Wall clock time and date at job start Tue Mar 31 2020 20:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.47096 * 119.99838 * 2 1 4 4 O 1.21619 * 120.00010 * 179.97438 * 3 2 1 5 5 N 1.34777 * 120.00543 * 0.02562 * 3 2 1 6 6 C 1.46497 * 120.00213 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.47072 * 35.00518 * 6 5 3 8 8 C 1.52995 * 109.47667 * 275.00358 * 6 5 3 9 9 C 1.53007 * 109.46823 * 155.00157 * 6 5 3 10 10 C 1.52998 * 109.47220 * 295.00235 * 9 6 5 11 11 H 1.09007 * 109.47288 * 305.00189 * 10 9 6 12 12 C 1.52999 * 109.47428 * 184.99831 * 10 9 6 13 13 N 1.46903 * 109.47157 * 64.99812 * 10 9 6 14 14 C 1.46897 * 111.00422 * 204.99844 * 13 10 9 15 15 C 1.50700 * 109.47648 * 180.02562 * 14 13 10 16 16 O 1.21290 * 119.99286 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00019 * 180.02562 * 15 14 13 18 18 C 1.37105 * 119.99607 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99797 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99828 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00046 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99935 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46933 * 59.99985 * 22 20 18 24 24 H 1.48496 * 109.47079 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46985 * 300.00080 * 22 20 18 26 26 C 1.32997 * 119.99910 * 180.02562 * 2 1 3 27 27 C 1.51399 * 136.31359 * 179.63404 * 26 2 1 28 28 C 1.53384 * 87.51713 * 206.04795 * 27 26 2 29 29 C 1.51406 * 136.31397 * 359.97438 * 26 2 1 30 30 H 1.09002 * 109.47152 * 269.99808 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.99909 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.99890 * 1 2 3 33 33 H 0.97001 * 119.99087 * 0.02562 * 5 3 2 34 34 H 1.09000 * 109.47673 * 180.02562 * 8 6 5 35 35 H 1.09001 * 109.47005 * 300.00201 * 8 6 5 36 36 H 1.09000 * 109.47286 * 59.99814 * 8 6 5 37 37 H 1.08998 * 109.46905 * 55.00111 * 9 6 5 38 38 H 1.09000 * 109.47118 * 175.00217 * 9 6 5 39 39 H 1.09000 * 109.46793 * 300.00549 * 12 10 9 40 40 H 1.09007 * 109.46777 * 59.99840 * 12 10 9 41 41 H 1.08994 * 109.47619 * 180.02562 * 12 10 9 42 42 H 1.00902 * 110.99921 * 81.04421 * 13 10 9 43 43 H 1.09004 * 109.47160 * 300.00786 * 14 13 10 44 44 H 1.09001 * 109.46921 * 59.99643 * 14 13 10 45 45 H 0.96994 * 120.00532 * 359.97438 * 17 15 14 46 46 H 0.96996 * 120.00174 * 180.02562 * 21 20 18 47 47 H 1.09001 * 113.56256 * 320.63105 * 27 26 2 48 48 H 1.08999 * 113.56302 * 91.37095 * 27 26 2 49 49 H 1.08997 * 113.96725 * 220.29009 * 28 27 26 50 50 H 1.09000 * 113.59421 * 88.79392 * 28 27 26 51 51 H 1.08992 * 113.56198 * 268.63185 * 29 26 2 52 52 H 1.09000 * 113.56312 * 39.37182 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 3.4587 1.2739 0.0005 5 7 1.5687 2.4412 0.0005 6 6 2.3012 3.7098 0.0011 7 1 3.2118 3.6038 -0.5885 8 6 2.6652 4.0881 1.4382 9 6 1.4239 4.8055 -0.6080 10 6 1.1630 4.4893 -2.0821 11 1 2.1135 4.3560 -2.5989 12 6 0.3917 5.6449 -2.7229 13 7 0.3722 3.2557 -2.1858 14 6 0.5888 2.5987 -3.4817 15 6 -0.2373 1.3403 -3.5514 16 8 -0.9373 1.0218 -2.6135 17 7 -0.1974 0.5683 -4.6553 18 6 -0.9495 -0.5763 -4.7189 19 1 -1.5735 -0.8595 -3.8841 20 6 -0.9088 -1.3720 -5.8573 21 7 -0.1492 -1.0277 -6.8728 22 14 -1.9329 -2.9319 -5.9436 23 1 -3.3703 -2.5891 -5.7966 24 1 -1.7134 -3.5963 -7.2534 25 1 -1.5287 -3.8506 -4.8491 26 6 2.1720 -1.1518 -0.0005 27 6 3.6250 -1.5771 -0.0074 28 6 3.1708 -2.8816 -0.6742 29 6 1.8137 -2.6229 -0.0007 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 -0.8900 -0.5139 32 1 -0.3633 0.8900 -0.5138 33 1 0.5987 2.4411 0.0013 34 1 3.2098 5.0322 1.4386 35 1 1.7546 4.1941 2.0277 36 1 3.2901 3.3075 1.8721 37 1 0.4755 4.8510 -0.0728 38 1 1.9333 5.7657 -0.5271 39 1 -0.5587 5.7781 -2.2060 40 1 0.9786 6.5603 -2.6459 41 1 0.2055 5.4195 -3.7729 42 1 -0.6080 3.4407 -2.0336 43 1 0.2918 3.2729 -4.2850 44 1 1.6440 2.3476 -3.5897 45 1 0.3627 0.8228 -5.4052 46 1 -0.1211 -1.5829 -7.6676 47 1 4.2566 -0.9599 -0.6463 48 1 4.0420 -1.7197 0.9895 49 1 3.6835 -3.7696 -0.3047 50 1 3.1399 -2.8275 -1.7624 51 1 1.7342 -3.0520 0.9980 52 1 0.9600 -2.8633 -0.6342 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134309120.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:27 Heat of formation + Delta-G solvation = -44.952497 kcal Electronic energy + Delta-G solvation = -31385.903545 eV Core-core repulsion = 27386.022141 eV Total energy + Delta-G solvation = -3999.881405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.72126 -38.55159 -38.03755 -36.98324 -34.74066 -33.86638 -32.90008 -31.38496 -31.01230 -29.81113 -26.86835 -26.18944 -26.08032 -25.13666 -23.91715 -23.20630 -21.26543 -20.75439 -19.89411 -19.20364 -17.88453 -17.80419 -16.20147 -16.13410 -15.87593 -15.24926 -15.22667 -14.78253 -14.71888 -14.38073 -14.06416 -14.01834 -13.73815 -13.47152 -13.18052 -12.98190 -12.71534 -12.50822 -12.32058 -12.19286 -12.13875 -12.09229 -11.87793 -11.66409 -11.57620 -11.50462 -11.37801 -11.23818 -11.13047 -11.00413 -10.78345 -10.70108 -10.59105 -10.44887 -10.20531 -10.11157 -9.46508 -9.13028 -8.69658 -8.38179 -8.30474 -7.94282 -7.90082 -6.40214 -3.80531 1.85893 3.19224 3.25485 3.28930 3.65343 3.86310 3.93347 4.10862 4.35165 4.62576 4.76672 4.86246 4.98474 5.03980 5.16704 5.21185 5.27831 5.30992 5.36497 5.41721 5.49212 5.53056 5.57074 5.72895 5.75581 5.77198 5.82251 5.82703 5.85957 5.93217 6.00764 6.06238 6.08456 6.11110 6.15814 6.18164 6.25508 6.29051 6.33249 6.39745 6.54233 6.59477 6.97854 7.03342 7.20389 7.23702 7.55734 7.66858 8.07180 8.16234 8.63209 8.83728 9.19415 9.56642 10.07701 10.77610 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008645 B = 0.004740 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.164876 B = 5905.599097 C = 8371.811487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.142 4.142 3 C 0.563 3.437 4 O -0.564 6.564 5 N -0.690 5.690 6 C 0.152 3.848 7 H 0.080 0.920 8 C -0.163 4.163 9 C -0.115 4.115 10 C 0.081 3.919 11 H 0.076 0.924 12 C -0.182 4.182 13 N -0.657 5.657 14 C 0.052 3.948 15 C 0.444 3.556 16 O -0.578 6.578 17 N -0.564 5.564 18 C -0.295 4.295 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.927 3.073 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.086 4.086 27 C -0.098 4.098 28 C -0.142 4.142 29 C -0.105 4.105 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.408 0.592 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.346 0.654 43 H 0.040 0.960 44 H 0.081 0.919 45 H 0.391 0.609 46 H 0.271 0.729 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.071 0.929 50 H 0.085 0.915 51 H 0.092 0.908 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.029 8.517 12.105 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.145 4.145 3 C 0.352 3.648 4 O -0.445 6.445 5 N -0.342 5.342 6 C 0.046 3.954 7 H 0.098 0.902 8 C -0.222 4.222 9 C -0.153 4.153 10 C -0.029 4.029 11 H 0.095 0.905 12 C -0.241 4.241 13 N -0.289 5.289 14 C -0.081 4.081 15 C 0.230 3.770 16 O -0.462 6.462 17 N -0.200 5.200 18 C -0.425 4.425 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.754 3.246 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.088 4.088 27 C -0.134 4.134 28 C -0.179 4.179 29 C -0.142 4.142 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.246 0.754 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.165 0.835 43 H 0.058 0.942 44 H 0.099 0.901 45 H 0.224 0.776 46 H 0.081 0.919 47 H 0.099 0.901 48 H 0.106 0.894 49 H 0.089 0.911 50 H 0.103 0.897 51 H 0.110 0.890 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.885 7.833 12.863 15.832 hybrid contribution -1.098 -0.026 -1.473 1.837 sum 3.787 7.807 11.390 14.318 Atomic orbital electron populations 1.20768 0.89727 1.05827 1.00369 1.20523 0.96406 0.90964 1.06634 1.18189 0.86827 0.84166 0.75578 1.90694 1.13869 1.88063 1.51894 1.45748 1.10783 1.04071 1.73601 1.20700 0.95571 0.83547 0.95532 0.90212 1.22203 1.01439 1.01359 0.97154 1.21919 1.00289 0.97754 0.95375 1.21618 0.97469 0.88334 0.95479 0.90544 1.22514 1.00910 0.99426 1.01274 1.60247 1.13498 1.23468 1.31682 1.21667 1.00703 0.95366 0.90371 1.19741 0.86643 0.86248 0.84412 1.90437 1.44690 1.73936 1.37139 1.41844 1.41113 1.21803 1.15254 1.19596 1.21940 0.98867 1.02066 0.88009 1.25230 0.97761 0.99639 0.95269 1.69600 1.39252 1.39624 1.05890 0.85975 0.79930 0.81301 0.77349 1.19996 1.21048 1.19924 1.23048 0.97321 0.93725 0.94658 1.22074 0.94460 0.95946 1.00963 1.22715 0.96815 0.97684 1.00721 1.22219 0.98660 0.92294 1.01037 0.93085 0.91553 0.88340 0.75376 0.92252 0.92767 0.92244 0.91285 0.90560 0.92416 0.92344 0.92595 0.83488 0.94186 0.90123 0.77650 0.91897 0.90115 0.89431 0.91070 0.89671 0.89011 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 9.16 36.01 0.33 -1.51 16 2 C -0.14 -2.48 6.00 -102.85 -0.62 -3.10 16 3 C 0.56 9.87 7.71 -12.67 -0.10 9.77 16 4 O -0.56 -11.17 14.81 5.26 0.08 -11.09 16 5 N -0.69 -9.86 3.74 -54.99 -0.21 -10.06 16 6 C 0.15 1.84 2.57 -67.93 -0.17 1.67 16 7 H 0.08 1.14 7.58 -51.93 -0.39 0.74 16 8 C -0.16 -1.75 9.48 37.16 0.35 -1.40 16 9 C -0.11 -1.10 4.54 -26.73 -0.12 -1.22 16 10 C 0.08 0.90 2.59 -67.71 -0.18 0.72 16 11 H 0.08 0.92 7.80 -51.93 -0.40 0.51 16 12 C -0.18 -1.74 9.16 37.16 0.34 -1.40 16 13 N -0.66 -9.06 3.48 -107.99 -0.38 -9.43 16 14 C 0.05 0.86 5.97 -4.98 -0.03 0.83 16 15 C 0.44 9.66 7.82 -10.99 -0.09 9.57 16 16 O -0.58 -13.43 13.30 5.55 0.07 -13.36 16 17 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 18 C -0.30 -7.94 9.68 -14.93 -0.14 -8.08 16 19 H 0.10 2.84 7.16 -52.49 -0.38 2.47 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 22 Si 0.93 20.83 29.55 -169.99 -5.02 15.80 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 24 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C -0.09 -1.44 6.59 -100.48 -0.66 -2.10 16 27 C -0.10 -1.49 6.99 -27.56 -0.19 -1.68 16 28 C -0.14 -1.97 8.17 -26.18 -0.21 -2.18 16 29 C -0.11 -1.51 7.72 -27.39 -0.21 -1.72 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.22 7.83 -51.93 -0.41 0.81 16 32 H 0.10 1.75 4.59 -51.93 -0.24 1.51 16 33 H 0.41 5.68 5.70 -40.82 -0.23 5.45 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 40 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.05 0.59 7.45 -51.93 -0.39 0.20 16 42 H 0.35 4.84 8.17 -39.29 -0.32 4.52 16 43 H 0.04 0.62 7.44 -51.93 -0.39 0.24 16 44 H 0.08 1.39 8.06 -51.93 -0.42 0.97 16 45 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 46 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.08 1.38 7.49 -51.93 -0.39 0.99 16 48 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 51 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 52 H 0.08 1.20 8.06 -51.93 -0.42 0.78 16 LS Contribution 415.42 15.07 6.26 6.26 Total: -1.00 -29.77 415.42 -9.23 -39.00 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -8.90 Total: 21.77 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -1.80 Total: -1.34 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.08 Total: -57.04 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: 0.15 Total: -24.45 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -29.77 -9.23 -39.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134309120.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.951 kcal (2) G-P(sol) polarization free energy of solvation -29.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds