Wall clock time and date at job start Tue Mar 31 2020 20:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47002 * 2 1 4 4 C 1.53007 * 109.46970 * 240.00112 * 2 1 3 5 5 C 1.50698 * 109.46840 * 64.99829 * 4 2 1 6 6 O 1.21282 * 120.00347 * 0.02562 * 5 4 2 7 7 N 1.34783 * 119.99962 * 180.27551 * 5 4 2 8 8 C 1.47019 * 125.64539 * 359.74529 * 7 5 4 9 9 C 1.54321 * 107.27167 * 181.02156 * 8 7 5 10 10 C 1.55160 * 102.94204 * 22.19817 * 9 8 7 11 11 H 1.09004 * 111.00535 * 82.56456 * 10 9 8 12 12 N 1.46902 * 111.00439 * 206.38474 * 10 9 8 13 13 C 1.46893 * 110.99914 * 299.68156 * 12 10 9 14 14 C 1.46906 * 110.99658 * 175.73134 * 12 10 9 15 15 C 1.50700 * 109.46621 * 189.99918 * 14 12 10 16 16 O 1.21288 * 120.00165 * 0.02562 * 15 14 12 17 17 N 1.34776 * 119.99627 * 179.97438 * 15 14 12 18 18 C 1.37098 * 120.00008 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00059 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00049 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00006 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00269 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47026 * 90.00346 * 22 20 18 24 24 H 1.48497 * 109.47194 * 210.00541 * 22 20 18 25 25 H 1.48502 * 109.46635 * 330.00523 * 22 20 18 26 26 C 1.47423 * 125.64852 * 179.44364 * 7 5 4 27 27 C 1.52998 * 109.47519 * 120.00290 * 2 1 3 28 28 C 1.52995 * 117.49587 * 248.62351 * 27 2 1 29 29 C 1.52998 * 117.49940 * 179.97438 * 27 2 1 30 30 H 1.09000 * 109.46928 * 299.99712 * 1 2 3 31 31 H 1.08992 * 109.47639 * 60.00106 * 1 2 3 32 32 H 1.08999 * 109.47002 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47301 * 304.99842 * 4 2 1 34 34 H 1.08996 * 109.47054 * 184.99646 * 4 2 1 35 35 H 1.09001 * 109.88615 * 300.44142 * 8 7 5 36 36 H 1.09008 * 109.88276 * 61.45399 * 8 7 5 37 37 H 1.09005 * 110.72168 * 140.55699 * 9 8 7 38 38 H 1.09001 * 110.72628 * 263.83554 * 9 8 7 39 39 H 1.09004 * 109.47225 * 65.89511 * 13 12 10 40 40 H 1.09003 * 109.47416 * 185.88989 * 13 12 10 41 41 H 1.09000 * 109.47253 * 305.89410 * 13 12 10 42 42 H 1.09000 * 109.47246 * 309.99681 * 14 12 10 43 43 H 1.08994 * 109.47419 * 70.00135 * 14 12 10 44 44 H 0.97002 * 120.00327 * 0.02562 * 17 15 14 45 45 H 0.97003 * 120.00268 * 179.97438 * 21 20 18 46 46 H 1.09007 * 110.36466 * 274.74314 * 26 7 5 47 47 H 1.08995 * 110.36938 * 37.06915 * 26 7 5 48 48 H 1.08997 * 115.54745 * 34.32744 * 27 2 1 49 49 H 1.09000 * 117.50348 * 359.97438 * 28 27 2 50 50 H 1.09008 * 117.49985 * 145.02066 * 28 27 2 51 51 H 1.08998 * 117.50197 * 214.97489 * 29 27 2 52 52 H 1.09002 * 117.50121 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9799 -0.3945 -3.7005 8 6 2.7381 -1.6224 -3.9812 9 6 2.9076 -1.7164 -5.5122 10 6 2.7261 -0.2459 -5.9728 11 1 3.6543 0.3152 -5.8634 12 7 2.2367 -0.1842 -7.3566 13 6 3.1829 -0.8261 -8.2787 14 6 1.9688 1.2031 -7.7587 15 6 1.2438 1.2119 -9.0798 16 8 0.9762 0.1656 -9.6318 17 7 0.8918 2.3825 -9.6475 18 6 0.2318 2.3906 -10.8491 19 1 -0.0065 1.4589 -11.3406 20 6 -0.1306 3.5974 -11.4346 21 7 -0.7628 3.6052 -12.5867 22 14 0.2808 5.2090 -10.5842 23 1 1.6168 5.6780 -11.0320 24 1 -0.7431 6.2271 -10.9309 25 1 0.2958 5.0028 -9.1137 26 6 1.6460 0.2578 -4.9797 27 6 2.0401 -0.7213 1.2492 28 6 2.7419 0.1226 2.3150 29 6 3.5550 -0.8286 1.4338 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6054 -1.7198 -1.2953 34 1 3.1262 -0.7994 -1.2057 35 1 3.7161 -1.5719 -3.5024 36 1 2.1895 -2.4893 -3.6127 37 1 3.9024 -2.0808 -5.7685 38 1 2.1382 -2.3544 -5.9470 39 1 3.2304 -1.8941 -8.0654 40 1 2.8490 -0.6753 -9.3053 41 1 4.1716 -0.3856 -8.1498 42 1 1.3515 1.6879 -7.0023 43 1 2.9114 1.7412 -7.8580 44 1 1.1054 3.2193 -9.2059 45 1 -1.0162 4.4477 -12.9953 46 1 0.6524 -0.0437 -5.3113 47 1 1.7004 1.3417 -4.8785 48 1 1.4311 -1.5585 1.5901 49 1 2.8407 1.1916 2.1261 50 1 2.5948 -0.1593 3.3576 51 1 3.9426 -1.7360 1.8969 52 1 4.1884 -0.3857 0.6651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194295036.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:04 Heat of formation + Delta-G solvation = -35.292706 kcal Electronic energy + Delta-G solvation = -29450.857242 eV Core-core repulsion = 25451.394718 eV Total energy + Delta-G solvation = -3999.462525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.51161 -39.13559 -38.33018 -37.56927 -35.56968 -33.88342 -33.44356 -31.68439 -31.17937 -29.50358 -28.06163 -27.77993 -24.97067 -24.31493 -23.35077 -22.87450 -22.64562 -20.41806 -20.24161 -19.40595 -19.14687 -18.22729 -17.41323 -16.85216 -16.21810 -15.87085 -15.67940 -15.28132 -14.94917 -14.74608 -14.61604 -14.39371 -14.01347 -13.88004 -13.63534 -13.25285 -13.14998 -13.08380 -12.90923 -12.69666 -12.42900 -12.27457 -12.04963 -11.96551 -11.85704 -11.62684 -11.54559 -11.47616 -11.37392 -11.17455 -11.10782 -11.04195 -10.85723 -10.58217 -10.57548 -10.34143 -9.97017 -9.85488 -9.53169 -8.82628 -8.59749 -8.18189 -8.04286 -6.30603 -3.81965 2.46383 2.69697 3.04680 3.07991 3.16521 3.39965 3.73183 3.84525 4.07248 4.11247 4.28660 4.40872 4.46185 4.51977 4.61163 4.70189 4.78995 4.84388 4.87890 5.03172 5.09912 5.13482 5.16790 5.22471 5.26333 5.29448 5.36086 5.45797 5.48485 5.52000 5.55687 5.60306 5.69519 5.72499 5.75112 5.78933 5.81501 5.83520 5.83915 5.91714 6.00289 6.04936 6.07235 6.22004 6.43049 7.07258 7.21661 7.33355 7.58652 7.99807 8.14726 8.60426 8.95558 9.42942 9.83325 10.82372 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016714 B = 0.002154 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.869599 B =12995.128948 C =14125.075815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.045 4.045 3 H 0.078 0.922 4 C -0.129 4.129 5 C 0.527 3.473 6 O -0.536 6.536 7 N -0.619 5.619 8 C 0.103 3.897 9 C -0.123 4.123 10 C 0.069 3.931 11 H 0.055 0.945 12 N -0.507 5.507 13 C 0.024 3.976 14 C 0.039 3.961 15 C 0.453 3.547 16 O -0.559 6.559 17 N -0.590 5.590 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.878 3.122 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.112 3.888 27 C -0.148 4.148 28 C -0.179 4.179 29 C -0.183 4.183 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.015 0.985 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.105 0.895 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.093 0.907 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.385 -9.697 27.206 31.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.064 4.064 3 H 0.096 0.904 4 C -0.169 4.169 5 C 0.316 3.684 6 O -0.413 6.413 7 N -0.355 5.355 8 C -0.020 4.020 9 C -0.161 4.161 10 C -0.041 4.041 11 H 0.073 0.927 12 N -0.231 5.231 13 C -0.124 4.124 14 C -0.092 4.092 15 C 0.239 3.761 16 O -0.441 6.441 17 N -0.230 5.230 18 C -0.433 4.433 19 H 0.138 0.862 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.705 3.295 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.194 1.194 26 C -0.011 4.011 27 C -0.167 4.167 28 C -0.216 4.216 29 C -0.220 4.220 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.034 0.966 42 H 0.108 0.892 43 H 0.068 0.932 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.123 0.877 49 H 0.113 0.887 50 H 0.111 0.889 51 H 0.112 0.888 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.293 -9.965 26.759 30.353 hybrid contribution 1.097 1.782 0.566 2.168 sum 11.390 -8.183 27.325 30.714 Atomic orbital electron populations 1.21921 0.94140 1.01534 1.03208 1.20472 0.96675 0.98813 0.90399 0.90354 1.21708 1.02792 1.00239 0.92137 1.20409 0.79150 0.85563 0.83276 1.90695 1.39983 1.24742 1.85878 1.48491 1.55777 1.25422 1.05768 1.22057 0.95948 0.87247 0.96792 1.22698 1.03428 0.96884 0.93098 1.22843 0.95825 0.96327 0.89104 0.92699 1.61593 1.45393 1.16094 1.00037 1.22528 0.91954 0.98611 0.99301 1.21954 0.99742 0.89670 0.97877 1.19573 0.85041 0.84509 0.86987 1.90531 1.57829 1.31115 1.64602 1.42218 1.53262 1.06195 1.21312 1.19418 1.32207 0.96617 0.95029 0.86240 1.25035 0.97103 0.97956 0.96043 1.69620 1.38834 1.27322 1.16320 0.86691 0.79164 0.84062 0.79625 1.19673 1.20143 1.19407 1.22302 0.99130 0.98030 0.81628 1.22404 0.94624 1.01961 0.97662 1.23017 1.04546 0.97739 0.96252 1.22968 0.93934 1.01813 1.03300 0.92759 0.90469 0.93265 0.88859 0.89022 0.91417 0.91058 0.90011 0.88949 0.91693 0.88508 0.96631 0.89200 0.93213 0.79716 0.91620 0.89845 0.90486 0.87730 0.88740 0.88905 0.88845 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.92 37.16 0.33 -1.05 16 2 C -0.04 -0.37 2.19 -90.62 -0.20 -0.57 16 3 H 0.08 0.77 7.71 -51.93 -0.40 0.37 16 4 C -0.13 -0.99 4.28 -27.88 -0.12 -1.11 16 5 C 0.53 6.00 7.57 -10.98 -0.08 5.92 16 6 O -0.54 -8.11 14.22 5.56 0.08 -8.03 16 7 N -0.62 -6.58 3.32 -170.38 -0.57 -7.15 16 8 C 0.10 0.77 6.48 -3.07 -0.02 0.75 16 9 C -0.12 -1.07 5.37 -24.90 -0.13 -1.20 16 10 C 0.07 0.79 2.71 -65.44 -0.18 0.61 16 11 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 12 N -0.51 -7.63 4.40 -233.60 -1.03 -8.65 16 13 C 0.02 0.34 8.91 60.06 0.54 0.88 16 14 C 0.04 0.65 5.34 -4.97 -0.03 0.62 16 15 C 0.45 10.15 7.41 -10.99 -0.08 10.07 16 16 O -0.56 -14.57 13.97 5.55 0.08 -14.49 16 17 N -0.59 -14.04 5.09 -10.97 -0.06 -14.10 16 18 C -0.30 -8.57 10.16 -14.93 -0.15 -8.73 16 19 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 20 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.77 13.96 55.50 0.77 -25.00 16 22 Si 0.88 19.54 27.74 -169.99 -4.71 14.83 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 26 C 0.11 1.39 5.44 -2.41 -0.01 1.37 16 27 C -0.15 -0.97 5.15 -90.62 -0.47 -1.43 16 28 C -0.18 -1.11 10.18 -26.71 -0.27 -1.38 16 29 C -0.18 -1.05 9.67 -26.71 -0.26 -1.31 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.91 5.95 -51.93 -0.31 0.60 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.56 7.12 -51.93 -0.37 0.19 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.81 7.40 -51.93 -0.38 0.43 16 40 H 0.10 1.77 5.79 -51.93 -0.30 1.47 16 41 H 0.02 0.19 8.12 -51.93 -0.42 -0.23 16 42 H 0.09 1.37 6.76 -51.93 -0.35 1.02 16 43 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 44 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 47 H 0.08 1.02 7.67 -51.93 -0.40 0.62 16 48 H 0.10 0.63 8.11 -51.93 -0.42 0.21 16 49 H 0.09 0.61 8.05 -51.93 -0.42 0.20 16 50 H 0.09 0.50 8.14 -51.92 -0.42 0.07 16 51 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.09 0.53 7.58 -51.93 -0.39 0.14 16 LS Contribution 408.10 15.07 6.15 6.15 Total: -1.00 -33.56 408.10 -9.54 -43.10 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -9.03 Total: 8.83 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.23 Total: 4.50 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.87 Total: -54.90 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: 0.16 Total: -22.52 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.56 -9.54 -43.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194295036.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.811 kcal (2) G-P(sol) polarization free energy of solvation -33.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds