Wall clock time and date at job start Tue Mar 31 2020 19:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52994 * 109.47180 * 239.99796 * 2 1 3 5 5 C 1.53005 * 109.47257 * 174.99539 * 4 2 1 6 6 C 1.52994 * 109.47257 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47434 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47412 * 180.02562 * 7 6 5 9 9 C 1.46904 * 110.99954 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47024 * 179.97438 * 9 8 7 11 11 O 1.21289 * 119.99910 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99986 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00302 * 180.02562 * 12 10 9 14 14 H 1.08008 * 119.99722 * 359.97438 * 13 12 10 15 15 C 1.38943 * 120.00382 * 179.97438 * 13 12 10 16 16 N 1.31417 * 119.99839 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00180 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47492 * 60.00031 * 17 15 13 19 19 H 1.48507 * 109.47167 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47097 * 299.99679 * 17 15 13 21 21 N 1.46499 * 109.46898 * 119.99837 * 2 1 3 22 22 C 1.34777 * 120.00195 * 274.99732 * 21 2 1 23 23 O 1.21613 * 119.99966 * 0.02562 * 22 21 2 24 24 C 1.47107 * 119.99707 * 180.27735 * 22 21 2 25 25 C 1.32994 * 119.99517 * 179.72624 * 24 22 21 26 26 C 1.50702 * 119.99736 * 179.97438 * 25 24 22 27 27 C 1.52998 * 117.49723 * 188.61924 * 26 25 24 28 28 C 1.52996 * 60.00430 * 252.51549 * 27 26 25 29 29 H 1.09000 * 109.47470 * 299.99796 * 1 2 3 30 30 H 1.08998 * 109.47338 * 59.99872 * 1 2 3 31 31 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47546 * 294.99915 * 4 2 1 33 33 H 1.09007 * 109.46935 * 55.00254 * 4 2 1 34 34 H 1.08992 * 109.47149 * 300.00618 * 5 4 2 35 35 H 1.09007 * 109.46565 * 60.00488 * 5 4 2 36 36 H 1.09006 * 109.47394 * 300.00511 * 6 5 4 37 37 H 1.09003 * 109.47346 * 60.00477 * 6 5 4 38 38 H 1.09006 * 109.46898 * 300.00387 * 7 6 5 39 39 H 1.09003 * 109.46813 * 59.99724 * 7 6 5 40 40 H 1.00904 * 110.99852 * 56.05071 * 8 7 6 41 41 H 1.08995 * 109.47737 * 300.00637 * 9 8 7 42 42 H 1.09006 * 109.46749 * 60.00537 * 9 8 7 43 43 H 0.97000 * 120.00134 * 0.02562 * 12 10 9 44 44 H 0.97005 * 119.99953 * 180.02562 * 16 15 13 45 45 H 0.97000 * 120.00069 * 95.00460 * 21 2 1 46 46 H 1.07991 * 119.99994 * 359.72991 * 24 22 21 47 47 H 1.08001 * 120.00496 * 0.02562 * 25 24 22 48 48 H 1.08996 * 115.54942 * 334.33506 * 26 25 24 49 49 H 1.08994 * 117.50162 * 0.02562 * 27 26 25 50 50 H 1.09007 * 117.49519 * 145.02306 * 27 26 25 51 51 H 1.08996 * 117.49893 * 252.51620 * 28 27 26 52 52 H 1.08995 * 117.51779 * 107.48245 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 6 4.0749 -1.3350 -2.5625 7 6 5.5997 -1.2275 -2.6267 8 7 6.0894 -1.9201 -3.8261 9 6 7.5530 -1.8369 -3.9214 10 6 8.0174 -2.5574 -5.1608 11 8 7.2087 -3.0875 -5.8930 12 7 9.3313 -2.6126 -5.4557 13 6 9.7539 -3.2676 -6.5835 14 1 9.0338 -3.7396 -7.2356 15 6 11.1084 -3.3241 -6.8878 16 7 11.9845 -2.7493 -6.0947 17 14 11.6840 -4.2159 -8.4249 18 1 11.0736 -3.5837 -9.6219 19 1 13.1637 -4.1326 -8.5208 20 1 11.2727 -5.6410 -8.3537 21 7 2.0182 -0.6906 1.1962 22 6 2.1470 -0.0182 2.3572 23 8 1.8574 1.1617 2.4119 24 6 2.6431 -0.7103 3.5567 25 6 2.7753 -0.0454 4.7010 26 6 3.2830 -0.7545 5.9300 27 6 3.2232 0.0031 7.2579 28 6 4.5696 -0.2274 6.5688 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7715 -1.2055 33 1 1.6053 -0.2617 -2.1369 34 1 3.8531 0.4370 -1.3573 35 1 3.9994 -1.0728 -0.4259 36 1 3.7865 -2.3853 -2.5184 37 1 3.6403 -0.8760 -3.4505 38 1 5.8884 -0.1773 -2.6707 39 1 6.0340 -1.6868 -1.7387 40 1 5.6518 -1.5546 -4.6587 41 1 7.8549 -0.7909 -3.9740 42 1 8.0011 -2.3007 -3.0426 43 1 9.9781 -2.1890 -4.8699 44 1 12.9302 -2.7884 -6.3073 45 1 2.2490 -1.6317 1.1527 46 1 2.9000 -1.7581 3.5082 47 1 2.5181 1.0024 4.7496 48 1 3.1124 -1.8307 5.9560 49 1 2.8163 1.0141 7.2427 50 1 3.0130 -0.5748 8.1580 51 1 5.2451 -0.9569 7.0154 52 1 5.0489 0.6318 6.0999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169983215.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:35 Heat of formation + Delta-G solvation = -58.347519 kcal Electronic energy + Delta-G solvation = -27154.695488 eV Core-core repulsion = 23154.233231 eV Total energy + Delta-G solvation = -4000.462256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.18994 -38.32028 -38.12594 -37.20811 -35.85534 -33.96972 -33.35659 -32.89955 -31.26866 -31.06241 -28.63940 -26.20270 -25.14997 -24.16956 -22.90564 -22.69321 -21.51593 -21.21855 -20.84407 -19.93172 -19.18267 -17.86436 -17.66706 -16.84194 -16.19367 -15.97729 -15.71354 -15.24018 -15.02044 -14.93342 -14.50155 -14.45118 -14.15853 -14.07558 -13.72512 -13.44274 -13.21591 -13.14493 -13.04562 -12.51731 -12.32968 -12.18000 -12.14919 -11.99157 -11.69824 -11.63684 -11.57844 -11.48680 -11.33216 -11.10822 -11.01020 -10.99964 -10.79712 -10.65836 -10.43329 -10.20112 -10.18095 -9.63123 -9.48891 -9.32094 -8.44014 -8.02643 -7.94252 -6.40407 -3.81357 0.92221 2.86907 2.93458 3.21030 3.26485 3.31022 3.42239 3.92586 4.03912 4.08174 4.24155 4.32684 4.42833 4.50974 4.57483 4.66361 4.71118 4.76596 4.87126 5.00431 5.08656 5.11804 5.15440 5.21804 5.25635 5.32501 5.34092 5.39160 5.51361 5.52441 5.54393 5.57301 5.64884 5.69753 5.76816 5.83137 5.85376 5.89309 5.93282 5.99438 6.01697 6.15716 6.22191 6.25810 6.31313 7.21099 7.26642 7.56052 7.70588 7.93721 8.07531 8.62840 9.19003 9.55754 10.07448 10.77276 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.001430 C = 0.001306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.585988 B =19571.972819 C =21429.293031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.117 4.117 7 C 0.059 3.941 8 N -0.671 5.671 9 C 0.050 3.950 10 C 0.441 3.559 11 O -0.584 6.584 12 N -0.564 5.564 13 C -0.300 4.300 14 H 0.102 0.898 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.273 1.273 21 N -0.719 5.719 22 C 0.547 3.453 23 O -0.549 6.549 24 C -0.216 4.216 25 C -0.032 4.032 26 C -0.143 4.143 27 C -0.171 4.171 28 C -0.165 4.165 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.024 0.976 39 H 0.068 0.932 40 H 0.348 0.652 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.401 0.599 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.115 0.885 49 H 0.099 0.901 50 H 0.100 0.900 51 H 0.101 0.899 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.460 6.093 24.260 31.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.071 4.071 8 N -0.303 5.303 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.468 6.468 12 N -0.201 5.201 13 C -0.430 4.430 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 N -0.370 5.370 22 C 0.336 3.664 23 O -0.428 6.428 24 C -0.237 4.237 25 C -0.052 4.052 26 C -0.161 4.161 27 C -0.208 4.208 28 C -0.202 4.202 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.167 0.833 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.236 0.764 46 H 0.145 0.855 47 H 0.145 0.855 48 H 0.133 0.867 49 H 0.117 0.883 50 H 0.118 0.882 51 H 0.120 0.880 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.984 5.967 24.041 31.827 hybrid contribution 1.092 0.197 -0.677 1.300 sum -18.893 6.164 23.364 30.672 Atomic orbital electron populations 1.22175 0.95281 1.02149 1.02559 1.21025 0.93893 0.97675 0.83823 0.89378 1.21918 0.96365 1.01195 0.96985 1.21553 0.94603 1.00967 0.98405 1.21553 0.94920 1.01463 0.97521 1.21975 0.95044 0.95808 0.94261 1.60093 1.04829 1.60027 1.05336 1.21668 0.89054 0.98679 0.98827 1.19833 0.83398 0.86108 0.88050 1.90515 1.53417 1.50495 1.52363 1.41860 1.05434 1.48942 1.23830 1.19665 0.91994 1.30324 1.01014 0.87978 1.25258 0.95600 0.97808 0.99245 1.69611 1.02545 1.44262 1.37948 0.85912 0.77227 0.79804 0.81235 1.19925 1.20981 1.19891 1.46006 1.67254 1.14090 1.09639 1.18563 0.77483 0.86611 0.83703 1.90784 1.50899 1.15888 1.85246 1.22513 1.06792 1.01099 0.93301 1.23074 0.90659 0.99629 0.91793 1.21350 1.03125 0.99394 0.92271 1.23023 1.00800 1.01824 0.95135 1.22998 0.90502 1.03665 1.03000 0.92214 0.91513 0.92433 0.91133 0.90158 0.91987 0.91839 0.90937 0.92005 0.95784 0.91324 0.83279 0.93971 0.89697 0.77456 0.91841 0.76416 0.85524 0.85487 0.86665 0.88276 0.88195 0.88031 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.48 37.16 0.35 -0.81 16 2 C 0.14 1.06 2.57 -67.94 -0.17 0.89 16 3 H 0.09 0.84 7.58 -51.93 -0.39 0.45 16 4 C -0.13 -0.84 4.75 -26.73 -0.13 -0.97 16 5 C -0.12 -0.94 5.10 -26.73 -0.14 -1.08 16 6 C -0.12 -1.17 5.47 -26.74 -0.15 -1.32 16 7 C 0.06 0.73 5.68 -3.83 -0.02 0.71 16 8 N -0.67 -11.11 6.13 -115.05 -0.70 -11.81 16 9 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 10 C 0.44 10.63 7.82 -10.99 -0.09 10.54 16 11 O -0.58 -16.13 15.78 5.55 0.09 -16.05 16 12 N -0.56 -14.52 5.29 -10.96 -0.06 -14.58 16 13 C -0.30 -8.48 9.68 -14.94 -0.14 -8.63 16 14 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 17 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 N -0.72 -5.20 4.53 -54.99 -0.25 -5.45 16 22 C 0.55 5.19 7.73 -12.66 -0.10 5.10 16 23 O -0.55 -7.28 15.88 5.27 0.08 -7.20 16 24 C -0.22 -1.54 9.67 -37.80 -0.37 -1.90 16 25 C -0.03 -0.22 9.24 -36.13 -0.33 -0.56 16 26 C -0.14 -0.76 6.01 -91.77 -0.55 -1.31 16 27 C -0.17 -0.77 10.23 -26.73 -0.27 -1.05 16 28 C -0.16 -0.80 10.23 -26.73 -0.27 -1.07 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.50 7.75 -51.92 -0.40 0.10 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.35 5.93 8.43 -39.29 -0.33 5.60 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.40 2.01 8.59 -40.82 -0.35 1.66 16 46 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 47 H 0.13 1.03 7.49 -52.49 -0.39 0.64 16 48 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 52 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 436.55 15.07 6.58 6.58 Total: -1.00 -33.76 436.55 -10.38 -44.14 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -9.31 Total: 12.26 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.51 Total: -0.06 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.29 Total: -55.83 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.17 Total: -23.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.58 Total: 6.58 kcal Total: -33.76 -10.38 -44.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169983215.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.203 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds