Wall clock time and date at job start Tue Mar 31 2020 20:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46675 * 2 1 4 4 C 1.53005 * 109.46943 * 119.99516 * 2 1 3 5 5 C 1.50700 * 109.47165 * 295.00249 * 4 2 1 6 6 O 1.21277 * 120.00106 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99790 * 180.02562 * 5 4 2 8 8 C 1.47020 * 125.65213 * 0.03521 * 7 5 4 9 9 C 1.54321 * 107.27324 * 181.02614 * 8 7 5 10 10 C 1.55153 * 102.94475 * 22.19297 * 9 8 7 11 11 H 1.09000 * 111.00255 * 82.56972 * 10 9 8 12 12 N 1.46895 * 111.03912 * 206.40835 * 10 9 8 13 13 C 1.46901 * 111.00232 * 300.53923 * 12 10 9 14 14 C 1.46906 * 110.99988 * 176.58453 * 12 10 9 15 15 C 1.50696 * 109.47127 * 189.99897 * 14 12 10 16 16 O 1.21290 * 119.99888 * 0.02562 * 15 14 12 17 17 N 1.34774 * 120.00105 * 179.97438 * 15 14 12 18 18 C 1.37094 * 120.00116 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00436 * 359.97438 * 18 17 15 20 20 C 1.38955 * 120.00003 * 180.02562 * 18 17 15 21 21 N 1.31419 * 119.99873 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00024 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47122 * 59.99976 * 22 20 18 24 24 H 1.48502 * 109.46974 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47308 * 299.99498 * 22 20 18 26 26 C 1.47427 * 125.65005 * 179.97438 * 7 5 4 27 27 C 1.53001 * 109.47268 * 239.99641 * 2 1 3 28 28 C 1.52998 * 117.49943 * 128.62154 * 27 2 1 29 29 C 1.52996 * 117.49678 * 59.99976 * 27 2 1 30 30 H 1.09000 * 109.47093 * 60.00615 * 1 2 3 31 31 H 1.09003 * 109.47249 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47102 * 300.00145 * 1 2 3 33 33 H 1.08992 * 109.46894 * 174.99932 * 4 2 1 34 34 H 1.09000 * 109.46957 * 55.00255 * 4 2 1 35 35 H 1.08995 * 109.88557 * 300.44730 * 8 7 5 36 36 H 1.09004 * 109.88187 * 61.45524 * 8 7 5 37 37 H 1.09004 * 110.72021 * 263.83175 * 9 8 7 38 38 H 1.09005 * 110.71769 * 140.56086 * 9 8 7 39 39 H 1.08993 * 109.47070 * 65.77678 * 13 12 10 40 40 H 1.08992 * 109.47022 * 185.78636 * 13 12 10 41 41 H 1.09003 * 109.46531 * 305.78485 * 13 12 10 42 42 H 1.09002 * 109.46564 * 310.00192 * 14 12 10 43 43 H 1.08994 * 109.46947 * 69.99730 * 14 12 10 44 44 H 0.96999 * 119.99747 * 0.02562 * 17 15 14 45 45 H 0.96998 * 119.99940 * 180.02562 * 21 20 18 46 46 H 1.09003 * 110.36271 * 37.06612 * 26 7 5 47 47 H 1.09000 * 110.36733 * 274.74573 * 26 7 5 48 48 H 1.09005 * 115.54767 * 274.33382 * 27 2 1 49 49 H 1.08995 * 117.49595 * 0.02562 * 28 27 2 50 50 H 1.08995 * 117.49659 * 145.02115 * 28 27 2 51 51 H 1.09004 * 117.49488 * 214.97949 * 29 27 2 52 52 H 1.09000 * 117.50044 * 359.97342 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6413 0.0572 2.4766 6 8 1.0117 1.0875 2.3632 7 7 1.9853 -0.3912 3.7002 8 6 2.7456 -1.6178 3.9808 9 6 2.8763 -1.7352 5.5140 10 6 1.6972 -0.8692 6.0306 11 1 0.7655 -1.4349 6.0257 12 7 1.9804 -0.3382 7.3707 13 6 2.2089 -1.4264 8.3307 14 6 0.8997 0.5468 7.8255 15 6 1.3299 1.2607 9.0810 16 8 2.4288 1.0531 9.5504 17 7 0.4939 2.1307 9.6816 18 6 0.8855 2.7805 10.8235 19 1 1.8636 2.5951 11.2420 20 6 0.0234 3.6771 11.4430 21 7 -1.1671 3.9024 10.9341 22 14 0.5566 4.5620 12.9992 23 1 1.7717 5.3683 12.7186 24 1 -0.5357 5.4571 13.4587 25 1 0.8579 3.5646 14.0574 26 6 1.6625 0.2678 4.9789 27 6 2.0401 -0.7213 -1.2492 28 6 3.0742 0.0050 -2.1116 29 6 1.6358 -0.1497 -2.6095 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7994 1.2057 34 1 1.6054 -1.7197 1.2953 35 1 2.2123 -2.4829 3.5869 36 1 3.7342 -1.5534 3.5261 37 1 3.8298 -1.3294 5.8520 38 1 2.7623 -2.7715 5.8325 39 1 3.1190 -1.9627 8.0621 40 1 2.3143 -1.0107 9.3327 41 1 1.3628 -2.1132 8.3094 42 1 0.6785 1.2789 7.0488 43 1 0.0079 -0.0450 8.0315 44 1 -0.3848 2.2970 9.3060 45 1 -1.7688 4.5285 11.3664 46 1 0.6690 0.7141 4.9354 47 1 2.4098 1.0256 5.2143 48 1 2.1267 -1.8046 -1.1641 49 1 3.3915 0.9966 -1.7889 50 1 3.8416 -0.6003 -2.5940 51 1 1.4570 -0.8568 -3.4195 52 1 1.0061 0.7400 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194295029.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:54 Heat of formation + Delta-G solvation = -63.897277 kcal Electronic energy + Delta-G solvation = -29295.547511 eV Core-core repulsion = 25294.844599 eV Total energy + Delta-G solvation = -4000.702912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.35970 -40.40920 -39.33052 -38.44767 -36.73319 -35.78114 -34.10484 -33.29127 -32.04776 -30.32338 -29.30610 -28.49509 -26.73588 -25.49341 -24.39930 -23.64053 -23.08103 -21.41733 -20.96135 -20.71232 -20.06260 -19.82448 -18.25766 -17.85736 -17.55156 -16.66779 -16.59763 -16.53387 -16.11893 -16.05630 -15.83076 -15.44377 -15.08582 -14.96584 -14.71025 -14.50209 -14.22260 -14.00539 -13.87901 -13.67867 -13.57636 -13.39620 -13.09694 -12.94230 -12.80795 -12.58306 -12.45658 -12.42805 -12.34839 -12.24543 -12.13651 -12.01482 -11.86171 -11.83492 -11.69826 -11.45080 -11.16864 -10.78855 -10.71476 -10.28935 -10.00816 -9.66164 -9.26328 -8.46569 -5.95555 1.39227 1.40834 1.52047 1.64057 1.88964 2.04406 2.28258 2.76535 2.94891 3.19773 3.29729 3.41909 3.66482 3.70214 3.76498 4.02880 4.06034 4.08506 4.17747 4.23341 4.28776 4.33896 4.37694 4.39841 4.48233 4.50232 4.57112 4.61842 4.65293 4.73186 4.75314 4.81739 4.83795 4.86806 4.93439 5.01645 5.03846 5.08965 5.17652 5.19242 5.26523 5.30580 5.31235 5.40555 5.45593 5.51456 5.84549 6.03859 6.19437 6.54367 6.59632 7.12186 7.17211 7.55552 8.10840 8.70688 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018703 B = 0.001967 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.696387 B =14229.813641 C =15249.604190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 H 0.052 0.948 4 C -0.117 4.117 5 C 0.518 3.482 6 O -0.585 6.585 7 N -0.620 5.620 8 C 0.102 3.898 9 C -0.116 4.116 10 C 0.073 3.927 11 H 0.067 0.933 12 N -0.525 5.525 13 C 0.030 3.970 14 C 0.055 3.945 15 C 0.443 3.557 16 O -0.610 6.610 17 N -0.576 5.576 18 C -0.332 4.332 19 H 0.081 0.919 20 C -0.015 4.015 21 N -0.922 5.922 22 Si 0.994 3.006 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.269 1.269 26 C 0.113 3.887 27 C -0.145 4.145 28 C -0.183 4.183 29 C -0.183 4.183 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.053 0.947 41 H 0.035 0.965 42 H 0.096 0.904 43 H 0.067 0.933 44 H 0.394 0.606 45 H 0.277 0.723 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.124 0.876 49 H 0.084 0.916 50 H 0.107 0.893 51 H 0.105 0.895 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 -17.078 -24.338 30.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.063 4.063 3 H 0.071 0.929 4 C -0.157 4.157 5 C 0.309 3.691 6 O -0.465 6.465 7 N -0.354 5.354 8 C -0.020 4.020 9 C -0.154 4.154 10 C -0.036 4.036 11 H 0.085 0.915 12 N -0.250 5.250 13 C -0.117 4.117 14 C -0.076 4.076 15 C 0.230 3.770 16 O -0.496 6.496 17 N -0.213 5.213 18 C -0.462 4.462 19 H 0.099 0.901 20 C -0.215 4.215 21 N -0.563 5.563 22 Si 0.818 3.182 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.011 4.011 27 C -0.163 4.163 28 C -0.220 4.220 29 C -0.220 4.220 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.228 0.772 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.142 0.858 49 H 0.102 0.898 50 H 0.125 0.875 51 H 0.124 0.876 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.956 -16.261 -24.132 29.702 hybrid contribution -1.255 0.823 0.989 1.797 sum 4.701 -15.438 -23.143 28.214 Atomic orbital electron populations 1.21867 0.95158 1.01906 1.01510 1.20408 0.95790 0.98110 0.91986 0.92949 1.21715 1.04273 1.00286 0.89386 1.21175 0.78261 0.85292 0.84331 1.90684 1.42346 1.26959 1.86533 1.48603 1.55577 1.26292 1.04895 1.22315 0.97292 0.86383 0.95991 1.22722 0.97972 1.01106 0.93585 1.22815 0.99207 0.94568 0.87025 0.91515 1.61536 1.41640 1.19623 1.02178 1.22401 1.01112 0.91885 0.96302 1.21730 0.93528 0.97085 0.95235 1.20656 0.85692 0.83135 0.87481 1.90461 1.23271 1.67780 1.68120 1.41952 1.16722 1.38202 1.24417 1.19639 1.01949 1.21666 1.02921 0.90080 1.26078 0.95114 0.97863 1.02436 1.69681 1.08051 1.36585 1.41993 0.84968 0.77861 0.77990 0.77392 1.19797 1.19611 1.19456 1.22057 1.00347 0.95636 0.83084 1.22314 1.03660 0.99780 0.90522 1.23085 0.92822 1.01950 1.04138 1.22983 0.98066 1.03400 0.97507 0.92854 0.91797 0.93665 0.86666 0.86155 0.88281 0.88970 0.90121 0.87321 0.89472 0.92794 0.94678 0.88559 0.91465 0.77218 0.91353 0.92315 0.92483 0.85815 0.89750 0.87504 0.87624 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.77 71.98 0.63 -2.07 16 2 C -0.04 -0.70 2.19 -10.79 -0.02 -0.73 16 3 H 0.05 1.11 7.71 -2.39 -0.02 1.09 16 4 C -0.12 -1.56 4.35 29.85 0.13 -1.43 16 5 C 0.52 11.89 7.57 87.66 0.66 12.56 16 6 O -0.58 -19.11 14.22 -3.02 -0.04 -19.15 16 7 N -0.62 -12.87 3.33 -811.77 -2.70 -15.57 16 8 C 0.10 1.21 6.49 86.73 0.56 1.78 16 9 C -0.12 -1.75 5.33 31.78 0.17 -1.58 16 10 C 0.07 1.65 2.70 46.31 0.12 1.78 16 11 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 12 N -0.52 -16.30 4.40 -893.44 -3.93 -20.23 16 13 C 0.03 0.89 8.90 127.69 1.14 2.03 16 14 C 0.06 1.99 5.34 85.55 0.46 2.44 16 15 C 0.44 21.41 7.42 87.66 0.65 22.06 16 16 O -0.61 -33.51 13.97 -3.06 -0.04 -33.56 16 17 N -0.58 -30.27 5.29 -307.00 -1.62 -31.89 16 18 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 19 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 20 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 21 N -0.92 -50.95 13.05 21.67 0.28 -50.66 16 22 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 26 C 0.11 2.96 5.46 86.86 0.47 3.44 16 27 C -0.14 -1.62 5.15 -10.80 -0.06 -1.67 16 28 C -0.18 -2.06 10.18 30.59 0.31 -1.75 16 29 C -0.18 -2.10 9.73 30.59 0.30 -1.81 16 30 H 0.05 0.94 7.29 -2.39 -0.02 0.92 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 1.12 5.95 -2.39 -0.01 1.11 16 33 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.09 2.08 7.37 -2.39 -0.02 2.06 16 40 H 0.05 2.06 5.79 -2.39 -0.01 2.04 16 41 H 0.03 0.86 8.12 -2.39 -0.02 0.84 16 42 H 0.10 3.30 6.79 -2.39 -0.02 3.28 16 43 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 44 H 0.39 19.95 7.90 -92.71 -0.73 19.21 16 45 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 46 H 0.06 1.74 7.68 -2.39 -0.02 1.72 16 47 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.12 0.93 8.11 -2.38 -0.02 0.91 16 49 H 0.08 1.11 8.05 -2.39 -0.02 1.09 16 50 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 52 H 0.08 1.14 7.61 -2.39 -0.02 1.12 16 Total: -1.00 -74.77 411.40 0.95 -73.82 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: 0.17 Total: 35.24 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 6.81 Total: 16.34 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -7.97 Total: -118.35 kcal Atomic # 8 Polarization: -52.62 SS G_CDS: -0.09 Total: -52.71 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -74.77 0.95 -73.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194295029.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.923 kcal (2) G-P(sol) polarization free energy of solvation -74.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds