Wall clock time and date at job start Tue Mar 31 2020 19:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.53001 * 109.46786 * 184.99812 * 4 2 1 6 6 H 1.08997 * 109.47588 * 305.00028 * 5 4 2 7 7 C 1.53007 * 109.46990 * 185.00225 * 5 4 2 8 8 N 1.46499 * 109.47197 * 65.00336 * 5 4 2 9 9 C 1.34773 * 119.99796 * 204.99376 * 8 5 4 10 10 O 1.21277 * 120.00565 * 0.02562 * 9 8 5 11 11 C 1.50710 * 119.99718 * 179.97438 * 9 8 5 12 12 C 1.53884 * 113.58934 * 279.22190 * 11 9 8 13 13 C 1.53426 * 86.82300 * 220.45305 * 12 11 9 14 14 C 1.52464 * 128.60665 * 165.09492 * 13 12 11 15 15 C 1.52458 * 128.52140 * 245.01660 * 13 12 11 16 16 C 1.53255 * 87.71862 * 25.01966 * 13 12 11 17 17 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 18 18 C 1.46901 * 110.99793 * 85.00144 * 17 2 1 19 19 C 1.50701 * 109.46921 * 179.97438 * 18 17 2 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00180 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47117 * 59.99412 * 26 24 22 28 28 H 1.48498 * 109.47600 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47088 * 299.99811 * 26 24 22 30 30 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 31 31 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 32 32 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 34 34 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 35 35 H 1.08997 * 109.46794 * 300.00289 * 7 5 4 36 36 H 1.09005 * 109.47119 * 59.99607 * 7 5 4 37 37 H 1.09000 * 109.47200 * 180.02562 * 7 5 4 38 38 H 0.97002 * 119.99642 * 24.99820 * 8 5 4 39 39 H 1.08997 * 112.82389 * 50.34061 * 11 9 8 40 40 H 1.08996 * 113.64664 * 334.92741 * 12 11 9 41 41 H 1.09002 * 113.64651 * 105.93267 * 12 11 9 42 42 H 1.08993 * 117.51729 * 224.96244 * 14 13 12 43 43 H 1.08995 * 117.50832 * 10.07147 * 14 13 12 44 44 H 1.09000 * 117.51162 * 349.80355 * 15 13 12 45 45 H 1.08999 * 117.51322 * 134.86728 * 15 13 12 46 46 H 1.09004 * 113.64461 * 220.48097 * 16 13 12 47 47 H 1.09002 * 113.73178 * 89.49201 * 16 13 12 48 48 H 1.00899 * 110.99995 * 321.04542 * 17 2 1 49 49 H 1.09002 * 109.47401 * 59.99808 * 18 17 2 50 50 H 1.09001 * 109.46874 * 299.99821 * 18 17 2 51 51 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 52 52 H 0.97000 * 119.99884 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3136 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4923 9 6 5.1612 1.2135 1.0866 10 8 5.9356 0.4341 0.5732 11 6 5.5551 2.6566 1.2700 12 6 4.9904 3.5916 0.1861 13 6 6.3525 4.2974 0.2059 14 6 6.9326 5.2745 -0.8106 15 6 6.6758 5.7256 0.6301 16 6 6.9553 2.9869 0.7237 17 7 2.0196 -0.6925 -1.1995 18 6 2.0824 0.2226 -2.3469 19 6 2.5884 -0.5216 -3.5558 20 8 2.8687 -1.6986 -3.4699 21 7 2.7285 0.1206 -4.7324 22 6 3.1884 -0.5565 -5.8323 23 1 3.4387 -1.6044 -5.7557 24 6 3.3334 0.1055 -7.0452 25 7 3.0292 1.3806 -7.1383 26 14 3.9592 -0.8172 -8.5440 27 1 3.0373 -1.9388 -8.8554 28 1 4.0224 0.1077 -9.7041 29 1 5.3152 -1.3542 -8.2642 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -0.2617 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 3.6546 -1.0593 3.4193 36 1 3.8001 -2.4819 2.3595 37 1 5.1715 -1.3610 2.5386 38 1 3.3284 1.4128 1.9028 39 1 5.3875 3.0148 2.2857 40 1 4.7726 3.0878 -0.7557 41 1 4.1679 4.2170 0.5333 42 1 7.9688 5.1282 -1.1153 43 1 6.2637 5.6531 -1.5834 44 1 5.8381 6.4009 0.8046 45 1 7.5428 5.8758 1.2734 46 1 7.7059 3.1281 1.5013 47 1 7.2860 2.3136 -0.0671 48 1 1.4495 -1.4980 -1.4100 49 1 2.7588 1.0462 -2.1183 50 1 1.0870 0.6163 -2.5525 51 1 2.5041 1.0617 -4.8011 52 1 3.1301 1.8427 -7.9852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135446291.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:52 Heat of formation + Delta-G solvation = -38.109933 kcal Electronic energy + Delta-G solvation = -30076.912517 eV Core-core repulsion = 26077.327828 eV Total energy + Delta-G solvation = -3999.584689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.50735 -38.87433 -38.25900 -37.09601 -35.02424 -33.83046 -33.72855 -31.58491 -31.12030 -30.23287 -26.86733 -26.17592 -25.90080 -24.96115 -23.86904 -22.61385 -21.39325 -20.52376 -20.18927 -19.19957 -18.49237 -17.85160 -17.23744 -16.33015 -15.84410 -15.62603 -15.42496 -15.28300 -14.68969 -14.65396 -14.44330 -14.37317 -13.84111 -13.81165 -13.41429 -13.12958 -12.84494 -12.67083 -12.50828 -12.41128 -12.23264 -12.14112 -12.10049 -11.92069 -11.65300 -11.58938 -11.52158 -11.40583 -11.07947 -10.98145 -10.81104 -10.69470 -10.48406 -10.44720 -10.40463 -10.16591 -9.84870 -9.48531 -9.44972 -8.94301 -8.40237 -7.97369 -7.89903 -6.36979 -3.77408 2.75770 3.22612 3.23947 3.28876 3.33897 3.61456 3.96722 4.14470 4.18508 4.38266 4.40313 4.50389 4.61587 4.67300 4.74729 4.94170 5.09027 5.13216 5.16326 5.21050 5.29791 5.36104 5.39064 5.44743 5.49321 5.50265 5.56083 5.58774 5.68077 5.69476 5.72612 5.73464 5.81214 5.84048 5.85654 5.97654 5.98383 6.07765 6.10256 6.10466 6.21117 6.23528 6.32788 6.42635 6.65706 7.29548 7.59707 7.60638 7.73234 8.11329 8.38659 8.66654 9.22994 9.59565 10.11514 10.80856 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007598 B = 0.003514 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3684.312835 B = 7966.668134 C =10395.142338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.082 3.918 3 H 0.076 0.924 4 C -0.112 4.112 5 C 0.142 3.858 6 H 0.110 0.890 7 C -0.161 4.161 8 N -0.723 5.723 9 C 0.521 3.479 10 O -0.530 6.530 11 C -0.132 4.132 12 C -0.081 4.081 13 C -0.163 4.163 14 C -0.164 4.164 15 C -0.153 4.153 16 C -0.075 4.075 17 N -0.659 5.659 18 C 0.054 3.946 19 C 0.442 3.558 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.393 0.607 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.069 0.931 47 H 0.101 0.899 48 H 0.349 0.651 49 H 0.081 0.919 50 H 0.041 0.959 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.040 8.419 21.369 22.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.029 4.029 3 H 0.094 0.906 4 C -0.150 4.150 5 C 0.038 3.962 6 H 0.128 0.872 7 C -0.220 4.220 8 N -0.374 5.374 9 C 0.307 3.693 10 O -0.405 6.405 11 C -0.153 4.153 12 C -0.119 4.119 13 C -0.163 4.163 14 C -0.201 4.201 15 C -0.190 4.190 16 C -0.113 4.113 17 N -0.291 5.291 18 C -0.079 4.079 19 C 0.227 3.773 20 O -0.466 6.466 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.545 5.545 26 Si 0.757 3.243 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.226 0.774 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.088 0.912 47 H 0.119 0.881 48 H 0.169 0.831 49 H 0.099 0.901 50 H 0.059 0.941 51 H 0.224 0.776 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.394 7.232 21.026 22.238 hybrid contribution -1.198 0.725 -0.822 1.624 sum -0.804 7.957 20.204 21.729 Atomic orbital electron populations 1.22542 0.97581 1.02229 1.01977 1.21594 0.92011 0.98158 0.91129 0.90598 1.21861 0.94463 1.01995 0.96702 1.20993 0.94411 0.80528 1.00226 0.87246 1.22175 1.01751 1.00151 0.97904 1.46075 1.16841 1.11383 1.63085 1.20404 0.81699 0.89657 0.77542 1.90734 1.51025 1.56304 1.42450 1.22617 0.99726 0.92203 1.00805 1.22436 0.94989 0.95933 0.98526 1.22170 0.98084 0.90904 1.05131 1.22811 1.02096 1.02799 0.92392 1.22781 1.02955 0.94975 0.98265 1.22372 0.94379 0.94008 1.00518 1.60155 1.57499 1.08987 1.02480 1.21649 0.99506 0.95693 0.91016 1.19823 0.85041 0.88254 0.84148 1.90524 1.55159 1.16290 1.84580 1.41844 1.57933 1.12393 1.07953 1.19652 1.39918 0.96419 0.86773 0.88028 1.25235 0.97690 0.95760 0.99199 1.69606 1.48854 1.08853 1.27180 0.85934 0.79512 0.78810 0.80070 1.19958 1.20999 1.19862 0.92382 0.92561 0.92330 0.91711 0.90281 0.93179 0.91738 0.92377 0.77363 0.87260 0.88875 0.90780 0.88600 0.88471 0.88710 0.88745 0.91215 0.88081 0.83144 0.90067 0.94119 0.77574 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 9.16 37.16 0.34 -1.46 16 2 C 0.08 0.92 2.53 -67.71 -0.17 0.75 16 3 H 0.08 0.85 7.28 -51.93 -0.38 0.47 16 4 C -0.11 -1.09 4.43 -26.73 -0.12 -1.21 16 5 C 0.14 1.69 2.52 -67.93 -0.17 1.52 16 6 H 0.11 1.83 7.05 -51.93 -0.37 1.46 16 7 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 8 N -0.72 -7.58 4.45 -53.80 -0.24 -7.82 16 9 C 0.52 6.82 7.32 -10.98 -0.08 6.74 16 10 O -0.53 -9.58 15.56 5.56 0.09 -9.49 16 11 C -0.13 -1.32 4.14 -90.85 -0.38 -1.70 16 12 C -0.08 -0.81 7.66 -26.05 -0.20 -1.01 16 13 C -0.16 -1.62 3.09 -154.71 -0.48 -2.10 16 14 C -0.16 -1.60 10.53 -26.94 -0.28 -1.88 16 15 C -0.15 -1.25 10.53 -26.94 -0.28 -1.54 16 16 C -0.08 -0.83 7.42 -26.14 -0.19 -1.03 16 17 N -0.66 -10.41 5.24 -107.99 -0.57 -10.98 16 18 C 0.05 0.97 5.97 -4.97 -0.03 0.94 16 19 C 0.44 10.72 7.82 -10.98 -0.09 10.64 16 20 O -0.58 -16.22 15.78 5.55 0.09 -16.14 16 21 N -0.56 -14.69 5.29 -10.96 -0.06 -14.74 16 22 C -0.30 -8.53 9.68 -14.94 -0.14 -8.68 16 23 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.99 13.05 55.50 0.72 -24.27 16 26 Si 0.93 21.57 29.55 -169.99 -5.02 16.54 16 27 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 32 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.39 2.92 8.60 -40.82 -0.35 2.57 16 39 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.13 8.09 -51.93 -0.42 0.71 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 1.39 7.44 -51.93 -0.39 1.00 16 48 H 0.35 5.75 8.17 -39.29 -0.32 5.43 16 49 H 0.08 1.40 8.06 -51.93 -0.42 0.99 16 50 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 51 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 52 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 LS Contribution 424.95 15.07 6.40 6.40 Total: -1.00 -33.92 424.95 -9.77 -43.69 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -9.17 Total: 17.67 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -2.02 Total: -0.86 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.14 Total: -57.82 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: 0.17 Total: -25.63 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -33.92 -9.77 -43.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135446291.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.580 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds