Wall clock time and date at job start Tue Mar 31 2020 19:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 C 1.53004 * 109.46807 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.46906 * 180.02562 * 6 5 4 8 8 N 1.46896 * 109.47188 * 180.02562 * 7 6 5 9 9 C 1.46901 * 111.00353 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47317 * 179.97438 * 9 8 7 11 11 O 1.21298 * 119.99643 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99876 * 180.02562 * 10 9 8 13 13 C 1.37101 * 120.00023 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99905 * 359.97438 * 13 12 10 15 15 C 1.38947 * 120.00086 * 180.02562 * 13 12 10 16 16 N 1.31404 * 120.00059 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99730 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47491 * 59.99819 * 17 15 13 19 19 H 1.48500 * 109.46998 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47215 * 299.99360 * 17 15 13 21 21 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 22 22 C 1.34777 * 119.99828 * 84.72116 * 21 2 1 23 23 O 1.21283 * 120.00222 * 0.28168 * 22 21 2 24 24 C 1.50703 * 120.00290 * 180.27728 * 22 21 2 25 25 H 1.08999 * 115.54699 * 325.58852 * 24 22 21 26 26 C 1.53001 * 117.49908 * 111.25493 * 24 22 21 27 27 C 1.52985 * 117.50172 * 179.91383 * 24 22 21 28 28 C 1.52996 * 138.58971 * 121.61677 * 27 24 22 29 29 C 1.52992 * 59.99936 * 229.10833 * 28 27 24 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 32 32 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 33 33 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 34 34 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 35 35 H 1.08988 * 109.47304 * 300.00405 * 5 4 2 36 36 H 1.08998 * 109.46869 * 60.00439 * 5 4 2 37 37 H 1.09002 * 109.47337 * 300.00120 * 6 5 4 38 38 H 1.08998 * 109.47048 * 60.00548 * 6 5 4 39 39 H 1.09002 * 109.46788 * 299.99926 * 7 6 5 40 40 H 1.08998 * 109.47252 * 60.00143 * 7 6 5 41 41 H 1.00903 * 111.00326 * 303.95312 * 8 7 6 42 42 H 1.08998 * 109.47062 * 299.99658 * 9 8 7 43 43 H 1.08998 * 109.47093 * 59.99802 * 9 8 7 44 44 H 0.96996 * 120.00263 * 359.97438 * 12 10 9 45 45 H 0.96997 * 119.99936 * 180.02562 * 16 15 13 46 46 H 0.97001 * 120.00384 * 265.00562 * 21 2 1 47 47 H 1.09000 * 117.49803 * 214.98054 * 26 24 22 48 48 H 1.08997 * 117.49835 * 0.02562 * 26 24 22 49 49 H 1.09000 * 117.49867 * 336.60294 * 28 27 24 50 50 H 1.09004 * 117.49835 * 121.61340 * 28 27 24 51 51 H 1.09000 * 117.49849 * 252.50828 * 29 28 27 52 52 H 1.09007 * 117.52204 * 107.48090 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 6 4.0748 -1.3341 2.5632 7 6 5.5996 -1.2256 2.6279 8 7 6.0893 -1.9181 3.8273 9 6 7.5529 -1.8351 3.9225 10 6 8.0172 -2.5545 5.1626 11 8 7.2084 -3.0838 5.8954 12 7 9.3311 -2.6088 5.4580 13 6 9.7536 -3.2636 6.5860 14 1 9.0335 -3.7357 7.2381 15 6 11.1081 -3.3192 6.8908 16 7 11.9841 -2.7445 6.0978 17 14 11.6836 -4.2108 8.4281 18 1 11.2732 -5.6362 8.3565 19 1 13.1631 -4.1264 8.5246 20 1 11.0722 -3.5791 9.6249 21 7 2.0184 -0.6906 -1.1962 22 6 2.1417 -0.0196 -2.3585 23 8 1.8533 1.1572 -2.4129 24 6 2.6382 -0.7314 -3.5905 25 1 3.3842 -1.5069 -3.4169 26 6 1.6399 -0.9537 -4.7285 27 6 2.7543 0.0847 -4.8793 28 6 3.8278 0.4762 -5.8967 29 6 2.9112 1.5468 -5.3014 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6054 -0.2618 2.1369 34 1 1.7517 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4259 36 1 3.8532 0.4369 1.3573 37 1 3.6402 -0.8742 3.4508 38 1 3.7865 -2.3844 2.5200 39 1 6.0345 -1.6853 1.7404 40 1 5.8876 -0.1753 2.6713 41 1 5.6513 -1.5532 4.6598 42 1 8.0010 -2.2990 3.0438 43 1 7.8548 -0.7892 3.9751 44 1 9.9778 -2.1852 4.8723 45 1 12.9297 -2.7835 6.3104 46 1 2.2490 -1.6318 -1.1527 47 1 1.7294 -1.8752 -5.3037 48 1 0.6242 -0.5847 -4.5862 49 1 4.8658 0.4607 -5.5644 50 1 3.6627 0.1937 -6.9365 51 1 2.1431 1.9688 -5.9495 52 1 3.3458 2.2359 -4.5771 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175441706.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:47 Heat of formation + Delta-G solvation = -36.389013 kcal Electronic energy + Delta-G solvation = -27599.559610 eV Core-core repulsion = 23600.049545 eV Total energy + Delta-G solvation = -3999.510064 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.45954 -38.39188 -38.22045 -36.98560 -35.81229 -33.97712 -33.41645 -32.98137 -31.29379 -31.09825 -28.65531 -26.20704 -24.96403 -24.13988 -22.76845 -22.64758 -21.31301 -21.23271 -20.80084 -19.50556 -19.18684 -17.86851 -17.54849 -16.67222 -16.12637 -15.84207 -15.51209 -15.37837 -15.16912 -14.89966 -14.61774 -14.47738 -14.40148 -14.03304 -13.73553 -13.45362 -13.24673 -13.16797 -12.91230 -12.54250 -12.33746 -12.17367 -12.11971 -11.85721 -11.68104 -11.59182 -11.49690 -11.34350 -11.12049 -11.01332 -10.81287 -10.67399 -10.64227 -10.55376 -10.43664 -10.41831 -10.20489 -10.01128 -9.49314 -9.39756 -8.44590 -8.03359 -7.94815 -6.40874 -3.81817 2.15839 2.68357 3.20716 3.26210 3.28588 3.30715 3.40717 3.85378 3.92066 4.05467 4.22135 4.30551 4.38759 4.53550 4.64982 4.67742 4.69788 4.98448 5.00420 5.06408 5.11279 5.14476 5.20291 5.22935 5.24795 5.25027 5.27052 5.31361 5.37834 5.46765 5.50775 5.54043 5.55801 5.63821 5.69622 5.76992 5.79755 5.81851 5.84594 5.91399 6.00952 6.13860 6.20628 6.24017 6.30489 7.18021 7.25848 7.55662 7.69861 7.93087 8.07108 8.62346 9.18547 9.55277 10.06949 10.76839 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016818 B = 0.001444 C = 0.001357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.454584 B =19390.620205 C =20635.609549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.117 4.117 7 C 0.059 3.941 8 N -0.671 5.671 9 C 0.051 3.949 10 C 0.441 3.559 11 O -0.584 6.584 12 N -0.564 5.564 13 C -0.301 4.301 14 H 0.102 0.898 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.274 1.274 21 N -0.721 5.721 22 C 0.542 3.458 23 O -0.535 6.535 24 C -0.144 4.144 25 H 0.124 0.876 26 C -0.100 4.100 27 C -0.202 4.202 28 C -0.130 4.130 29 C -0.113 4.113 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.024 0.976 41 H 0.348 0.652 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.401 0.599 47 H 0.106 0.894 48 H 0.100 0.900 49 H 0.098 0.902 50 H 0.099 0.901 51 H 0.096 0.904 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.438 6.463 -23.059 31.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.071 4.071 8 N -0.303 5.303 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.468 6.468 12 N -0.200 5.200 13 C -0.430 4.430 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 N -0.373 5.373 22 C 0.328 3.672 23 O -0.411 6.411 24 C -0.165 4.165 25 H 0.142 0.858 26 C -0.137 4.137 27 C -0.202 4.202 28 C -0.166 4.166 29 C -0.150 4.150 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.167 0.833 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.235 0.765 47 H 0.125 0.875 48 H 0.118 0.882 49 H 0.116 0.884 50 H 0.117 0.883 51 H 0.114 0.886 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.960 6.362 -22.850 31.653 hybrid contribution 1.139 0.199 0.748 1.377 sum -19.821 6.561 -22.102 30.404 Atomic orbital electron populations 1.22173 0.95308 1.02145 1.02530 1.21021 0.93862 0.97635 0.83808 0.89442 1.21918 0.96358 1.01206 0.96972 1.21549 0.94606 1.00955 0.98386 1.21555 0.94925 1.01474 0.97507 1.21972 0.95039 0.95803 0.94262 1.60075 1.04837 1.60052 1.05345 1.21666 0.89037 0.98684 0.98827 1.19831 0.83401 0.86109 0.88055 1.90517 1.53404 1.50525 1.52361 1.41859 1.05441 1.48935 1.23814 1.19667 0.92003 1.30352 1.01008 0.87969 1.25260 0.95603 0.97801 0.99258 1.69602 1.02554 1.44244 1.37952 0.85909 0.77225 0.79801 0.81219 1.19885 1.20980 1.19921 1.46059 1.67613 1.14141 1.09438 1.19682 0.77122 0.86779 0.83597 1.90697 1.49669 1.15816 1.84924 1.21993 1.04043 1.02398 0.88064 0.85768 1.22662 0.94284 0.99011 0.97784 1.21156 1.02877 0.98433 0.97764 1.22781 0.95198 1.01842 0.96816 1.22599 1.01248 0.89504 1.01612 0.92416 0.91529 0.92259 0.90162 0.91118 0.91872 0.92013 0.92001 0.90923 0.91348 0.95783 0.83262 0.89697 0.93982 0.77458 0.91829 0.76464 0.87533 0.88161 0.88409 0.88278 0.88557 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.48 37.16 0.35 -0.77 16 2 C 0.14 1.03 2.57 -67.93 -0.17 0.86 16 3 H 0.09 0.82 7.58 -51.93 -0.39 0.43 16 4 C -0.13 -0.82 4.75 -26.73 -0.13 -0.95 16 5 C -0.12 -0.92 5.10 -26.73 -0.14 -1.06 16 6 C -0.12 -1.16 5.47 -26.73 -0.15 -1.31 16 7 C 0.06 0.73 5.69 -3.83 -0.02 0.70 16 8 N -0.67 -11.08 6.13 -115.06 -0.70 -11.78 16 9 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 10 C 0.44 10.61 7.82 -10.99 -0.09 10.53 16 11 O -0.58 -16.12 15.78 5.54 0.09 -16.03 16 12 N -0.56 -14.51 5.29 -10.96 -0.06 -14.57 16 13 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 14 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 17 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 N -0.72 -5.01 4.53 -53.81 -0.24 -5.26 16 22 C 0.54 5.00 7.58 -10.98 -0.08 4.91 16 23 O -0.53 -6.91 15.91 5.55 0.09 -6.82 16 24 C -0.14 -1.03 6.19 -91.78 -0.57 -1.60 16 25 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 26 C -0.10 -0.61 10.24 -26.70 -0.27 -0.89 16 27 C -0.20 -1.55 5.06 -154.49 -0.78 -2.34 16 28 C -0.13 -0.81 10.53 -26.74 -0.28 -1.09 16 29 C -0.11 -0.88 10.16 -26.74 -0.27 -1.15 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.49 7.75 -51.94 -0.40 0.09 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.35 5.91 8.43 -39.29 -0.33 5.58 16 42 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.40 1.93 8.60 -40.82 -0.35 1.58 16 47 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 52 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 433.97 15.07 6.54 6.54 Total: -1.00 -33.78 433.97 -10.80 -44.59 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -9.34 Total: 12.56 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -2.87 Total: -1.38 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.28 Total: -55.59 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: 0.18 Total: -22.86 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.54 Total: 6.54 kcal Total: -33.78 -10.80 -44.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175441706.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.199 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds