Wall clock time and date at job start Tue Mar 31 2020 19:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 C 1.52999 * 109.47283 * 175.00170 * 4 2 1 6 6 C 1.53001 * 109.46946 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46946 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.47454 * 180.02562 * 7 6 5 9 9 C 1.46896 * 111.00497 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47217 * 179.97438 * 9 8 7 11 11 O 1.21297 * 120.00094 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99986 * 179.97438 * 10 9 8 13 13 C 1.37104 * 120.00109 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99441 * 359.97438 * 13 12 10 15 15 C 1.38953 * 119.99791 * 179.97438 * 13 12 10 16 16 N 1.31403 * 120.00072 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99509 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47214 * 90.00058 * 17 15 13 19 19 H 1.48501 * 109.47047 * 209.99740 * 17 15 13 20 20 H 1.48498 * 109.47410 * 329.99763 * 17 15 13 21 21 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 22 22 C 1.34777 * 120.00199 * 275.00460 * 21 2 1 23 23 O 1.21283 * 119.99750 * 359.97438 * 22 21 2 24 24 C 1.50702 * 119.99928 * 180.27479 * 22 21 2 25 25 H 1.09007 * 115.54675 * 325.44025 * 24 22 21 26 26 C 1.53000 * 117.49991 * 111.11533 * 24 22 21 27 27 C 1.52990 * 59.99814 * 107.48755 * 26 24 22 28 28 C 1.52993 * 138.58594 * 130.89520 * 27 26 24 29 29 C 1.53000 * 138.58789 * 229.10650 * 27 26 24 30 30 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 31 31 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 32 32 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46798 * 294.99777 * 4 2 1 34 34 H 1.08995 * 109.47322 * 54.99237 * 4 2 1 35 35 H 1.08997 * 109.47141 * 299.99510 * 5 4 2 36 36 H 1.08998 * 109.47192 * 59.99829 * 5 4 2 37 37 H 1.08997 * 109.47150 * 299.99932 * 6 5 4 38 38 H 1.08998 * 109.46966 * 60.00118 * 6 5 4 39 39 H 1.09006 * 109.46883 * 299.99982 * 7 6 5 40 40 H 1.08995 * 109.47704 * 59.99728 * 7 6 5 41 41 H 1.00903 * 110.99932 * 303.95342 * 8 7 6 42 42 H 1.09004 * 109.46909 * 299.99507 * 9 8 7 43 43 H 1.09002 * 109.46997 * 59.99300 * 9 8 7 44 44 H 0.97003 * 119.99837 * 359.97438 * 12 10 9 45 45 H 0.97005 * 119.99787 * 180.02562 * 16 15 13 46 46 H 0.97000 * 119.99484 * 94.99557 * 21 2 1 47 47 H 1.09001 * 117.49400 * 214.98273 * 26 24 22 48 48 H 1.09005 * 117.49706 * 359.97438 * 26 24 22 49 49 H 1.09006 * 117.49748 * 238.37310 * 28 27 26 50 50 H 1.08993 * 117.50166 * 23.40071 * 28 27 26 51 51 H 1.09000 * 117.49118 * 336.59854 * 29 27 26 52 52 H 1.08991 * 117.49709 * 121.59392 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0748 -1.3349 -2.5627 7 6 5.5996 -1.2264 -2.6274 8 7 6.0893 -1.9188 -3.8268 9 6 7.5528 -1.8348 -3.9227 10 6 8.0172 -2.5551 -5.1622 11 8 7.2085 -3.0859 -5.8941 12 7 9.3310 -2.6087 -5.4581 13 6 9.7535 -3.2636 -6.5861 14 1 9.0335 -3.7369 -7.2373 15 6 11.1080 -3.3183 -6.8914 16 7 11.9838 -2.7420 -6.0993 17 14 11.6836 -4.2112 -8.4278 18 1 11.7187 -3.2612 -9.5686 19 1 13.0438 -4.7617 -8.2001 20 1 10.7459 -5.3206 -8.7363 21 7 2.0183 -0.6906 1.1962 22 6 2.1470 -0.0182 2.3572 23 8 1.8589 1.1586 2.4115 24 6 2.6553 -0.7271 3.5861 25 1 2.3591 -1.7718 3.6824 26 6 4.0392 -0.3342 4.1067 27 6 2.7847 0.0924 4.8715 28 6 2.2519 0.0695 6.3054 29 6 2.1926 1.3614 5.4878 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1369 35 1 3.8532 0.4370 -1.3573 36 1 3.9994 -1.0728 -0.4260 37 1 3.7865 -2.3851 -2.5186 38 1 3.6402 -0.8757 -3.4505 39 1 5.8875 -0.1760 -2.6717 40 1 6.0346 -1.6853 -1.7396 41 1 5.7803 -2.8792 -3.8415 42 1 7.8539 -0.7885 -3.9758 43 1 8.0016 -2.2979 -3.0440 44 1 9.9775 -2.1833 -4.8734 45 1 12.9294 -2.7800 -6.3126 46 1 2.2490 -1.6317 1.1526 47 1 4.6535 -1.1202 4.5458 48 1 4.5823 0.4368 3.5601 49 1 1.3137 -0.4556 6.4854 50 1 2.9821 0.0180 7.1130 51 1 2.8840 2.1597 5.7574 52 1 1.2158 1.6863 5.1296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175441704.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:41 Heat of formation + Delta-G solvation = -36.403550 kcal Electronic energy + Delta-G solvation = -27630.788241 eV Core-core repulsion = 23631.277547 eV Total energy + Delta-G solvation = -3999.510694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.46547 -38.39554 -38.22509 -36.98925 -35.81434 -33.97725 -33.41824 -32.99267 -31.29183 -31.09453 -28.65231 -26.21146 -24.98059 -24.13346 -22.79125 -22.63708 -21.28708 -21.22804 -20.82566 -19.51685 -19.18713 -17.86920 -17.54508 -16.64848 -16.21778 -15.78505 -15.61881 -15.40475 -15.04074 -14.81054 -14.62147 -14.51803 -14.40542 -14.14891 -13.71832 -13.49284 -13.16294 -13.14187 -12.92642 -12.55314 -12.26117 -12.19948 -12.13657 -11.87995 -11.77328 -11.56682 -11.46158 -11.32997 -11.16079 -11.02630 -10.80083 -10.67100 -10.65013 -10.55352 -10.42557 -10.38975 -10.21035 -10.01464 -9.50245 -9.40523 -8.44548 -8.03203 -7.94777 -6.41074 -3.81882 2.15455 2.67237 3.18436 3.26867 3.28691 3.32753 3.39734 3.84802 3.91972 4.05473 4.22019 4.31769 4.37359 4.52333 4.61555 4.68772 4.71899 4.97099 4.99739 5.07274 5.10455 5.13478 5.21381 5.22706 5.24500 5.24881 5.27253 5.30376 5.37942 5.49504 5.50942 5.53850 5.55857 5.61497 5.71592 5.75470 5.77202 5.81366 5.85082 5.91771 6.01143 6.14044 6.21781 6.23533 6.30625 7.17060 7.26029 7.55774 7.70072 7.92348 8.07292 8.62268 9.18595 9.55269 10.06891 10.76711 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.001442 C = 0.001355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.014077 B =19413.578502 C =20652.654090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.117 4.117 7 C 0.059 3.941 8 N -0.671 5.671 9 C 0.051 3.949 10 C 0.441 3.559 11 O -0.584 6.584 12 N -0.564 5.564 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 N -0.721 5.721 22 C 0.542 3.458 23 O -0.534 6.534 24 C -0.144 4.144 25 H 0.123 0.877 26 C -0.099 4.099 27 C -0.202 4.202 28 C -0.130 4.130 29 C -0.113 4.113 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.348 0.652 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.400 0.600 47 H 0.107 0.893 48 H 0.102 0.898 49 H 0.096 0.904 50 H 0.099 0.901 51 H 0.097 0.903 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.942 5.090 23.884 31.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.164 4.164 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.070 4.070 8 N -0.303 5.303 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.468 6.468 12 N -0.201 5.201 13 C -0.430 4.430 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 N -0.373 5.373 22 C 0.328 3.672 23 O -0.410 6.410 24 C -0.165 4.165 25 H 0.141 0.859 26 C -0.136 4.136 27 C -0.202 4.202 28 C -0.167 4.167 29 C -0.150 4.150 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.167 0.833 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.235 0.765 47 H 0.125 0.875 48 H 0.120 0.880 49 H 0.114 0.886 50 H 0.117 0.883 51 H 0.115 0.885 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.588 6.134 22.967 31.448 hybrid contribution 1.207 -1.340 0.211 1.816 sum -19.381 4.794 23.178 30.592 Atomic orbital electron populations 1.22175 0.95316 1.02108 1.02568 1.21027 0.93849 0.97685 0.83776 0.89376 1.21917 0.96402 1.01093 0.97034 1.21550 0.94567 1.01189 0.98189 1.21553 0.95123 1.00723 0.98064 1.21972 0.94814 0.99467 0.90795 1.60064 1.09707 1.21689 1.38843 1.21665 0.88517 1.01215 0.96796 1.19836 0.83322 0.85884 0.88349 1.90518 1.53346 1.50547 1.52373 1.41870 1.05437 1.48899 1.23878 1.19716 0.92000 1.30181 1.01056 0.87920 1.25260 0.95610 0.97840 0.99231 1.69613 1.02530 1.44303 1.37894 0.85850 0.77846 0.79515 0.81029 1.20384 1.20949 1.19432 1.46060 1.67543 1.14139 1.09529 1.19684 0.77181 0.86768 0.83570 1.90699 1.49627 1.15854 1.84862 1.21986 1.02873 0.99680 0.91995 0.85917 1.22674 0.88539 1.02465 0.99959 1.21150 1.02252 1.04088 0.92756 1.22772 1.02003 1.00983 0.90923 1.22596 1.02065 0.90258 1.00033 0.92264 0.91466 0.92479 0.91274 0.90037 0.91766 0.92056 0.92078 0.90873 0.91293 0.95831 0.83299 0.89674 0.94001 0.77461 0.91888 0.76541 0.87464 0.87962 0.88566 0.88258 0.88481 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.48 37.16 0.35 -0.78 16 2 C 0.14 1.03 2.57 -67.93 -0.17 0.86 16 3 H 0.09 0.83 7.58 -51.93 -0.39 0.43 16 4 C -0.13 -0.82 4.75 -26.73 -0.13 -0.94 16 5 C -0.12 -0.91 5.10 -26.73 -0.14 -1.05 16 6 C -0.12 -1.15 5.47 -26.73 -0.15 -1.30 16 7 C 0.06 0.72 5.68 -3.83 -0.02 0.70 16 8 N -0.67 -11.03 6.13 -115.06 -0.70 -11.74 16 9 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 10 C 0.44 10.59 7.82 -10.99 -0.09 10.50 16 11 O -0.58 -16.09 15.78 5.54 0.09 -16.01 16 12 N -0.56 -14.49 5.29 -10.96 -0.06 -14.55 16 13 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 14 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 17 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 N -0.72 -4.97 4.53 -53.81 -0.24 -5.21 16 22 C 0.54 4.96 7.58 -10.98 -0.08 4.88 16 23 O -0.53 -6.89 15.91 5.55 0.09 -6.80 16 24 C -0.14 -1.02 6.19 -91.78 -0.57 -1.59 16 25 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 26 C -0.10 -0.66 10.23 -26.74 -0.27 -0.93 16 27 C -0.20 -1.54 5.05 -154.52 -0.78 -2.33 16 28 C -0.13 -0.77 10.53 -26.73 -0.28 -1.05 16 29 C -0.11 -0.86 10.16 -26.73 -0.27 -1.13 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.46 7.75 -51.93 -0.40 0.06 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.35 5.84 8.43 -39.29 -0.33 5.51 16 42 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.40 1.88 8.60 -40.82 -0.35 1.53 16 47 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 433.97 15.07 6.54 6.54 Total: -1.00 -33.78 433.97 -10.80 -44.58 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -9.34 Total: 12.38 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.87 Total: -1.37 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.28 Total: -55.43 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: 0.18 Total: -22.81 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.54 Total: 6.54 kcal Total: -33.78 -10.80 -44.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175441704.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.179 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds