Wall clock time and date at job start Tue Mar 31 2020 19:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47434 * 2 1 4 4 C 1.53005 * 109.46899 * 240.00029 * 2 1 3 5 5 C 1.52999 * 109.47150 * 175.00027 * 4 2 1 6 6 H 1.09005 * 109.47352 * 305.00326 * 5 4 2 7 7 C 1.52995 * 109.47197 * 185.00058 * 5 4 2 8 8 N 1.46506 * 109.47091 * 64.99957 * 5 4 2 9 9 C 1.34773 * 119.99969 * 204.72183 * 8 5 4 10 10 O 1.21281 * 120.00220 * 0.02562 * 9 8 5 11 11 C 1.50706 * 120.00080 * 180.02562 * 9 8 5 12 12 C 1.53889 * 113.58663 * 279.22403 * 11 9 8 13 13 C 1.53425 * 86.82044 * 220.45450 * 12 11 9 14 14 C 1.52463 * 128.60711 * 165.10057 * 13 12 11 15 15 C 1.52468 * 128.51418 * 245.01155 * 13 12 11 16 16 C 1.53256 * 87.72098 * 25.01353 * 13 12 11 17 17 N 1.46900 * 109.47225 * 120.00263 * 2 1 3 18 18 C 1.46893 * 111.00271 * 274.99931 * 17 2 1 19 19 C 1.50698 * 109.47499 * 180.02562 * 18 17 2 20 20 O 1.21292 * 120.00148 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00108 * 179.97438 * 19 18 17 22 22 C 1.37098 * 120.00012 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99960 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00333 * 180.02562 * 22 21 19 25 25 N 1.31418 * 119.99724 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00406 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46793 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47220 * 119.99821 * 26 24 22 29 29 H 1.48506 * 109.47035 * 239.99839 * 26 24 22 30 30 H 1.08996 * 109.47434 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46524 * 299.99808 * 1 2 3 32 32 H 1.09000 * 109.46951 * 59.99170 * 1 2 3 33 33 H 1.08996 * 109.46681 * 55.00137 * 4 2 1 34 34 H 1.09004 * 109.47038 * 294.99988 * 4 2 1 35 35 H 1.08997 * 109.47379 * 300.00069 * 7 5 4 36 36 H 1.09002 * 109.47097 * 60.00557 * 7 5 4 37 37 H 1.09007 * 109.47360 * 179.97438 * 7 5 4 38 38 H 0.97005 * 119.99811 * 25.00235 * 8 5 4 39 39 H 1.08996 * 112.82966 * 50.33290 * 11 9 8 40 40 H 1.09006 * 113.64687 * 334.91858 * 12 11 9 41 41 H 1.08999 * 113.65074 * 105.92460 * 12 11 9 42 42 H 1.08993 * 117.51506 * 224.95564 * 14 13 12 43 43 H 1.09004 * 117.51212 * 10.06277 * 14 13 12 44 44 H 1.08993 * 117.51762 * 349.80595 * 15 13 12 45 45 H 1.09005 * 117.50721 * 134.86791 * 15 13 12 46 46 H 1.09001 * 113.64429 * 220.48295 * 16 13 12 47 47 H 1.09001 * 113.72384 * 89.49844 * 16 13 12 48 48 H 1.00897 * 110.99976 * 38.95147 * 17 2 1 49 49 H 1.09007 * 109.46936 * 299.99907 * 18 17 2 50 50 H 1.09000 * 109.47397 * 59.99725 * 18 17 2 51 51 H 0.97002 * 120.00402 * 359.97438 * 21 19 18 52 52 H 0.96998 * 119.99803 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3138 6 1 3.8571 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1537 -1.3343 -0.1825 9 6 5.3771 -0.9949 0.2696 10 8 5.9904 -0.0924 -0.2598 11 6 5.9831 -1.7369 1.4330 12 6 5.4683 -1.2605 2.8027 13 6 6.9130 -1.4023 3.2994 14 6 7.5392 -0.8488 4.5745 15 6 7.4668 -2.3613 4.3473 16 6 7.3663 -1.2061 1.8486 17 7 2.0197 -0.6925 1.1994 18 6 2.0825 0.2224 2.3469 19 6 2.5886 -0.5217 3.5557 20 8 2.8689 -1.6987 3.4699 21 7 2.7297 0.1206 4.7321 22 6 3.1896 -0.5565 5.8319 23 1 3.4384 -1.6048 5.7557 24 6 3.3347 0.1054 7.0449 25 7 3.0315 1.3808 7.1378 26 14 3.9620 -0.8170 8.5433 27 1 4.2304 -2.2310 8.1775 28 1 5.2155 -0.1835 9.0256 29 1 2.9382 -0.7699 9.6180 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5140 -0.8899 33 1 1.6053 -0.2617 -2.1369 34 1 1.7516 -1.7716 -1.2056 35 1 3.7721 -2.2741 -2.6701 36 1 3.6263 -0.6886 -3.4658 37 1 5.1507 -1.1478 -2.6703 38 1 3.6647 -2.0586 0.2385 39 1 5.9509 -2.8191 1.3073 40 1 5.1059 -0.2324 2.8001 41 1 4.7728 -1.9548 3.2741 42 1 8.5163 -0.3731 4.4903 43 1 6.8691 -0.4189 5.3191 44 1 6.7493 -2.9262 4.9423 45 1 8.3960 -2.8809 4.1132 46 1 8.1904 -1.8569 1.5563 47 1 7.5337 -0.1634 1.5787 48 1 1.4496 -1.4979 1.4100 49 1 2.7590 1.0460 2.1182 50 1 1.0872 0.6162 2.5526 51 1 2.5060 1.0619 4.8007 52 1 3.1331 1.8430 7.9845 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135446289.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:44 Heat of formation + Delta-G solvation = -47.439161 kcal Electronic energy + Delta-G solvation = -31861.543720 eV Core-core repulsion = 27861.554485 eV Total energy + Delta-G solvation = -3999.989234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.33101 -40.06395 -39.55265 -38.18960 -36.06799 -35.61913 -34.43851 -33.16746 -32.60002 -31.09089 -27.88560 -27.56853 -26.54268 -25.71316 -25.55654 -23.31364 -22.20460 -21.66665 -20.90518 -20.83890 -19.78656 -19.23124 -18.00574 -17.62947 -17.27089 -16.62373 -16.49208 -16.21538 -16.17956 -15.78617 -15.51965 -15.41485 -15.20802 -15.01795 -14.54517 -14.19670 -13.86696 -13.57746 -13.52384 -13.44457 -13.31709 -13.24532 -13.03807 -12.93261 -12.90260 -12.74199 -12.52690 -12.32939 -12.30327 -12.26075 -12.14936 -12.09789 -11.68171 -11.57584 -11.50255 -11.22501 -10.87644 -10.58373 -10.33507 -10.14842 -9.82431 -9.78016 -9.08033 -8.38137 -5.82634 1.36905 1.42779 1.54622 1.87480 2.16374 2.31665 2.52624 2.91453 3.03447 3.31598 3.53837 3.62809 3.69600 3.76902 3.94910 4.00757 4.06614 4.13611 4.29813 4.33438 4.39954 4.44100 4.49375 4.50635 4.57773 4.64188 4.67364 4.76827 4.81794 4.82277 4.90025 4.92072 4.97312 5.00237 5.03188 5.05857 5.10998 5.30253 5.31059 5.31640 5.38444 5.43957 5.44707 5.49653 5.58502 5.89445 6.00343 6.19653 6.57171 6.70779 6.91502 7.24102 7.57222 7.69122 8.23142 8.80197 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010522 B = 0.004718 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.484711 B = 5933.103445 C = 8063.819496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.082 3.918 3 H 0.064 0.936 4 C -0.103 4.103 5 C 0.146 3.854 6 H 0.053 0.947 7 C -0.155 4.155 8 N -0.679 5.679 9 C 0.526 3.474 10 O -0.600 6.600 11 C -0.122 4.122 12 C -0.060 4.060 13 C -0.175 4.175 14 C -0.177 4.177 15 C -0.134 4.134 16 C -0.066 4.066 17 N -0.657 5.657 18 C 0.065 3.935 19 C 0.451 3.549 20 O -0.587 6.587 21 N -0.580 5.580 22 C -0.303 4.303 23 H 0.084 0.916 24 C -0.016 4.016 25 N -0.928 5.928 26 Si 0.977 3.023 27 H -0.268 1.268 28 H -0.279 1.279 29 H -0.278 1.278 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.412 0.588 39 H 0.122 0.878 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.119 0.881 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.347 0.653 49 H 0.075 0.925 50 H 0.054 0.946 51 H 0.388 0.612 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.125 -5.190 -15.583 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.028 4.028 3 H 0.083 0.917 4 C -0.141 4.141 5 C 0.042 3.958 6 H 0.072 0.928 7 C -0.214 4.214 8 N -0.329 5.329 9 C 0.313 3.687 10 O -0.482 6.482 11 C -0.143 4.143 12 C -0.097 4.097 13 C -0.175 4.175 14 C -0.213 4.213 15 C -0.170 4.170 16 C -0.103 4.103 17 N -0.289 5.289 18 C -0.068 4.068 19 C 0.238 3.762 20 O -0.472 6.472 21 N -0.217 5.217 22 C -0.433 4.433 23 H 0.102 0.898 24 C -0.214 4.214 25 N -0.570 5.570 26 Si 0.803 3.197 27 H -0.192 1.192 28 H -0.205 1.205 29 H -0.203 1.203 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.249 0.751 39 H 0.140 0.860 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.137 0.863 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.166 0.834 49 H 0.093 0.907 50 H 0.072 0.928 51 H 0.221 0.779 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.113 -5.164 -16.041 16.852 hybrid contribution -1.031 0.568 1.788 2.141 sum -0.918 -4.596 -14.252 15.003 Atomic orbital electron populations 1.22423 0.95869 1.02690 1.02374 1.21677 0.93322 0.97592 0.90183 0.91721 1.21871 0.92491 1.02364 0.97357 1.20867 0.93592 0.95772 0.85601 0.92836 1.22122 1.00448 1.01892 0.96904 1.45834 1.16562 1.37343 1.33153 1.20510 0.81925 0.82944 0.83305 1.90593 1.63407 1.33334 1.60890 1.22547 0.97710 1.01146 0.92882 1.22363 0.94359 1.00097 0.92922 1.22367 0.97543 1.06596 0.91042 1.22741 1.02035 0.97370 0.99203 1.22766 1.02558 0.91944 0.99771 1.22233 0.95587 1.01255 0.91246 1.60237 1.57746 1.08775 1.02139 1.21457 0.99825 0.95448 0.90069 1.20436 0.83209 0.88178 0.84333 1.90391 1.54764 1.17025 1.85050 1.41949 1.58956 1.12304 1.08488 1.19566 1.40250 0.95621 0.87831 0.89759 1.25853 0.98016 0.96369 1.01199 1.69694 1.50002 1.09789 1.27549 0.85076 0.77875 0.78543 0.78235 1.19203 1.20474 1.20343 0.91648 0.93813 0.90520 0.87913 0.89917 0.91347 0.90107 0.94719 0.75097 0.86005 0.93840 0.89227 0.87561 0.91123 0.89615 0.86267 0.89620 0.90874 0.83355 0.90697 0.92817 0.77903 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.16 71.98 0.66 -2.13 16 2 C 0.08 1.59 2.59 44.92 0.12 1.70 16 3 H 0.06 1.43 7.80 -2.39 -0.02 1.41 16 4 C -0.10 -1.60 4.54 30.60 0.14 -1.46 16 5 C 0.15 3.21 2.57 44.99 0.12 3.33 16 6 H 0.05 1.48 7.59 -2.38 -0.02 1.46 16 7 C -0.16 -2.91 9.48 71.98 0.68 -2.23 16 8 N -0.68 -17.78 3.80 -442.52 -1.68 -19.46 16 9 C 0.53 17.30 7.32 87.66 0.64 17.94 16 10 O -0.60 -23.63 15.57 -3.03 -0.05 -23.67 16 11 C -0.12 -3.86 4.14 -10.94 -0.05 -3.91 16 12 C -0.06 -2.27 6.31 31.04 0.20 -2.08 16 13 C -0.18 -6.00 3.09 -52.31 -0.16 -6.16 16 14 C -0.18 -6.03 10.53 30.46 0.32 -5.71 16 15 C -0.13 -4.06 10.53 30.46 0.32 -3.74 16 16 C -0.07 -2.07 7.42 30.98 0.23 -1.84 16 17 N -0.66 -16.68 3.48 -495.59 -1.72 -18.40 16 18 C 0.06 2.07 5.96 85.56 0.51 2.58 16 19 C 0.45 18.93 6.33 87.66 0.56 19.48 16 20 O -0.59 -26.48 12.45 -3.07 -0.04 -26.52 16 21 N -0.58 -27.89 5.29 -306.99 -1.62 -29.52 16 22 C -0.30 -16.10 9.68 84.04 0.81 -15.28 16 23 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 25 N -0.93 -50.20 13.05 21.66 0.28 -49.92 16 26 Si 0.98 42.65 29.55 68.60 2.03 44.67 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 29 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 30 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 31 H 0.04 0.81 7.45 -2.38 -0.02 0.80 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.41 10.30 7.59 -92.70 -0.70 9.59 16 39 H 0.12 3.35 8.14 -2.39 -0.02 3.34 16 40 H 0.04 1.91 7.37 -2.38 -0.02 1.90 16 41 H 0.09 3.87 5.27 -2.39 -0.01 3.86 16 42 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 43 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 45 H 0.12 2.86 8.14 -2.38 -0.02 2.84 16 46 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.07 2.59 7.44 -2.39 -0.02 2.57 16 48 H 0.35 8.90 8.17 -89.70 -0.73 8.16 16 49 H 0.07 2.52 8.06 -2.38 -0.02 2.50 16 50 H 0.05 1.59 7.44 -2.39 -0.02 1.57 16 51 H 0.39 18.77 7.90 -92.71 -0.73 18.04 16 52 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -63.32 413.03 1.53 -61.79 By element: Atomic # 1 Polarization: 62.11 SS G_CDS: -1.23 Total: 60.88 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 5.56 Total: 0.14 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -4.75 Total: -117.30 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -0.09 Total: -50.19 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -63.32 1.53 -61.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135446289.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.355 kcal (2) G-P(sol) polarization free energy of solvation -63.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds