Wall clock time and date at job start Tue Mar 31 2020 19:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 5 5 C 1.52999 * 109.47283 * 175.00170 * 4 2 1 6 6 C 1.53001 * 109.46946 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46946 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.47454 * 180.02562 * 7 6 5 9 9 C 1.46896 * 111.00497 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47217 * 179.97438 * 9 8 7 11 11 O 1.21297 * 120.00094 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99986 * 179.97438 * 10 9 8 13 13 C 1.37104 * 120.00109 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99441 * 359.97438 * 13 12 10 15 15 C 1.38953 * 119.99791 * 179.97438 * 13 12 10 16 16 N 1.31403 * 120.00072 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99509 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47214 * 90.00058 * 17 15 13 19 19 H 1.48501 * 109.47047 * 209.99740 * 17 15 13 20 20 H 1.48498 * 109.47410 * 329.99763 * 17 15 13 21 21 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 22 22 C 1.34777 * 120.00199 * 275.00460 * 21 2 1 23 23 O 1.21283 * 119.99750 * 359.97438 * 22 21 2 24 24 C 1.50702 * 119.99928 * 180.27479 * 22 21 2 25 25 H 1.09007 * 115.54675 * 325.44025 * 24 22 21 26 26 C 1.53000 * 117.49991 * 111.11533 * 24 22 21 27 27 C 1.52990 * 59.99814 * 107.48755 * 26 24 22 28 28 C 1.52993 * 138.58594 * 130.89520 * 27 26 24 29 29 C 1.53000 * 138.58789 * 229.10650 * 27 26 24 30 30 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 31 31 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 32 32 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46798 * 294.99777 * 4 2 1 34 34 H 1.08995 * 109.47322 * 54.99237 * 4 2 1 35 35 H 1.08997 * 109.47141 * 299.99510 * 5 4 2 36 36 H 1.08998 * 109.47192 * 59.99829 * 5 4 2 37 37 H 1.08997 * 109.47150 * 299.99932 * 6 5 4 38 38 H 1.08998 * 109.46966 * 60.00118 * 6 5 4 39 39 H 1.09006 * 109.46883 * 299.99982 * 7 6 5 40 40 H 1.08995 * 109.47704 * 59.99728 * 7 6 5 41 41 H 1.00903 * 110.99932 * 303.95342 * 8 7 6 42 42 H 1.09004 * 109.46909 * 299.99507 * 9 8 7 43 43 H 1.09002 * 109.46997 * 59.99300 * 9 8 7 44 44 H 0.97003 * 119.99837 * 359.97438 * 12 10 9 45 45 H 0.97005 * 119.99787 * 180.02562 * 16 15 13 46 46 H 0.97000 * 119.99484 * 94.99557 * 21 2 1 47 47 H 1.09001 * 117.49400 * 214.98273 * 26 24 22 48 48 H 1.09005 * 117.49706 * 359.97438 * 26 24 22 49 49 H 1.09006 * 117.49748 * 238.37310 * 28 27 26 50 50 H 1.08993 * 117.50166 * 23.40071 * 28 27 26 51 51 H 1.09000 * 117.49118 * 336.59854 * 29 27 26 52 52 H 1.08991 * 117.49709 * 121.59392 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0748 -1.3349 -2.5627 7 6 5.5996 -1.2264 -2.6274 8 7 6.0893 -1.9188 -3.8268 9 6 7.5528 -1.8348 -3.9227 10 6 8.0172 -2.5551 -5.1622 11 8 7.2085 -3.0859 -5.8941 12 7 9.3310 -2.6087 -5.4581 13 6 9.7535 -3.2636 -6.5861 14 1 9.0335 -3.7369 -7.2373 15 6 11.1080 -3.3183 -6.8914 16 7 11.9838 -2.7420 -6.0993 17 14 11.6836 -4.2112 -8.4278 18 1 11.7187 -3.2612 -9.5686 19 1 13.0438 -4.7617 -8.2001 20 1 10.7459 -5.3206 -8.7363 21 7 2.0183 -0.6906 1.1962 22 6 2.1470 -0.0182 2.3572 23 8 1.8589 1.1586 2.4115 24 6 2.6553 -0.7271 3.5861 25 1 2.3591 -1.7718 3.6824 26 6 4.0392 -0.3342 4.1067 27 6 2.7847 0.0924 4.8715 28 6 2.2519 0.0695 6.3054 29 6 2.1926 1.3614 5.4878 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1369 35 1 3.8532 0.4370 -1.3573 36 1 3.9994 -1.0728 -0.4260 37 1 3.7865 -2.3851 -2.5186 38 1 3.6402 -0.8757 -3.4505 39 1 5.8875 -0.1760 -2.6717 40 1 6.0346 -1.6853 -1.7396 41 1 5.7803 -2.8792 -3.8415 42 1 7.8539 -0.7885 -3.9758 43 1 8.0016 -2.2979 -3.0440 44 1 9.9775 -2.1833 -4.8734 45 1 12.9294 -2.7800 -6.3126 46 1 2.2490 -1.6317 1.1526 47 1 4.6535 -1.1202 4.5458 48 1 4.5823 0.4368 3.5601 49 1 1.3137 -0.4556 6.4854 50 1 2.9821 0.0180 7.1130 51 1 2.8840 2.1597 5.7574 52 1 1.2158 1.6863 5.1296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175441704.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:40 Heat of formation + Delta-G solvation = -59.108223 kcal Electronic energy + Delta-G solvation = -27631.772790 eV Core-core repulsion = 23631.277547 eV Total energy + Delta-G solvation = -4000.495243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.12588 -40.16563 -38.87810 -37.83790 -36.87427 -35.90977 -34.34424 -33.62695 -33.25506 -31.88536 -29.68317 -27.64576 -25.97081 -25.38422 -23.62246 -23.29586 -22.09828 -21.84874 -21.47505 -21.02335 -20.07172 -19.90133 -18.18833 -17.81227 -17.29381 -17.12229 -16.52081 -16.21075 -16.00448 -15.97882 -15.87639 -15.46175 -15.38870 -15.17307 -15.07808 -14.78460 -14.34973 -13.92842 -13.64057 -13.51665 -13.47846 -13.34290 -13.14514 -12.94204 -12.79496 -12.67029 -12.42567 -12.39506 -12.36869 -12.12660 -12.10391 -11.86962 -11.55650 -11.51425 -11.41814 -11.18827 -11.09498 -10.94487 -10.69833 -10.35798 -10.05892 -10.02447 -9.31516 -8.47132 -5.96231 1.38315 1.42166 1.48942 1.55039 2.04053 2.09405 2.29275 2.74414 2.87334 2.92493 3.20049 3.33218 3.49903 3.72967 3.82128 3.87004 4.00480 4.07080 4.11950 4.22943 4.30393 4.36128 4.44558 4.48673 4.53266 4.55526 4.60860 4.62425 4.73389 4.74286 4.77054 4.77845 4.81281 4.85259 4.94071 4.98324 5.00184 5.02257 5.09623 5.19293 5.25333 5.28581 5.39568 5.40419 5.49712 5.60273 5.90224 6.12059 6.43739 6.59382 6.59757 7.11746 7.29305 7.55130 8.10353 8.70235 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017967 B = 0.001442 C = 0.001355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.014077 B =19413.578502 C =20652.654090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 H 0.064 0.936 4 C -0.117 4.117 5 C -0.109 4.109 6 C -0.109 4.109 7 C 0.059 3.941 8 N -0.687 5.687 9 C 0.065 3.935 10 C 0.436 3.564 11 O -0.624 6.624 12 N -0.573 5.573 13 C -0.337 4.337 14 H 0.079 0.921 15 C -0.012 4.012 16 N -0.920 5.920 17 Si 0.994 3.006 18 H -0.271 1.271 19 H -0.270 1.270 20 H -0.272 1.272 21 N -0.708 5.708 22 C 0.536 3.464 23 O -0.580 6.580 24 C -0.144 4.144 25 H 0.149 0.851 26 C -0.092 4.092 27 C -0.228 4.228 28 C -0.109 4.109 29 C -0.132 4.132 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.344 0.656 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.414 0.586 47 H 0.130 0.870 48 H 0.089 0.911 49 H 0.105 0.895 50 H 0.115 0.885 51 H 0.097 0.903 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.730 3.854 24.788 31.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.155 4.155 5 C -0.147 4.147 6 C -0.147 4.147 7 C -0.069 4.069 8 N -0.319 5.319 9 C -0.068 4.068 10 C 0.224 3.776 11 O -0.510 6.510 12 N -0.210 5.210 13 C -0.466 4.466 14 H 0.097 0.903 15 C -0.212 4.212 16 N -0.561 5.561 17 Si 0.818 3.182 18 H -0.197 1.197 19 H -0.195 1.195 20 H -0.197 1.197 21 N -0.360 5.360 22 C 0.323 3.677 23 O -0.460 6.460 24 C -0.164 4.164 25 H 0.167 0.833 26 C -0.129 4.129 27 C -0.228 4.228 28 C -0.145 4.145 29 C -0.169 4.169 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.163 0.837 42 H 0.119 0.881 43 H 0.084 0.916 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.251 0.749 47 H 0.148 0.852 48 H 0.107 0.893 49 H 0.123 0.877 50 H 0.133 0.867 51 H 0.115 0.885 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.368 4.888 23.889 31.772 hybrid contribution 1.101 -0.912 -0.061 1.431 sum -19.266 3.977 23.828 30.900 Atomic orbital electron populations 1.22123 0.94870 1.02736 1.01927 1.20953 0.94141 0.96709 0.84341 0.91784 1.21836 0.95313 1.01891 0.96465 1.21463 0.95445 1.00391 0.97405 1.21480 0.93407 1.01287 0.98501 1.22076 0.96265 0.98983 0.89583 1.60079 1.08540 1.21800 1.41508 1.21527 0.89844 1.01186 0.94212 1.20900 0.82362 0.84863 0.89490 1.90484 1.54192 1.52115 1.54233 1.41940 1.06311 1.49151 1.23587 1.19694 0.92430 1.32101 1.02391 0.90289 1.26051 0.95116 0.98054 1.01979 1.69672 1.02970 1.44439 1.38994 0.84911 0.77632 0.78273 0.77413 1.19693 1.19458 1.19698 1.45983 1.66524 1.14692 1.08820 1.20132 0.76576 0.86348 0.84616 1.90681 1.51760 1.17906 1.85622 1.22070 1.03159 1.00527 0.90673 0.83324 1.22728 0.88299 1.02562 0.99299 1.21419 1.03276 1.04173 0.93950 1.22841 1.02506 0.98876 0.90286 1.22571 1.01428 0.91136 1.01767 0.94368 0.90682 0.91134 0.89686 0.89751 0.92654 0.91318 0.91417 0.91998 0.91248 0.94375 0.83713 0.88148 0.91607 0.76968 0.91267 0.74907 0.85162 0.89292 0.87715 0.86691 0.88450 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.48 71.98 0.68 -1.40 16 2 C 0.14 1.98 2.57 44.99 0.12 2.10 16 3 H 0.06 1.23 7.58 -2.39 -0.02 1.21 16 4 C -0.12 -1.29 4.75 30.59 0.15 -1.14 16 5 C -0.11 -1.49 5.10 30.59 0.16 -1.34 16 6 C -0.11 -1.94 5.47 30.59 0.17 -1.77 16 7 C 0.06 1.34 5.68 86.30 0.49 1.83 16 8 N -0.69 -21.70 6.13 -517.95 -3.17 -24.87 16 9 C 0.06 2.25 6.17 85.56 0.53 2.78 16 10 C 0.44 21.05 7.82 87.66 0.69 21.73 16 11 O -0.62 -34.98 15.78 -3.08 -0.05 -35.03 16 12 N -0.57 -29.69 5.29 -306.98 -1.62 -31.32 16 13 C -0.34 -19.28 9.68 84.04 0.81 -18.46 16 14 H 0.08 4.82 7.16 -2.91 -0.02 4.79 16 15 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 16 N -0.92 -49.71 13.05 21.66 0.28 -49.42 16 17 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 N -0.71 -8.87 4.53 -442.54 -2.00 -10.87 16 22 C 0.54 9.64 7.58 87.66 0.66 10.30 16 23 O -0.58 -15.60 15.91 -3.04 -0.05 -15.65 16 24 C -0.14 -1.83 6.19 -11.54 -0.07 -1.90 16 25 H 0.15 1.06 8.14 -2.38 -0.02 1.05 16 26 C -0.09 -1.09 10.23 30.59 0.31 -0.78 16 27 C -0.23 -3.29 5.05 -52.19 -0.26 -3.56 16 28 C -0.11 -1.14 10.53 30.59 0.32 -0.82 16 29 C -0.13 -2.06 10.16 30.60 0.31 -1.75 16 30 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.86 7.75 -2.39 -0.02 0.84 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.34 11.23 8.43 -89.69 -0.76 10.47 16 42 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 44 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 45 H 0.28 14.03 8.31 -92.70 -0.77 13.26 16 46 H 0.41 2.89 8.60 -92.71 -0.80 2.09 16 47 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 49 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 50 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -74.51 433.97 -0.42 -74.93 By element: Atomic # 1 Polarization: 43.01 SS G_CDS: -1.36 Total: 41.65 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 5.53 Total: 5.63 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -6.52 Total: -116.48 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -0.10 Total: -50.68 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -74.51 -0.42 -74.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175441704.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.819 kcal (2) G-P(sol) polarization free energy of solvation -74.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds