Wall clock time and date at job start Tue Mar 31 2020 20:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46691 * 2 1 4 4 C 1.52999 * 109.47268 * 240.00069 * 2 1 3 5 5 C 1.50703 * 109.47209 * 64.99604 * 4 2 1 6 6 O 1.21284 * 119.99595 * 0.28095 * 5 4 2 7 7 N 1.34770 * 120.00080 * 179.97438 * 5 4 2 8 8 C 1.44676 * 118.54988 * 0.02562 * 7 5 4 9 9 C 1.54943 * 109.51989 * 269.08279 * 8 7 5 10 10 C 1.47544 * 109.73408 * 290.51570 * 9 8 7 11 11 N 1.46262 * 114.37355 * 62.21788 * 10 9 8 12 12 C 1.46903 * 110.99950 * 148.55613 * 11 10 9 13 13 C 1.50706 * 109.46876 * 64.05798 * 12 11 10 14 14 O 1.21289 * 120.00292 * 4.77181 * 13 12 11 15 15 N 1.34781 * 119.99590 * 184.77480 * 13 12 11 16 16 C 1.37094 * 119.99461 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00641 * 0.02562 * 16 15 13 18 18 C 1.38955 * 119.99716 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99854 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00062 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46994 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47383 * 120.00089 * 20 18 16 23 23 H 1.48508 * 109.47355 * 240.00373 * 20 18 16 24 24 C 1.44761 * 110.64373 * 272.25313 * 11 10 9 25 25 C 1.47777 * 118.54932 * 179.73621 * 7 5 4 26 26 C 1.52994 * 109.47350 * 119.99944 * 2 1 3 27 27 C 1.53004 * 117.50174 * 248.75057 * 26 2 1 28 28 C 1.53004 * 117.49937 * 180.08927 * 26 2 1 29 29 H 1.09001 * 109.46857 * 299.99824 * 1 2 3 30 30 H 1.09002 * 109.47388 * 60.00155 * 1 2 3 31 31 H 1.09002 * 109.46876 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47265 * 305.00139 * 4 2 1 33 33 H 1.08997 * 109.47502 * 184.99889 * 4 2 1 34 34 H 1.09005 * 109.45944 * 29.09913 * 8 7 5 35 35 H 1.09000 * 109.46503 * 149.06998 * 8 7 5 36 36 H 1.09000 * 109.42830 * 50.59818 * 9 8 7 37 37 H 1.09001 * 109.42715 * 170.44131 * 9 8 7 38 38 H 1.08997 * 108.50074 * 183.48493 * 10 9 8 39 39 H 1.09002 * 108.50257 * 300.95187 * 10 9 8 40 40 H 1.08995 * 109.47250 * 184.05945 * 12 11 10 41 41 H 1.09001 * 109.47047 * 304.06175 * 12 11 10 42 42 H 0.96996 * 119.99929 * 0.02562 * 15 13 12 43 43 H 0.97000 * 119.99925 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.43721 * 214.22490 * 24 11 10 45 45 H 1.08998 * 109.43893 * 334.14155 * 24 11 10 46 46 H 1.09005 * 109.06196 * 258.65104 * 25 7 5 47 47 H 1.08999 * 109.06087 * 17.57646 * 25 7 5 48 48 H 1.09004 * 115.55224 * 34.41817 * 26 2 1 49 49 H 1.09004 * 117.49389 * 359.97438 * 27 26 2 50 50 H 1.08997 * 117.50616 * 145.02214 * 27 26 2 51 51 H 1.09007 * 117.49666 * 214.97828 * 28 26 2 52 52 H 1.08990 * 117.49699 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0156 1.0898 -2.3630 7 7 1.9853 -0.3914 -3.7001 8 6 2.7368 -1.6236 -3.7988 9 6 4.2536 -1.3076 -3.7833 10 6 4.6345 -0.6316 -5.0382 11 7 3.9790 0.6583 -5.2520 12 6 4.8489 1.5726 -6.0040 13 6 5.0926 1.0141 -7.3824 14 8 4.5229 0.0038 -7.7369 15 7 5.9439 1.6374 -8.2211 16 6 6.1660 1.1291 -9.4748 17 1 5.6586 0.2295 -9.7905 18 6 7.0431 1.7719 -10.3397 19 7 7.6602 2.8668 -9.9558 20 14 7.3453 1.0798 -12.0482 21 1 6.5350 -0.1508 -12.2342 22 1 6.9549 2.0875 -13.0668 23 1 8.7857 0.7526 -12.2022 24 6 2.7092 0.4804 -5.9239 25 6 1.5726 0.3940 -4.8819 26 6 2.0400 -0.7212 1.2492 27 6 2.7393 0.1231 2.3165 28 6 3.5551 -0.8262 1.4352 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7197 -1.2952 33 1 3.1263 -0.7994 -1.2056 34 1 2.4913 -2.2674 -2.9541 35 1 2.4812 -2.1315 -4.7288 36 1 4.4799 -0.6575 -2.9382 37 1 4.8164 -2.2361 -3.6864 38 1 5.7132 -0.4749 -5.0331 39 1 4.3878 -1.2876 -5.8731 40 1 4.3671 2.5468 -6.0866 41 1 5.7999 1.6806 -5.4824 42 1 6.3998 2.4452 -7.9374 43 1 8.2722 3.3158 -10.5597 44 1 2.5288 1.3254 -6.5883 45 1 2.7329 -0.4405 -6.5065 46 1 0.7021 -0.0786 -5.3371 47 1 1.3036 1.4012 -4.5638 48 1 1.4319 -1.5594 1.5894 49 1 2.8363 1.1924 2.1284 50 1 2.5916 -0.1598 3.3587 51 1 3.9436 -1.7334 1.8982 52 1 4.1883 -0.3818 0.6675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198266947.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:33 Heat of formation + Delta-G solvation = -62.889832 kcal Electronic energy + Delta-G solvation = -30452.646642 eV Core-core repulsion = 26451.987416 eV Total energy + Delta-G solvation = -4000.659226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.55115 -40.62095 -38.98711 -38.28987 -36.35137 -35.58127 -34.24958 -33.50597 -33.33613 -30.90644 -28.80362 -27.70255 -26.94753 -25.71506 -24.48119 -23.19879 -22.80132 -22.05537 -20.95715 -20.73583 -19.86412 -19.57663 -18.07759 -17.90138 -17.45025 -16.96608 -16.57577 -16.36373 -16.21370 -16.01767 -15.71248 -15.50290 -15.41309 -15.01680 -14.65714 -14.46722 -14.21150 -13.86538 -13.80051 -13.72727 -13.51110 -13.26471 -12.95619 -12.86638 -12.67490 -12.45394 -12.41573 -12.34078 -12.24475 -12.15769 -12.09867 -12.04010 -11.80262 -11.67339 -11.63527 -11.41147 -11.01300 -10.86861 -10.78221 -10.48961 -10.04340 -9.48996 -9.15251 -8.49255 -5.99147 1.32634 1.38749 1.52295 1.77733 1.98739 2.14632 2.26123 2.91764 2.99020 3.16983 3.21125 3.61476 3.86615 3.88642 4.01249 4.04249 4.06518 4.13787 4.23439 4.25922 4.29068 4.37220 4.40055 4.53867 4.57132 4.59308 4.67050 4.72434 4.74199 4.78085 4.83198 4.84198 4.88481 4.93235 4.99415 5.08170 5.09410 5.11478 5.23256 5.26451 5.35198 5.37089 5.42237 5.47643 5.56315 5.68179 5.90017 6.03652 6.16862 6.54616 6.57802 7.08130 7.35199 7.51574 8.05007 8.66705 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024807 B = 0.002223 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.452399 B =12590.233633 C =12892.156500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 H 0.052 0.948 4 C -0.125 4.125 5 C 0.506 3.494 6 O -0.584 6.584 7 N -0.592 5.592 8 C 0.108 3.892 9 C -0.124 4.124 10 C 0.056 3.944 11 N -0.500 5.500 12 C 0.052 3.948 13 C 0.410 3.590 14 O -0.622 6.622 15 N -0.571 5.571 16 C -0.331 4.331 17 H 0.079 0.921 18 C -0.014 4.014 19 N -0.919 5.919 20 Si 0.992 3.008 21 H -0.273 1.273 22 H -0.272 1.272 23 H -0.271 1.271 24 C 0.060 3.940 25 C 0.127 3.873 26 C -0.146 4.146 27 C -0.188 4.188 28 C -0.177 4.177 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.030 0.970 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.395 0.605 43 H 0.278 0.722 44 H 0.057 0.943 45 H 0.046 0.954 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.116 0.884 49 H 0.083 0.917 50 H 0.103 0.897 51 H 0.107 0.893 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.506 -9.295 21.732 25.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.061 4.061 3 H 0.070 0.930 4 C -0.164 4.164 5 C 0.297 3.703 6 O -0.465 6.465 7 N -0.323 5.323 8 C -0.015 4.015 9 C -0.163 4.163 10 C -0.072 4.072 11 N -0.222 5.222 12 C -0.079 4.079 13 C 0.197 3.803 14 O -0.510 6.510 15 N -0.207 5.207 16 C -0.460 4.460 17 H 0.097 0.903 18 C -0.214 4.214 19 N -0.560 5.560 20 Si 0.816 3.184 21 H -0.198 1.198 22 H -0.197 1.197 23 H -0.196 1.196 24 C -0.070 4.070 25 C 0.003 3.997 26 C -0.164 4.164 27 C -0.225 4.225 28 C -0.214 4.214 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.134 0.866 49 H 0.102 0.898 50 H 0.121 0.879 51 H 0.125 0.875 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.155 -9.112 21.885 25.413 hybrid contribution 0.835 0.348 -2.120 2.305 sum -8.320 -8.764 19.765 23.167 Atomic orbital electron populations 1.21848 0.94797 1.01881 1.01719 1.20382 0.96069 0.97873 0.91740 0.92985 1.21807 1.03876 1.00390 0.90370 1.21332 0.78233 0.85282 0.85475 1.90621 1.42601 1.26416 1.86853 1.47684 1.54377 1.24657 1.05625 1.21816 0.90474 0.85075 1.04159 1.21424 0.96760 1.01208 0.96912 1.21015 0.97722 0.89982 0.98509 1.61459 1.03114 1.12751 1.44847 1.22275 0.99538 0.97362 0.88751 1.22003 0.82595 0.86473 0.89269 1.90470 1.53628 1.28140 1.78725 1.42108 1.39421 1.25918 1.13279 1.19674 1.25027 1.10246 0.91095 0.90305 1.26060 0.95718 0.96069 1.03558 1.69681 1.29105 1.18572 1.38663 0.84882 0.78254 0.78134 0.77133 1.19771 1.19748 1.19585 1.22222 0.89410 1.01271 0.94067 1.21903 0.95332 0.96798 0.85635 1.22332 0.95270 1.02024 0.96780 1.23076 1.05128 0.97415 0.96836 1.23031 0.93384 1.02016 1.02920 0.92808 0.93263 0.91825 0.86621 0.87455 0.86825 0.90998 0.90938 0.87820 0.93270 0.95155 0.87920 0.87596 0.77118 0.91293 0.92409 0.93599 0.91079 0.90973 0.86560 0.89799 0.87905 0.87474 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.92 71.98 0.64 -2.03 16 2 C -0.04 -0.72 2.19 -10.80 -0.02 -0.75 16 3 H 0.05 1.18 7.71 -2.38 -0.02 1.16 16 4 C -0.13 -1.99 3.56 29.85 0.11 -1.88 16 5 C 0.51 12.32 7.34 87.66 0.64 12.96 16 6 O -0.58 -18.85 13.25 -3.04 -0.04 -18.89 16 7 N -0.59 -13.92 2.53 -816.36 -2.06 -15.99 16 8 C 0.11 1.93 5.22 87.38 0.46 2.39 16 9 C -0.12 -2.43 5.95 29.55 0.18 -2.25 16 10 C 0.06 1.63 4.08 84.72 0.35 1.97 16 11 N -0.50 -15.86 4.38 -915.66 -4.01 -19.87 16 12 C 0.05 1.82 5.48 85.56 0.47 2.28 16 13 C 0.41 18.63 7.10 87.66 0.62 19.25 16 14 O -0.62 -31.67 12.13 -3.06 -0.04 -31.71 16 15 N -0.57 -28.73 5.29 -306.98 -1.62 -30.35 16 16 C -0.33 -18.44 9.68 84.04 0.81 -17.62 16 17 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 18 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 19 N -0.92 -49.42 13.05 21.66 0.28 -49.14 16 20 Si 0.99 42.56 29.55 68.60 2.03 44.59 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 24 C 0.06 1.95 4.13 87.19 0.36 2.31 16 25 C 0.13 3.50 6.49 86.62 0.56 4.07 16 26 C -0.15 -1.88 5.15 -10.79 -0.06 -1.93 16 27 C -0.19 -2.46 10.18 30.62 0.31 -2.15 16 28 C -0.18 -2.07 9.68 30.62 0.30 -1.77 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 1.20 5.96 -2.39 -0.01 1.18 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.12 1.27 7.30 -2.39 -0.02 1.25 16 33 H 0.11 1.45 6.25 -2.39 -0.01 1.44 16 34 H 0.11 1.23 6.18 -2.38 -0.01 1.21 16 35 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 36 H 0.07 1.40 7.42 -2.39 -0.02 1.38 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.05 1.51 7.54 -2.39 -0.02 1.49 16 39 H 0.03 1.07 6.03 -2.39 -0.01 1.05 16 40 H 0.10 3.32 8.07 -2.39 -0.02 3.30 16 41 H 0.11 3.30 7.92 -2.39 -0.02 3.28 16 42 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 43 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 44 H 0.06 2.04 7.47 -2.39 -0.02 2.02 16 45 H 0.05 1.69 6.07 -2.39 -0.01 1.67 16 46 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 47 H 0.07 2.24 6.96 -2.39 -0.02 2.23 16 48 H 0.12 1.22 8.11 -2.39 -0.02 1.20 16 49 H 0.08 1.26 8.05 -2.38 -0.02 1.25 16 50 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 52 H 0.09 1.16 7.59 -2.39 -0.02 1.14 16 Total: -1.00 -68.71 397.10 0.92 -67.79 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: 0.19 Total: 38.99 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 6.19 Total: 14.56 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -7.41 Total: -115.34 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.08 Total: -50.60 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -68.71 0.92 -67.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198266947.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.901 kcal (2) G-P(sol) polarization free energy of solvation -68.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds