08 1.80 2.59 44.91 0.12 1.91 16 12 H 0.05 1.06 7.28 -2.39 -0.02 1.04 16 13 C -0.14 -2.70 9.41 71.98 0.68 -2.02 16 14 N -0.68 -23.02 5.93 -495.59 -2.94 -25.96 16 15 C 0.07 2.65 5.96 85.55 0.51 3.16 16 16 C 0.44 22.51 7.82 87.65 0.69 23.20 16 17 O -0.62 -37.24 15.78 -3.08 -0.05 -37.29 16 18 N -0.57 -31.32 5.29 -306.98 -1.62 -32.95 16 19 C -0.34 -20.24 9.68 84.04 0.81 -19.43 16 20 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 21 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 22 N -0.92 -51.19 13.05 21.66 0.28 -50.91 16 23 Si 0.99 44.55 29.55 68.60 2.03 46.58 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 27 C -0.14 -2.05 6.01 -11.54 -0.07 -2.12 16 28 C -0.17 -2.16 9.87 30.62 0.30 -1.86 16 29 C -0.17 -2.62 10.21 30.62 0.31 -2.31 16 30 H 0.05 1.62 8.04 -2.39 -0.02 1.60 16 31 H 0.07 2.05 6.13 -2.39 -0.01 2.04 16 32 H 0.08 1.51 5.78 -2.39 -0.01 1.50 16 33 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 34 H 0.41 5.05 8.59 -92.71 -0.80 4.25 16 35 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.04 0.97 7.45 -2.39 -0.02 0.95 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.34 12.88 6.11 -89.70 -0.55 12.33 16 44 H 0.05 1.80 8.06 -2.39 -0.02 1.78 16 45 H 0.10 3.55 7.44 -2.39 -0.02 3.53 16 46 H 0.40 20.56 7.90 -92.71 -0.73 19.82 16 47 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 48 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.10 1.35 6.02 -2.39 -0.01 1.34 16 50 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -78.19 420.55 0.64 -77.55 By element: Atomic # 1 Polarization: 53.93 SS G_CDS: -1.13 Total: 52.80 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 6.11 Total: 6.79 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -6.26 Total: -125.60 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -0.10 Total: -58.12 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -78.19 0.64 -77.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133866958.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.929 kcal (2) G-P(sol) polarization free energy of solvation -78.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds