Wall clock time and date at job start Tue Mar 31 2020 20:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46675 * 2 1 4 4 C 1.53005 * 109.46943 * 119.99516 * 2 1 3 5 5 C 1.50700 * 109.47165 * 295.00249 * 4 2 1 6 6 O 1.21277 * 120.00106 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99790 * 180.02562 * 5 4 2 8 8 C 1.47020 * 125.65213 * 0.03521 * 7 5 4 9 9 C 1.54321 * 107.27324 * 181.02614 * 8 7 5 10 10 C 1.55153 * 102.94475 * 22.19297 * 9 8 7 11 11 H 1.09000 * 111.00255 * 82.56972 * 10 9 8 12 12 N 1.46895 * 111.03912 * 206.40835 * 10 9 8 13 13 C 1.46901 * 111.00232 * 300.53923 * 12 10 9 14 14 C 1.46906 * 110.99988 * 176.58453 * 12 10 9 15 15 C 1.50696 * 109.47127 * 189.99897 * 14 12 10 16 16 O 1.21290 * 119.99888 * 0.02562 * 15 14 12 17 17 N 1.34774 * 120.00105 * 179.97438 * 15 14 12 18 18 C 1.37094 * 120.00116 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00436 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00003 * 180.02562 * 18 17 15 21 21 N 1.31419 * 119.99873 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00024 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47122 * 59.99976 * 22 20 18 24 24 H 1.48502 * 109.46974 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47308 * 299.99498 * 22 20 18 26 26 C 1.47427 * 125.65005 * 179.97438 * 7 5 4 27 27 C 1.53001 * 109.47268 * 239.99641 * 2 1 3 28 28 C 1.52998 * 117.49943 * 128.62154 * 27 2 1 29 29 C 1.52996 * 117.49678 * 59.99976 * 27 2 1 30 30 H 1.09000 * 109.47093 * 60.00615 * 1 2 3 31 31 H 1.09003 * 109.47249 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47102 * 300.00145 * 1 2 3 33 33 H 1.08992 * 109.46894 * 174.99932 * 4 2 1 34 34 H 1.09000 * 109.46957 * 55.00255 * 4 2 1 35 35 H 1.08995 * 109.88557 * 300.44730 * 8 7 5 36 36 H 1.09004 * 109.88187 * 61.45524 * 8 7 5 37 37 H 1.09004 * 110.72021 * 263.83175 * 9 8 7 38 38 H 1.09005 * 110.71769 * 140.56086 * 9 8 7 39 39 H 1.08993 * 109.47070 * 65.77678 * 13 12 10 40 40 H 1.08992 * 109.47022 * 185.78636 * 13 12 10 41 41 H 1.09003 * 109.46531 * 305.78485 * 13 12 10 42 42 H 1.09002 * 109.46564 * 310.00192 * 14 12 10 43 43 H 1.08994 * 109.46947 * 69.99730 * 14 12 10 44 44 H 0.96999 * 119.99747 * 0.02562 * 17 15 14 45 45 H 0.96998 * 119.99940 * 180.02562 * 21 20 18 46 46 H 1.09003 * 110.36271 * 37.06612 * 26 7 5 47 47 H 1.09000 * 110.36733 * 274.74573 * 26 7 5 48 48 H 1.09005 * 115.54767 * 274.33382 * 27 2 1 49 49 H 1.08995 * 117.49595 * 0.02562 * 28 27 2 50 50 H 1.08995 * 117.49659 * 145.02115 * 28 27 2 51 51 H 1.09004 * 117.49488 * 214.97949 * 29 27 2 52 52 H 1.09000 * 117.50044 * 359.97342 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6413 0.0572 2.4766 6 8 1.0117 1.0875 2.3632 7 7 1.9853 -0.3912 3.7002 8 6 2.7456 -1.6178 3.9808 9 6 2.8763 -1.7352 5.5140 10 6 1.6972 -0.8692 6.0306 11 1 0.7655 -1.4349 6.0257 12 7 1.9804 -0.3382 7.3707 13 6 2.2089 -1.4264 8.3307 14 6 0.8997 0.5468 7.8255 15 6 1.3299 1.2607 9.0810 16 8 2.4288 1.0531 9.5504 17 7 0.4939 2.1307 9.6816 18 6 0.8855 2.7805 10.8235 19 1 1.8636 2.5951 11.2420 20 6 0.0234 3.6771 11.4430 21 7 -1.1671 3.9024 10.9341 22 14 0.5566 4.5620 12.9992 23 1 1.7717 5.3683 12.7186 24 1 -0.5357 5.4571 13.4587 25 1 0.8579 3.5646 14.0574 26 6 1.6625 0.2678 4.9789 27 6 2.0401 -0.7213 -1.2492 28 6 3.0742 0.0050 -2.1116 29 6 1.6358 -0.1497 -2.6095 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7994 1.2057 34 1 1.6054 -1.7197 1.2953 35 1 2.2123 -2.4829 3.5869 36 1 3.7342 -1.5534 3.5261 37 1 3.8298 -1.3294 5.8520 38 1 2.7623 -2.7715 5.8325 39 1 3.1190 -1.9627 8.0621 40 1 2.3143 -1.0107 9.3327 41 1 1.3628 -2.1132 8.3094 42 1 0.6785 1.2789 7.0488 43 1 0.0079 -0.0450 8.0315 44 1 -0.3848 2.2970 9.3060 45 1 -1.7688 4.5285 11.3664 46 1 0.6690 0.7141 4.9354 47 1 2.4098 1.0256 5.2143 48 1 2.1267 -1.8046 -1.1641 49 1 3.3915 0.9966 -1.7889 50 1 3.8416 -0.6003 -2.5940 51 1 1.4570 -0.8568 -3.4195 52 1 1.0061 0.7400 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194295029.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:55 Heat of formation + Delta-G solvation = -42.401044 kcal Electronic energy + Delta-G solvation = -29294.615365 eV Core-core repulsion = 25294.844599 eV Total energy + Delta-G solvation = -3999.770765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.44438 -39.02314 -38.22378 -37.49456 -35.47072 -33.82055 -33.42389 -31.29206 -31.04487 -29.40593 -27.87179 -27.68120 -24.98644 -24.47862 -23.33591 -22.80930 -22.59189 -20.33664 -20.11345 -19.35268 -19.00762 -17.83457 -17.31687 -16.87241 -16.11196 -15.73795 -15.67256 -15.36362 -14.67197 -14.62198 -14.52704 -14.27568 -13.95536 -13.74787 -13.65430 -13.39423 -13.27537 -13.06155 -12.86400 -12.65411 -12.21821 -12.10734 -11.92452 -11.83973 -11.63651 -11.52192 -11.39605 -11.36431 -11.25825 -11.05781 -11.03236 -10.94609 -10.76749 -10.62021 -10.43082 -10.23321 -10.20113 -9.81320 -9.45626 -8.76749 -8.46603 -7.98816 -7.90267 -6.40190 -3.81156 2.51823 2.75804 3.21001 3.26878 3.30985 3.46023 3.89614 3.93771 4.11978 4.23189 4.33611 4.44713 4.50481 4.58553 4.65170 4.77515 4.88466 4.96006 5.06521 5.08825 5.14209 5.18842 5.24335 5.28334 5.30920 5.35393 5.38702 5.55208 5.57115 5.58574 5.64316 5.66116 5.68745 5.79064 5.79334 5.87501 5.90482 5.92189 5.94077 6.05046 6.11493 6.13223 6.24775 6.28898 6.49480 7.18984 7.31370 7.39715 7.56289 8.05263 8.07142 8.62778 9.19087 9.55546 10.07094 10.77400 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018703 B = 0.001967 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.696387 B =14229.813641 C =15249.604190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.045 4.045 3 H 0.079 0.921 4 C -0.128 4.128 5 C 0.527 3.473 6 O -0.535 6.535 7 N -0.619 5.619 8 C 0.103 3.897 9 C -0.123 4.123 10 C 0.069 3.931 11 H 0.054 0.946 12 N -0.507 5.507 13 C 0.025 3.975 14 C 0.042 3.958 15 C 0.444 3.556 16 O -0.578 6.578 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.112 3.888 27 C -0.149 4.149 28 C -0.182 4.182 29 C -0.178 4.178 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.062 0.938 40 H 0.096 0.904 41 H 0.014 0.986 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.634 -14.353 -22.902 27.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.064 4.064 3 H 0.097 0.903 4 C -0.168 4.168 5 C 0.316 3.684 6 O -0.412 6.412 7 N -0.354 5.354 8 C -0.020 4.020 9 C -0.161 4.161 10 C -0.041 4.041 11 H 0.072 0.928 12 N -0.231 5.231 13 C -0.123 4.123 14 C -0.089 4.089 15 C 0.229 3.771 16 O -0.462 6.462 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.010 4.010 27 C -0.167 4.167 28 C -0.219 4.219 29 C -0.215 4.215 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.033 0.967 42 H 0.107 0.893 43 H 0.066 0.934 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.121 0.879 49 H 0.113 0.887 50 H 0.110 0.890 51 H 0.110 0.890 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.283 -13.496 -22.678 26.914 hybrid contribution -1.071 -0.020 0.588 1.222 sum 4.212 -13.516 -22.090 26.237 Atomic orbital electron populations 1.21929 0.94312 1.01478 1.03063 1.20475 0.96498 0.99003 0.90421 0.90290 1.21684 1.02877 1.00027 0.92204 1.20365 0.79144 0.85613 0.83262 1.90697 1.40080 1.24610 1.85814 1.48489 1.55622 1.25469 1.05867 1.22052 0.96124 0.87040 0.96829 1.22697 1.00169 1.00463 0.92792 1.22789 0.97042 0.94613 0.89631 0.92777 1.61595 1.42161 1.18942 1.00430 1.22509 0.99041 0.92046 0.98688 1.21916 0.92306 0.96564 0.98123 1.19669 0.86584 0.84226 0.86572 1.90487 1.21855 1.67038 1.66845 1.41861 1.16252 1.37426 1.24424 1.19643 1.02167 1.19846 1.01259 0.87943 1.25270 0.95235 0.97749 0.99695 1.69608 1.07447 1.36286 1.40894 0.85915 0.78018 0.79095 0.81163 1.19891 1.21000 1.19939 1.22258 1.02214 0.95382 0.81183 1.22349 1.03720 0.99041 0.91625 1.23038 0.92502 1.02155 1.04194 1.22924 0.98106 1.03397 0.97065 0.92834 0.93332 0.90573 0.88883 0.89001 0.91438 0.91109 0.89027 0.90060 0.91881 0.88557 0.96738 0.89323 0.93351 0.77476 0.91811 0.90396 0.89920 0.87856 0.88733 0.88964 0.88955 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.77 37.16 0.33 -1.08 16 2 C -0.05 -0.39 2.19 -90.61 -0.20 -0.59 16 3 H 0.08 0.81 7.71 -51.93 -0.40 0.41 16 4 C -0.13 -1.03 4.35 -27.88 -0.12 -1.15 16 5 C 0.53 6.27 7.57 -10.99 -0.08 6.19 16 6 O -0.54 -8.40 14.22 5.56 0.08 -8.32 16 7 N -0.62 -6.93 3.33 -170.51 -0.57 -7.50 16 8 C 0.10 0.82 6.49 -3.07 -0.02 0.80 16 9 C -0.12 -1.14 5.33 -24.90 -0.13 -1.27 16 10 C 0.07 0.85 2.70 -65.56 -0.18 0.67 16 11 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 12 N -0.51 -8.04 4.40 -233.75 -1.03 -9.07 16 13 C 0.02 0.38 8.90 60.07 0.53 0.91 16 14 C 0.04 0.75 5.34 -4.97 -0.03 0.72 16 15 C 0.44 10.39 7.42 -10.99 -0.08 10.31 16 16 O -0.58 -15.29 13.97 5.55 0.08 -15.21 16 17 N -0.56 -14.29 5.29 -10.97 -0.06 -14.35 16 18 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 21 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 22 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.11 1.48 5.46 -2.52 -0.01 1.47 16 27 C -0.15 -1.02 5.15 -90.62 -0.47 -1.49 16 28 C -0.18 -1.19 10.18 -26.73 -0.27 -1.46 16 29 C -0.18 -1.17 9.73 -26.73 -0.26 -1.43 16 30 H 0.05 0.47 7.29 -51.93 -0.38 0.09 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.91 5.95 -51.93 -0.31 0.60 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.82 7.37 -51.93 -0.38 0.44 16 40 H 0.10 1.82 5.79 -51.93 -0.30 1.52 16 41 H 0.01 0.19 8.12 -51.93 -0.42 -0.23 16 42 H 0.09 1.48 6.79 -51.93 -0.35 1.13 16 43 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 44 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 45 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 46 H 0.08 1.11 7.68 -51.93 -0.40 0.71 16 47 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.10 0.61 8.11 -51.93 -0.42 0.19 16 49 H 0.09 0.65 8.05 -51.93 -0.42 0.23 16 50 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.09 0.66 7.61 -51.93 -0.39 0.26 16 LS Contribution 411.40 15.07 6.20 6.20 Total: -1.00 -32.42 411.40 -9.91 -42.33 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -9.08 Total: 9.15 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -1.23 Total: 4.60 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.93 Total: -54.88 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: 0.16 Total: -23.53 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.42 -9.91 -42.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194295029.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.069 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds