Wall clock time and date at job start Tue Mar 31 2020 19:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.53001 * 109.46786 * 184.99812 * 4 2 1 6 6 H 1.08997 * 109.47588 * 305.00028 * 5 4 2 7 7 C 1.53007 * 109.46990 * 185.00225 * 5 4 2 8 8 N 1.46499 * 109.47197 * 65.00336 * 5 4 2 9 9 C 1.34773 * 119.99796 * 204.99376 * 8 5 4 10 10 O 1.21277 * 120.00565 * 0.02562 * 9 8 5 11 11 C 1.50710 * 119.99718 * 179.97438 * 9 8 5 12 12 C 1.53884 * 113.58934 * 279.22190 * 11 9 8 13 13 C 1.53426 * 86.82300 * 220.45305 * 12 11 9 14 14 C 1.52464 * 128.60665 * 165.09492 * 13 12 11 15 15 C 1.52458 * 128.52140 * 245.01660 * 13 12 11 16 16 C 1.53255 * 87.71862 * 25.01966 * 13 12 11 17 17 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 18 18 C 1.46901 * 110.99793 * 85.00144 * 17 2 1 19 19 C 1.50701 * 109.46921 * 179.97438 * 18 17 2 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00180 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47117 * 59.99412 * 26 24 22 28 28 H 1.48498 * 109.47600 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47088 * 299.99811 * 26 24 22 30 30 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 31 31 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 32 32 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 34 34 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 35 35 H 1.08997 * 109.46794 * 300.00289 * 7 5 4 36 36 H 1.09005 * 109.47119 * 59.99607 * 7 5 4 37 37 H 1.09000 * 109.47200 * 180.02562 * 7 5 4 38 38 H 0.97002 * 119.99642 * 24.99820 * 8 5 4 39 39 H 1.08997 * 112.82389 * 50.34061 * 11 9 8 40 40 H 1.08996 * 113.64664 * 334.92741 * 12 11 9 41 41 H 1.09002 * 113.64651 * 105.93267 * 12 11 9 42 42 H 1.08993 * 117.51729 * 224.96244 * 14 13 12 43 43 H 1.08995 * 117.50832 * 10.07147 * 14 13 12 44 44 H 1.09000 * 117.51162 * 349.80355 * 15 13 12 45 45 H 1.08999 * 117.51322 * 134.86728 * 15 13 12 46 46 H 1.09004 * 113.64461 * 220.48097 * 16 13 12 47 47 H 1.09002 * 113.73178 * 89.49201 * 16 13 12 48 48 H 1.00899 * 110.99995 * 321.04542 * 17 2 1 49 49 H 1.09002 * 109.47401 * 59.99808 * 18 17 2 50 50 H 1.09001 * 109.46874 * 299.99821 * 18 17 2 51 51 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 52 52 H 0.97000 * 119.99884 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3136 6 1 3.9954 -0.9922 0.3868 7 6 4.0852 -1.4383 2.4924 8 7 3.9479 0.7894 1.4923 9 6 5.1612 1.2135 1.0866 10 8 5.9356 0.4341 0.5732 11 6 5.5551 2.6566 1.2700 12 6 4.9904 3.5916 0.1861 13 6 6.3525 4.2974 0.2059 14 6 6.9326 5.2745 -0.8106 15 6 6.6758 5.7256 0.6301 16 6 6.9553 2.9869 0.7237 17 7 2.0196 -0.6925 -1.1995 18 6 2.0824 0.2226 -2.3469 19 6 2.5884 -0.5216 -3.5558 20 8 2.8687 -1.6986 -3.4699 21 7 2.7285 0.1206 -4.7324 22 6 3.1884 -0.5565 -5.8323 23 1 3.4387 -1.6044 -5.7557 24 6 3.3334 0.1055 -7.0452 25 7 3.0292 1.3806 -7.1383 26 14 3.9592 -0.8172 -8.5440 27 1 3.0373 -1.9388 -8.8554 28 1 4.0224 0.1077 -9.7041 29 1 5.3152 -1.3542 -8.2642 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6054 -0.2617 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 3.6546 -1.0593 3.4193 36 1 3.8001 -2.4819 2.3595 37 1 5.1715 -1.3610 2.5386 38 1 3.3284 1.4128 1.9028 39 1 5.3875 3.0148 2.2857 40 1 4.7726 3.0878 -0.7557 41 1 4.1679 4.2170 0.5333 42 1 7.9688 5.1282 -1.1153 43 1 6.2637 5.6531 -1.5834 44 1 5.8381 6.4009 0.8046 45 1 7.5428 5.8758 1.2734 46 1 7.7059 3.1281 1.5013 47 1 7.2860 2.3136 -0.0671 48 1 1.4495 -1.4980 -1.4100 49 1 2.7588 1.0462 -2.1183 50 1 1.0870 0.6163 -2.5525 51 1 2.5041 1.0617 -4.8011 52 1 3.1301 1.8427 -7.9852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135446291.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:51 Heat of formation + Delta-G solvation = -62.152241 kcal Electronic energy + Delta-G solvation = -30077.955070 eV Core-core repulsion = 26077.327828 eV Total energy + Delta-G solvation = -4000.627241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.44040 -40.26674 -39.59674 -38.30309 -36.27015 -35.81327 -34.55256 -33.32895 -32.58444 -31.29591 -27.97405 -27.62903 -26.73745 -25.90763 -25.60926 -23.31017 -22.33001 -21.51439 -21.20792 -21.05365 -19.94144 -19.29106 -18.20730 -17.79371 -17.14701 -16.83995 -16.46533 -16.40978 -16.15812 -15.98654 -15.57866 -15.53978 -15.42726 -15.04011 -14.75509 -14.33530 -13.96729 -13.71947 -13.56688 -13.54030 -13.38036 -13.35005 -13.14666 -13.03167 -12.92829 -12.82014 -12.65094 -12.46094 -12.42627 -12.31727 -12.14788 -12.01468 -11.71002 -11.64018 -11.52655 -11.28681 -11.23421 -10.67896 -10.45839 -10.37006 -10.03771 -9.93701 -9.21628 -8.48758 -5.97680 1.37195 1.38713 1.49901 1.73878 2.03015 2.27285 2.32791 2.85927 2.95763 3.18161 3.40361 3.54539 3.58555 3.68411 3.75512 3.93301 3.96330 4.07989 4.20872 4.28119 4.33323 4.41943 4.42728 4.46430 4.55822 4.57868 4.63497 4.75975 4.78228 4.79512 4.81252 4.83554 4.87726 4.92113 5.00573 5.04136 5.04793 5.19316 5.25704 5.28077 5.29777 5.33639 5.38033 5.39516 5.43985 5.71090 5.91374 6.16451 6.48924 6.57962 6.72638 7.10243 7.44942 7.53352 8.09371 8.68558 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007598 B = 0.003514 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3684.312835 B = 7966.668134 C =10395.142338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.081 3.919 3 H 0.081 0.919 4 C -0.102 4.102 5 C 0.143 3.857 6 H 0.054 0.946 7 C -0.154 4.154 8 N -0.704 5.704 9 C 0.514 3.486 10 O -0.591 6.591 11 C -0.118 4.118 12 C -0.077 4.077 13 C -0.173 4.173 14 C -0.185 4.185 15 C -0.124 4.124 16 C -0.085 4.085 17 N -0.676 5.676 18 C 0.073 3.927 19 C 0.435 3.565 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.337 4.337 23 H 0.076 0.924 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.270 1.270 28 H -0.267 1.267 29 H -0.275 1.275 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.031 0.969 38 H 0.414 0.586 39 H 0.148 0.852 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.107 0.893 46 H 0.082 0.918 47 H 0.060 0.940 48 H 0.343 0.657 49 H 0.088 0.912 50 H 0.066 0.934 51 H 0.395 0.605 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 10.583 23.647 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.028 4.028 3 H 0.099 0.901 4 C -0.140 4.140 5 C 0.039 3.961 6 H 0.072 0.928 7 C -0.213 4.213 8 N -0.356 5.356 9 C 0.301 3.699 10 O -0.472 6.472 11 C -0.138 4.138 12 C -0.115 4.115 13 C -0.173 4.173 14 C -0.222 4.222 15 C -0.161 4.161 16 C -0.123 4.123 17 N -0.309 5.309 18 C -0.060 4.060 19 C 0.223 3.777 20 O -0.510 6.510 21 N -0.210 5.210 22 C -0.466 4.466 23 H 0.094 0.906 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.195 1.195 28 H -0.191 1.191 29 H -0.201 1.201 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.251 0.749 39 H 0.166 0.834 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.132 0.868 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.079 0.921 48 H 0.162 0.838 49 H 0.106 0.894 50 H 0.084 0.916 51 H 0.229 0.771 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.421 9.451 23.343 25.224 hybrid contribution -0.628 0.036 -1.503 1.629 sum -2.049 9.487 21.840 23.900 Atomic orbital electron populations 1.22456 0.95702 1.02523 1.02907 1.21733 0.93444 0.98068 0.89539 0.90078 1.21834 0.92443 1.02326 0.97392 1.20834 0.95853 0.81176 0.98287 0.92789 1.22098 1.00169 1.00369 0.98625 1.45919 1.16362 1.11320 1.62007 1.21046 0.81721 0.90620 0.76491 1.90715 1.52985 1.58171 1.45283 1.22670 0.98572 0.89896 1.02710 1.22355 0.96102 0.95952 0.97085 1.22186 0.97653 0.91321 1.06151 1.22884 1.01854 1.03754 0.93661 1.22885 1.03753 0.93022 0.96408 1.22310 0.95662 0.94345 0.99983 1.60160 1.58688 1.09019 1.02998 1.21432 1.00396 0.95142 0.88990 1.20968 0.83430 0.88074 0.85222 1.90486 1.56608 1.18439 1.85447 1.41915 1.58365 1.12509 1.08223 1.19623 1.42431 0.95938 0.88636 0.90584 1.26022 0.97109 0.96635 1.01312 1.69664 1.48517 1.09638 1.28201 0.85015 0.78642 0.77966 0.76871 1.19471 1.19124 1.20056 0.89484 0.93541 0.92404 0.87652 0.90346 0.90163 0.91475 0.94936 0.74935 0.83404 0.92091 0.87762 0.89116 0.88775 0.86840 0.87453 0.89934 0.92095 0.83827 0.89372 0.91633 0.77098 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 9.16 71.98 0.66 -2.25 16 2 C 0.08 1.67 2.53 44.91 0.11 1.79 16 3 H 0.08 1.59 7.28 -2.39 -0.02 1.58 16 4 C -0.10 -1.73 4.43 30.59 0.14 -1.59 16 5 C 0.14 3.34 2.52 44.99 0.11 3.45 16 6 H 0.05 1.92 7.05 -2.39 -0.02 1.90 16 7 C -0.15 -3.18 9.48 71.98 0.68 -2.50 16 8 N -0.70 -13.85 4.45 -442.52 -1.97 -15.82 16 9 C 0.51 13.62 7.32 87.66 0.64 14.26 16 10 O -0.59 -23.04 15.56 -3.02 -0.05 -23.09 16 11 C -0.12 -2.20 4.14 -10.94 -0.05 -2.25 16 12 C -0.08 -1.44 7.66 31.04 0.24 -1.21 16 13 C -0.17 -3.28 3.09 -52.31 -0.16 -3.44 16 14 C -0.18 -3.51 10.53 30.46 0.32 -3.19 16 15 C -0.12 -1.69 10.53 30.46 0.32 -1.37 16 16 C -0.09 -1.92 7.42 30.98 0.23 -1.69 16 17 N -0.68 -21.49 5.24 -495.56 -2.60 -24.09 16 18 C 0.07 2.64 5.97 85.56 0.51 3.15 16 19 C 0.44 21.98 7.82 87.66 0.69 22.67 16 20 O -0.62 -36.57 15.78 -3.07 -0.05 -36.62 16 21 N -0.57 -30.94 5.29 -306.98 -1.62 -32.56 16 22 C -0.34 -20.02 9.68 84.04 0.81 -19.21 16 23 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 24 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16 25 N -0.92 -51.00 13.05 21.66 0.28 -50.72 16 26 Si 0.99 44.53 29.55 68.60 2.03 46.55 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 28 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 29 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.87 7.45 -2.39 -0.02 0.85 16 32 H 0.06 0.98 8.13 -2.39 -0.02 0.96 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.41 4.71 8.60 -92.71 -0.80 3.92 16 39 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.53 8.09 -2.39 -0.02 1.51 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 44 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 47 H 0.06 1.86 7.44 -2.39 -0.02 1.84 16 48 H 0.34 11.49 8.17 -89.69 -0.73 10.76 16 49 H 0.09 3.07 8.06 -2.39 -0.02 3.06 16 50 H 0.07 2.05 7.44 -2.39 -0.02 2.04 16 51 H 0.40 20.24 7.90 -92.71 -0.73 19.50 16 52 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -80.22 424.95 0.42 -79.80 By element: Atomic # 1 Polarization: 51.39 SS G_CDS: -1.33 Total: 50.06 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 5.72 Total: 6.48 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -5.91 Total: -123.18 kcal Atomic # 8 Polarization: -59.61 SS G_CDS: -0.10 Total: -59.71 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -80.22 0.42 -79.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135446291.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.650 kcal (2) G-P(sol) polarization free energy of solvation -80.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds