Wall clock time and date at job start Tue Mar 31 2020 20:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46813 * 2 1 4 4 C 1.52994 * 109.47267 * 120.00896 * 2 1 3 5 5 C 1.50701 * 109.46854 * 294.99693 * 4 2 1 6 6 O 1.21282 * 120.00308 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00088 * 179.97438 * 5 4 2 8 8 C 1.47028 * 125.64921 * 359.97438 * 7 5 4 9 9 C 1.54325 * 107.27197 * 178.99285 * 8 7 5 10 10 C 1.55160 * 102.94166 * 337.80940 * 9 8 7 11 11 H 1.08996 * 111.00409 * 277.38305 * 10 9 8 12 12 N 1.46898 * 110.99969 * 153.57416 * 10 9 8 13 13 C 1.46904 * 111.00027 * 60.09361 * 12 10 9 14 14 C 1.46902 * 111.00067 * 184.04533 * 12 10 9 15 15 C 1.50693 * 109.47433 * 169.99750 * 14 12 10 16 16 O 1.21296 * 120.00191 * 0.02562 * 15 14 12 17 17 N 1.34783 * 120.00225 * 179.97438 * 15 14 12 18 18 C 1.37099 * 119.99951 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99862 * 0.02562 * 18 17 15 20 20 C 1.38947 * 119.99727 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00020 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99996 * 180.02562 * 20 18 17 23 23 H 1.48511 * 109.47006 * 60.00434 * 22 20 18 24 24 H 1.48498 * 109.47418 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47269 * 300.00565 * 22 20 18 26 26 C 1.47469 * 125.63301 * 180.02562 * 7 5 4 27 27 C 1.52997 * 109.46756 * 240.00828 * 2 1 3 28 28 C 1.53004 * 117.49920 * 128.75029 * 27 2 1 29 29 C 1.53001 * 117.50598 * 60.08586 * 27 2 1 30 30 H 1.08997 * 109.47123 * 299.99368 * 1 2 3 31 31 H 1.08997 * 109.47216 * 59.99614 * 1 2 3 32 32 H 1.09001 * 109.46622 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47317 * 175.00354 * 4 2 1 34 34 H 1.09003 * 109.47474 * 54.99669 * 4 2 1 35 35 H 1.09007 * 109.87496 * 59.57711 * 8 7 5 36 36 H 1.08991 * 109.88246 * 298.41415 * 8 7 5 37 37 H 1.09006 * 110.71666 * 219.44542 * 9 8 7 38 38 H 1.09004 * 110.71715 * 96.17398 * 9 8 7 39 39 H 1.09006 * 109.47067 * 178.84792 * 13 12 10 40 40 H 1.09009 * 109.46721 * 58.85071 * 13 12 10 41 41 H 1.08996 * 109.47287 * 298.84912 * 13 12 10 42 42 H 1.09004 * 109.47514 * 290.00403 * 14 12 10 43 43 H 1.09004 * 109.46694 * 49.99792 * 14 12 10 44 44 H 0.96999 * 119.99394 * 0.02562 * 17 15 14 45 45 H 0.97006 * 119.99810 * 180.02562 * 21 20 18 46 46 H 1.09001 * 110.34742 * 85.23142 * 26 7 5 47 47 H 1.09001 * 110.40144 * 322.89754 * 26 7 5 48 48 H 1.09005 * 115.55006 * 274.40930 * 27 2 1 49 49 H 1.08995 * 117.49829 * 359.97438 * 28 27 2 50 50 H 1.08996 * 117.50151 * 145.01923 * 28 27 2 51 51 H 1.08998 * 117.50424 * 214.97814 * 29 27 2 52 52 H 1.09001 * 117.49284 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.6415 0.0568 2.4765 6 8 1.0111 1.0867 2.3634 7 7 1.9846 -0.3923 3.7000 8 6 2.7428 -1.6203 3.9806 9 6 2.9179 -1.7112 5.5112 10 6 2.7393 -0.2395 5.9693 11 1 3.6676 0.3203 5.8561 12 7 2.2541 -0.1746 7.3543 13 6 3.2000 -0.8203 8.2743 14 6 1.9937 1.2142 7.7563 15 6 1.2725 1.2273 9.0794 16 8 1.0024 0.1826 9.6334 17 7 0.9284 2.4000 9.6478 18 6 0.2727 2.4120 10.8518 19 1 0.0323 1.4817 11.3450 20 6 -0.0824 3.6209 11.4374 21 7 0.2097 4.7528 10.8370 22 14 -0.9751 3.6373 13.0782 23 1 -0.1333 2.9742 14.1064 24 1 -1.2392 5.0411 13.4841 25 1 -2.2630 2.9094 12.9484 26 6 1.6606 0.2664 4.9790 27 6 2.0400 -0.7211 -1.2494 28 6 3.0763 0.0042 -2.1101 29 6 1.6374 -0.1481 -2.6097 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1264 -0.7996 1.2054 34 1 1.6055 -1.7200 1.2949 35 1 3.7190 -1.5715 3.4980 36 1 2.1909 -2.4876 3.6184 37 1 3.9134 -2.0758 5.7644 38 1 2.1495 -2.3477 5.9501 39 1 2.8263 -0.7399 9.2952 40 1 4.1700 -0.3280 8.2027 41 1 3.3057 -1.8719 8.0078 42 1 2.9391 1.7481 7.8525 43 1 1.3766 1.7013 7.0013 44 1 1.1447 3.2355 9.2049 45 1 -0.0379 5.5968 11.2461 46 1 0.6670 -0.0289 5.3164 47 1 1.7202 1.3498 4.8743 48 1 2.1254 -1.8045 -1.1649 49 1 3.3945 0.9952 -1.7866 50 1 3.8431 -0.6020 -2.5924 51 1 1.4582 -0.8544 -3.4203 52 1 1.0088 0.7424 -2.6145 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194295031.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:57 Heat of formation + Delta-G solvation = -63.898903 kcal Electronic energy + Delta-G solvation = -29295.085523 eV Core-core repulsion = 25294.382541 eV Total energy + Delta-G solvation = -4000.702982 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.35725 -40.40583 -39.32833 -38.44357 -36.73099 -35.78086 -34.10213 -33.29165 -32.04748 -30.32636 -29.30579 -28.50208 -26.73422 -25.49143 -24.39683 -23.64142 -23.07953 -21.41563 -20.95209 -20.72617 -20.07011 -19.82004 -18.25711 -17.83154 -17.50862 -16.89510 -16.57421 -16.38985 -16.13502 -16.07458 -15.70865 -15.48354 -15.13899 -14.95353 -14.75652 -14.50666 -14.23411 -13.95336 -13.85913 -13.69398 -13.56099 -13.41423 -13.09264 -12.97412 -12.80429 -12.57023 -12.45924 -12.42731 -12.34105 -12.24667 -12.13633 -12.00851 -11.87726 -11.82013 -11.70152 -11.45163 -11.16418 -10.78949 -10.71135 -10.29045 -10.00940 -9.66305 -9.26458 -8.46562 -5.95583 1.39215 1.40838 1.52060 1.64112 1.88893 2.04313 2.28224 2.76471 2.94968 3.19730 3.29806 3.41811 3.66429 3.69832 3.76891 4.02377 4.05512 4.09144 4.17510 4.24415 4.28142 4.31865 4.38693 4.40903 4.47912 4.50440 4.57676 4.61432 4.65474 4.72314 4.74338 4.81363 4.83850 4.87684 4.93902 5.00102 5.03779 5.09187 5.18541 5.19680 5.25932 5.30742 5.31607 5.40552 5.44913 5.51356 5.84278 6.03723 6.19365 6.54375 6.59646 7.12176 7.17247 7.55479 8.10807 8.70680 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.001970 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.480924 B =14207.548107 C =15254.697485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 H 0.054 0.946 4 C -0.117 4.117 5 C 0.518 3.482 6 O -0.585 6.585 7 N -0.620 5.620 8 C 0.102 3.898 9 C -0.116 4.116 10 C 0.072 3.928 11 H 0.067 0.933 12 N -0.524 5.524 13 C 0.029 3.971 14 C 0.055 3.945 15 C 0.443 3.557 16 O -0.610 6.610 17 N -0.576 5.576 18 C -0.332 4.332 19 H 0.081 0.919 20 C -0.015 4.015 21 N -0.922 5.922 22 Si 0.994 3.006 23 H -0.269 1.269 24 H -0.272 1.272 25 H -0.273 1.273 26 C 0.113 3.887 27 C -0.145 4.145 28 C -0.181 4.181 29 C -0.184 4.184 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.032 0.968 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.394 0.606 45 H 0.277 0.723 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.123 0.877 49 H 0.085 0.915 50 H 0.107 0.893 51 H 0.105 0.895 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.486 -13.943 -24.631 30.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.062 4.062 3 H 0.073 0.927 4 C -0.157 4.157 5 C 0.309 3.691 6 O -0.465 6.465 7 N -0.354 5.354 8 C -0.020 4.020 9 C -0.154 4.154 10 C -0.037 4.037 11 H 0.084 0.916 12 N -0.249 5.249 13 C -0.118 4.118 14 C -0.076 4.076 15 C 0.230 3.770 16 O -0.496 6.496 17 N -0.213 5.213 18 C -0.462 4.462 19 H 0.099 0.901 20 C -0.215 4.215 21 N -0.563 5.563 22 Si 0.818 3.182 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.011 4.011 27 C -0.163 4.163 28 C -0.218 4.218 29 C -0.221 4.221 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.050 0.950 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.114 0.886 44 H 0.228 0.772 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.141 0.859 49 H 0.104 0.896 50 H 0.125 0.875 51 H 0.123 0.877 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.486 -14.141 -24.324 29.692 hybrid contribution 0.011 1.604 0.912 1.845 sum 9.496 -12.537 -23.412 28.205 Atomic orbital electron populations 1.21874 0.95377 1.01806 1.01486 1.20401 0.95611 0.98211 0.91988 0.92711 1.21715 1.04415 1.00146 0.89384 1.21179 0.78307 0.85254 0.84329 1.90685 1.42165 1.27096 1.86577 1.48617 1.55784 1.26113 1.04865 1.22321 0.97321 0.86304 0.96027 1.22731 1.04561 0.94202 0.93908 1.22816 0.95457 0.98819 0.86569 0.91569 1.61546 1.46799 1.14683 1.01889 1.22427 0.92448 0.99877 0.97094 1.21736 0.99893 0.91274 0.94688 1.20657 0.84231 0.83626 0.88440 1.90458 1.60008 1.32680 1.66475 1.41955 1.51839 1.07368 1.20136 1.19642 1.34497 0.94108 0.97920 0.90070 1.26076 0.98312 0.94011 1.03095 1.69682 1.47648 0.98035 1.40952 0.84969 0.78431 0.77559 0.77252 1.19454 1.19613 1.19790 1.22065 0.98524 0.97203 0.83329 1.22310 1.03735 0.99751 0.90540 1.23100 0.92698 1.01981 1.03989 1.22997 0.98208 1.03396 0.97491 0.93754 0.92801 0.91996 0.86344 0.86475 0.88310 0.88914 0.87324 0.90080 0.92629 0.94964 0.89234 0.91496 0.88551 0.77225 0.91355 0.92432 0.92329 0.85930 0.89597 0.87475 0.87701 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.78 71.98 0.63 -2.18 16 2 C -0.04 -0.69 2.19 -10.79 -0.02 -0.71 16 3 H 0.05 1.13 7.71 -2.39 -0.02 1.12 16 4 C -0.12 -1.56 4.35 29.85 0.13 -1.43 16 5 C 0.52 11.89 7.57 87.66 0.66 12.55 16 6 O -0.58 -19.10 14.22 -3.04 -0.04 -19.14 16 7 N -0.62 -12.87 3.33 -811.63 -2.70 -15.57 16 8 C 0.10 1.21 6.49 86.73 0.56 1.78 16 9 C -0.12 -1.75 5.29 31.78 0.17 -1.58 16 10 C 0.07 1.64 2.71 46.31 0.13 1.77 16 11 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 12 N -0.52 -16.29 4.40 -893.37 -3.93 -20.22 16 13 C 0.03 0.85 8.97 127.69 1.15 1.99 16 14 C 0.06 1.98 5.34 85.55 0.46 2.44 16 15 C 0.44 21.42 7.46 87.65 0.65 22.08 16 16 O -0.61 -33.50 13.92 -3.08 -0.04 -33.54 16 17 N -0.58 -30.29 5.29 -306.98 -1.62 -31.91 16 18 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 19 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 20 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 21 N -0.92 -50.98 13.05 21.66 0.28 -50.69 16 22 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 C 0.11 2.96 5.43 86.85 0.47 3.43 16 27 C -0.15 -1.62 5.14 -10.79 -0.06 -1.67 16 28 C -0.18 -1.95 10.18 30.62 0.31 -1.64 16 29 C -0.18 -2.11 9.74 30.62 0.30 -1.82 16 30 H 0.04 1.14 5.95 -2.39 -0.01 1.13 16 31 H 0.05 0.97 7.29 -2.39 -0.02 0.95 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.11 1.10 8.11 -2.38 -0.02 1.08 16 38 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.05 2.13 5.81 -2.38 -0.01 2.11 16 40 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.09 2.08 7.19 -2.39 -0.02 2.07 16 42 H 0.07 2.16 8.12 -2.38 -0.02 2.14 16 43 H 0.10 3.30 6.77 -2.38 -0.02 3.29 16 44 H 0.39 19.96 7.90 -92.71 -0.73 19.23 16 45 H 0.28 14.38 8.31 -92.70 -0.77 13.61 16 46 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.06 1.74 7.68 -2.39 -0.02 1.72 16 48 H 0.12 0.94 8.11 -2.38 -0.02 0.93 16 49 H 0.09 1.07 8.05 -2.39 -0.02 1.05 16 50 H 0.11 0.84 8.14 -2.39 -0.02 0.83 16 51 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.08 1.14 7.61 -2.39 -0.02 1.12 16 Total: -1.00 -74.73 411.22 0.96 -73.77 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: 0.17 Total: 35.34 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 6.82 Total: 16.31 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -7.97 Total: -118.39 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -0.09 Total: -52.69 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -74.73 0.96 -73.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194295031.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.870 kcal (2) G-P(sol) polarization free energy of solvation -74.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds