Wall clock time and date at job start Tue Mar 31 2020 20:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46691 * 2 1 4 4 C 1.52999 * 109.47268 * 240.00069 * 2 1 3 5 5 C 1.50703 * 109.47209 * 64.99604 * 4 2 1 6 6 O 1.21284 * 119.99595 * 0.28095 * 5 4 2 7 7 N 1.34770 * 120.00080 * 179.97438 * 5 4 2 8 8 C 1.44676 * 118.54988 * 0.02562 * 7 5 4 9 9 C 1.54943 * 109.51989 * 269.08279 * 8 7 5 10 10 C 1.47544 * 109.73408 * 290.51570 * 9 8 7 11 11 N 1.46262 * 114.37355 * 62.21788 * 10 9 8 12 12 C 1.46903 * 110.99950 * 148.55613 * 11 10 9 13 13 C 1.50706 * 109.46876 * 64.05798 * 12 11 10 14 14 O 1.21289 * 120.00292 * 4.77181 * 13 12 11 15 15 N 1.34781 * 119.99590 * 184.77480 * 13 12 11 16 16 C 1.37094 * 119.99461 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00641 * 0.02562 * 16 15 13 18 18 C 1.38955 * 119.99716 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99854 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46994 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47383 * 120.00089 * 20 18 16 23 23 H 1.48508 * 109.47355 * 240.00373 * 20 18 16 24 24 C 1.44761 * 110.64373 * 272.25313 * 11 10 9 25 25 C 1.47777 * 118.54932 * 179.73621 * 7 5 4 26 26 C 1.52994 * 109.47350 * 119.99944 * 2 1 3 27 27 C 1.53004 * 117.50174 * 248.75057 * 26 2 1 28 28 C 1.53004 * 117.49937 * 180.08927 * 26 2 1 29 29 H 1.09001 * 109.46857 * 299.99824 * 1 2 3 30 30 H 1.09002 * 109.47388 * 60.00155 * 1 2 3 31 31 H 1.09002 * 109.46876 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47265 * 305.00139 * 4 2 1 33 33 H 1.08997 * 109.47502 * 184.99889 * 4 2 1 34 34 H 1.09005 * 109.45944 * 29.09913 * 8 7 5 35 35 H 1.09000 * 109.46503 * 149.06998 * 8 7 5 36 36 H 1.09000 * 109.42830 * 50.59818 * 9 8 7 37 37 H 1.09001 * 109.42715 * 170.44131 * 9 8 7 38 38 H 1.08997 * 108.50074 * 183.48493 * 10 9 8 39 39 H 1.09002 * 108.50257 * 300.95187 * 10 9 8 40 40 H 1.08995 * 109.47250 * 184.05945 * 12 11 10 41 41 H 1.09001 * 109.47047 * 304.06175 * 12 11 10 42 42 H 0.96996 * 119.99929 * 0.02562 * 15 13 12 43 43 H 0.97000 * 119.99925 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.43721 * 214.22490 * 24 11 10 45 45 H 1.08998 * 109.43893 * 334.14155 * 24 11 10 46 46 H 1.09005 * 109.06196 * 258.65104 * 25 7 5 47 47 H 1.08999 * 109.06087 * 17.57646 * 25 7 5 48 48 H 1.09004 * 115.55224 * 34.41817 * 26 2 1 49 49 H 1.09004 * 117.49389 * 359.97438 * 27 26 2 50 50 H 1.08997 * 117.50616 * 145.02214 * 27 26 2 51 51 H 1.09007 * 117.49666 * 214.97828 * 28 26 2 52 52 H 1.08990 * 117.49699 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0156 1.0898 -2.3630 7 7 1.9853 -0.3914 -3.7001 8 6 2.7368 -1.6236 -3.7988 9 6 4.2536 -1.3076 -3.7833 10 6 4.6345 -0.6316 -5.0382 11 7 3.9790 0.6583 -5.2520 12 6 4.8489 1.5726 -6.0040 13 6 5.0926 1.0141 -7.3824 14 8 4.5229 0.0038 -7.7369 15 7 5.9439 1.6374 -8.2211 16 6 6.1660 1.1291 -9.4748 17 1 5.6586 0.2295 -9.7905 18 6 7.0431 1.7719 -10.3397 19 7 7.6602 2.8668 -9.9558 20 14 7.3453 1.0798 -12.0482 21 1 6.5350 -0.1508 -12.2342 22 1 6.9549 2.0875 -13.0668 23 1 8.7857 0.7526 -12.2022 24 6 2.7092 0.4804 -5.9239 25 6 1.5726 0.3940 -4.8819 26 6 2.0400 -0.7212 1.2492 27 6 2.7393 0.1231 2.3165 28 6 3.5551 -0.8262 1.4352 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7197 -1.2952 33 1 3.1263 -0.7994 -1.2056 34 1 2.4913 -2.2674 -2.9541 35 1 2.4812 -2.1315 -4.7288 36 1 4.4799 -0.6575 -2.9382 37 1 4.8164 -2.2361 -3.6864 38 1 5.7132 -0.4749 -5.0331 39 1 4.3878 -1.2876 -5.8731 40 1 4.3671 2.5468 -6.0866 41 1 5.7999 1.6806 -5.4824 42 1 6.3998 2.4452 -7.9374 43 1 8.2722 3.3158 -10.5597 44 1 2.5288 1.3254 -6.5883 45 1 2.7329 -0.4405 -6.5065 46 1 0.7021 -0.0786 -5.3371 47 1 1.3036 1.4012 -4.5638 48 1 1.4319 -1.5594 1.5894 49 1 2.8363 1.1924 2.1284 50 1 2.5916 -0.1598 3.3587 51 1 3.9436 -1.7334 1.8982 52 1 4.1883 -0.3818 0.6675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198266947.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:34 Heat of formation + Delta-G solvation = -43.654140 kcal Electronic energy + Delta-G solvation = -30451.812520 eV Core-core repulsion = 26451.987416 eV Total energy + Delta-G solvation = -3999.825104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.45506 -39.17872 -38.05787 -37.06838 -34.96748 -33.80094 -33.43888 -32.48142 -31.36838 -29.65531 -27.77939 -26.41125 -25.61375 -24.13688 -23.65987 -22.60361 -21.88008 -20.67814 -20.05596 -19.19272 -18.64434 -17.90465 -17.09727 -16.62453 -15.96909 -15.87261 -15.54415 -15.19519 -14.85931 -14.69285 -14.45130 -14.18876 -13.93517 -13.86291 -13.57499 -13.21439 -13.03497 -12.98164 -12.85551 -12.40314 -12.08540 -11.94048 -11.80866 -11.63391 -11.51782 -11.46045 -11.33231 -11.20455 -11.17437 -10.96187 -10.90132 -10.66560 -10.40871 -10.40047 -10.36391 -10.30687 -10.15098 -9.58031 -9.49073 -9.14189 -8.45270 -8.05369 -7.60905 -6.49507 -3.91013 2.75408 3.09610 3.10807 3.21254 3.27708 3.56417 3.79587 4.10126 4.20113 4.37133 4.60257 4.64860 4.74249 4.86158 4.91212 4.95035 5.03298 5.04232 5.16794 5.22019 5.31256 5.36945 5.39116 5.42751 5.47390 5.49230 5.58258 5.65057 5.68136 5.79297 5.80309 5.87733 5.88487 5.89552 5.95100 5.98461 6.02604 6.11058 6.18353 6.20710 6.22631 6.32125 6.43535 6.54587 6.70918 7.34478 7.47099 7.49153 7.53398 7.96617 8.33407 8.51009 9.08651 9.45070 9.94848 10.67189 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024807 B = 0.002223 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.452399 B =12590.233633 C =12892.156500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.044 4.044 3 H 0.078 0.922 4 C -0.133 4.133 5 C 0.512 3.488 6 O -0.546 6.546 7 N -0.591 5.591 8 C 0.110 3.890 9 C -0.131 4.131 10 C 0.052 3.948 11 N -0.506 5.506 12 C 0.044 3.956 13 C 0.406 3.594 14 O -0.597 6.597 15 N -0.557 5.557 16 C -0.302 4.302 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.898 5.898 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.051 3.949 25 C 0.118 3.882 26 C -0.148 4.148 27 C -0.180 4.180 28 C -0.182 4.182 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.393 0.607 43 H 0.272 0.728 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.091 0.909 51 H 0.092 0.908 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.803 -7.621 20.033 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.063 4.063 3 H 0.096 0.904 4 C -0.173 4.173 5 C 0.300 3.700 6 O -0.424 6.424 7 N -0.322 5.322 8 C -0.014 4.014 9 C -0.170 4.170 10 C -0.076 4.076 11 N -0.228 5.228 12 C -0.087 4.087 13 C 0.191 3.809 14 O -0.484 6.484 15 N -0.192 5.192 16 C -0.431 4.431 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.538 5.538 20 Si 0.756 3.244 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.078 4.078 25 C -0.005 4.005 26 C -0.166 4.166 27 C -0.217 4.217 28 C -0.219 4.219 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.105 0.895 48 H 0.121 0.879 49 H 0.112 0.888 50 H 0.109 0.891 51 H 0.111 0.889 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.459 -7.425 20.164 23.478 hybrid contribution 0.976 -0.178 -1.630 1.908 sum -8.483 -7.603 18.534 21.755 Atomic orbital electron populations 1.21907 0.94439 1.01237 1.03006 1.20461 0.96387 0.98917 0.90548 0.90371 1.21781 1.02969 0.99945 0.92624 1.20665 0.79076 0.85554 0.84672 1.90627 1.40908 1.24546 1.86329 1.47576 1.54280 1.24204 1.06180 1.21628 0.91412 0.85727 1.02655 1.21450 0.95831 1.00401 0.99323 1.20937 0.98326 0.91000 0.97304 1.61263 1.03349 1.12161 1.46024 1.22224 0.98094 0.96735 0.91681 1.21056 0.84427 0.87380 0.88045 1.90479 1.53183 1.27012 1.77748 1.42028 1.38320 1.25437 1.13445 1.19745 1.23843 1.10167 0.89383 0.87953 1.25299 0.96387 0.95891 1.00321 1.69619 1.28855 1.17949 1.37424 0.85808 0.78163 0.78958 0.81450 1.19268 1.20670 1.20681 1.22352 0.88644 1.03101 0.93723 1.22142 0.95978 0.96914 0.85455 1.22406 0.94696 1.01833 0.97698 1.23014 1.04756 0.97789 0.96115 1.22974 0.93938 1.01720 1.03275 0.93011 0.90491 0.93511 0.89281 0.88859 0.90584 0.90568 0.91471 0.90565 0.92330 0.92316 0.89249 0.89528 0.77377 0.91789 0.90788 0.91556 0.92296 0.89455 0.87936 0.88759 0.89058 0.88935 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.92 37.16 0.33 -1.13 16 2 C -0.04 -0.42 2.19 -90.62 -0.20 -0.62 16 3 H 0.08 0.89 7.71 -51.93 -0.40 0.49 16 4 C -0.13 -1.25 3.56 -27.88 -0.10 -1.35 16 5 C 0.51 6.58 7.34 -10.99 -0.08 6.50 16 6 O -0.55 -8.78 13.25 5.55 0.07 -8.71 16 7 N -0.59 -7.37 2.53 -171.96 -0.43 -7.81 16 8 C 0.11 1.13 5.22 -3.99 -0.02 1.11 16 9 C -0.13 -1.45 5.95 -28.34 -0.17 -1.62 16 10 C 0.05 0.78 4.08 -6.80 -0.03 0.76 16 11 N -0.51 -8.09 4.38 -240.77 -1.05 -9.14 16 12 C 0.04 0.77 5.48 -4.97 -0.03 0.74 16 13 C 0.41 9.01 7.10 -10.98 -0.08 8.94 16 14 O -0.60 -14.73 12.13 5.55 0.07 -14.67 16 15 N -0.56 -13.68 5.29 -10.96 -0.06 -13.74 16 16 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 17 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 20 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 C 0.05 0.82 4.13 -4.22 -0.02 0.80 16 25 C 0.12 1.63 6.49 -2.59 -0.02 1.61 16 26 C -0.15 -1.15 5.15 -90.62 -0.47 -1.62 16 27 C -0.18 -1.35 10.18 -26.69 -0.27 -1.62 16 28 C -0.18 -1.33 9.68 -26.69 -0.26 -1.59 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.94 5.96 -51.93 -0.31 0.63 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.69 7.30 -51.93 -0.38 0.31 16 33 H 0.09 0.81 6.25 -51.93 -0.32 0.48 16 34 H 0.08 0.59 6.18 -51.93 -0.32 0.27 16 35 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 36 H 0.07 0.76 7.42 -51.93 -0.39 0.37 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.92 7.54 -51.93 -0.39 0.53 16 39 H 0.06 1.03 6.03 -51.93 -0.31 0.71 16 40 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 41 H 0.09 1.39 7.92 -51.93 -0.41 0.98 16 42 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 43 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.07 1.26 7.47 -51.93 -0.39 0.87 16 45 H 0.07 1.18 6.07 -51.93 -0.32 0.86 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.09 1.33 6.96 -51.93 -0.36 0.97 16 48 H 0.10 0.73 8.11 -51.93 -0.42 0.31 16 49 H 0.09 0.74 8.05 -51.93 -0.42 0.33 16 50 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.09 0.59 8.14 -51.92 -0.42 0.16 16 52 H 0.10 0.73 7.59 -51.93 -0.39 0.34 16 LS Contribution 397.10 15.07 5.98 5.98 Total: -1.00 -30.71 397.10 -10.10 -40.81 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -8.74 Total: 11.85 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -1.64 Total: 3.09 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.82 Total: -54.03 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.14 Total: -23.37 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.71 -10.10 -40.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198266947.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.843 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds