Wall clock time and date at job start Tue Mar 31 2020 19:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 120.00093 * 2 1 4 4 H 1.09004 * 109.47231 * 0.02562 * 3 2 1 5 5 C 1.53004 * 109.47266 * 119.99605 * 3 2 1 6 6 C 1.52998 * 109.47284 * 239.99820 * 3 2 1 7 7 H 1.09004 * 109.47146 * 300.00248 * 6 3 2 8 8 C 1.53000 * 109.46825 * 59.99796 * 6 3 2 9 9 C 1.50702 * 109.47284 * 180.02562 * 6 3 2 10 10 O 1.21279 * 120.00172 * 334.91157 * 9 6 3 11 11 N 1.34779 * 119.99842 * 154.91620 * 9 6 3 12 12 C 1.46926 * 120.63053 * 4.92541 * 11 9 6 13 13 C 1.52755 * 109.01053 * 233.58217 * 12 11 9 14 14 C 1.53036 * 109.38320 * 305.59350 * 13 12 11 15 15 N 1.46906 * 109.46143 * 181.25717 * 14 13 12 16 16 C 1.46897 * 111.00054 * 84.92816 * 15 14 13 17 17 C 1.50699 * 109.47287 * 180.02562 * 16 15 14 18 18 O 1.21287 * 119.99974 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99946 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99900 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99961 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00089 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99794 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00236 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47196 * 89.99680 * 24 22 20 26 26 H 1.48497 * 109.47292 * 209.99900 * 24 22 20 27 27 H 1.48503 * 109.46872 * 329.99478 * 24 22 20 28 28 C 1.53043 * 109.53963 * 61.23790 * 14 13 12 29 29 C 1.46928 * 120.62949 * 185.20697 * 11 9 6 30 30 H 1.08007 * 119.99597 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00262 * 180.02562 * 1 2 3 32 32 H 1.08004 * 120.00097 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.46661 * 60.00060 * 5 3 2 34 34 H 1.08998 * 109.47096 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47270 * 299.99944 * 5 3 2 36 36 H 1.08998 * 109.47024 * 54.97862 * 8 6 3 37 37 H 1.08996 * 109.47244 * 294.97301 * 8 6 3 38 38 H 1.09009 * 109.46931 * 174.97444 * 8 6 3 39 39 H 1.09002 * 109.58895 * 353.42112 * 12 11 9 40 40 H 1.09006 * 109.58626 * 113.84256 * 12 11 9 41 41 H 1.08992 * 109.57009 * 185.55313 * 13 12 11 42 42 H 1.09009 * 109.35702 * 65.50082 * 13 12 11 43 43 H 1.08999 * 109.46409 * 301.21288 * 14 13 12 44 44 H 1.00907 * 110.99870 * 320.97982 * 15 14 13 45 45 H 1.09005 * 109.47528 * 300.00545 * 16 15 14 46 46 H 1.09003 * 109.47051 * 60.00291 * 16 15 14 47 47 H 0.96999 * 120.00250 * 359.97438 * 19 17 16 48 48 H 0.97006 * 120.00027 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.49820 * 178.68284 * 28 14 13 50 50 H 1.08998 * 109.52572 * 58.60359 * 28 14 13 51 51 H 1.08999 * 109.58394 * 246.15965 * 29 11 9 52 52 H 1.09002 * 109.58500 * 6.43636 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 1.2493 6 6 2.9432 1.3862 -1.2492 7 1 3.6515 0.5576 -1.2492 8 6 2.0635 1.3051 -2.4984 9 6 3.6972 2.6910 -1.2489 10 8 3.2549 3.6468 -0.6476 11 7 4.8630 2.7957 -1.9169 12 6 5.3581 1.6822 -2.7378 13 6 6.7827 1.3402 -2.3052 14 6 7.6486 2.6005 -2.3668 15 7 9.0261 2.2673 -1.9800 16 6 9.7880 1.7618 -3.1297 17 6 11.1926 1.4308 -2.6952 18 8 11.5262 1.5999 -1.5415 19 7 12.0783 0.9479 -3.5890 20 6 13.3562 0.6473 -3.1938 21 1 13.6532 0.7978 -2.1665 22 6 14.2695 0.1499 -4.1153 23 7 13.9082 -0.0328 -5.3655 24 14 16.0109 -0.2590 -3.5771 25 1 16.0709 -1.6730 -3.1276 26 1 16.9408 -0.0625 -4.7181 27 1 16.4055 0.6335 -2.4577 28 6 7.0898 3.6529 -1.4064 29 6 5.6660 4.0233 -1.8333 30 1 -0.5400 0.9354 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.6514 0.5577 1.2493 34 1 3.4884 2.3300 1.2491 35 1 2.3164 1.3285 2.1393 36 1 1.2979 2.0796 -2.4546 37 1 1.5874 0.3257 -2.5446 38 1 2.6788 1.4522 -3.3862 39 1 4.7165 0.8121 -2.5985 40 1 5.3583 1.9743 -3.7880 41 1 7.1947 0.5828 -2.9719 42 1 6.7684 0.9581 -1.2844 43 1 7.6425 2.9961 -3.3825 44 1 9.0378 1.6048 -1.2190 45 1 9.3071 0.8639 -3.5180 46 1 9.8184 2.5235 -3.9088 47 1 11.8116 0.8130 -4.5118 48 1 14.5457 -0.3804 -6.0088 49 1 7.7205 4.5415 -1.4334 50 1 7.0728 3.2496 -0.3939 51 1 5.6918 4.5102 -2.8082 52 1 5.2261 4.6984 -1.0993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202093066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:16 Heat of formation + Delta-G solvation = -64.887649 kcal Electronic energy + Delta-G solvation = -29500.850716 eV Core-core repulsion = 25500.104859 eV Total energy + Delta-G solvation = -4000.745858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.81865 -38.76240 -37.92392 -36.77334 -35.13951 -33.89047 -32.80783 -31.36740 -31.18516 -30.93270 -30.14723 -26.95693 -25.19206 -24.35158 -23.70205 -23.45467 -22.42870 -20.80432 -20.00640 -19.38259 -18.96019 -17.90281 -17.53944 -16.32522 -16.05782 -15.60598 -15.20585 -15.17781 -14.84317 -14.76867 -14.56808 -14.34839 -14.03426 -13.94444 -13.89492 -13.65610 -13.51287 -13.06899 -12.67144 -12.60561 -12.54686 -12.40153 -12.21753 -12.07444 -11.88010 -11.60240 -11.52582 -11.48963 -11.40054 -11.10200 -11.06163 -11.05354 -10.89195 -10.65792 -10.40898 -10.23548 -9.82742 -9.69838 -9.52998 -8.90571 -8.48685 -8.06674 -7.97754 -6.43811 -3.84601 1.90912 2.41423 2.74218 3.16320 3.25199 3.31279 3.88393 4.04213 4.09724 4.26515 4.29250 4.43358 4.60550 4.65691 4.77266 4.79115 4.88607 4.88939 5.04724 5.07549 5.12726 5.19980 5.22472 5.23758 5.27278 5.34173 5.37714 5.43766 5.50540 5.51869 5.54271 5.64030 5.71435 5.72570 5.75213 5.84068 5.91963 5.95474 5.97168 6.00507 6.14094 6.26436 6.26987 6.35375 6.43605 7.15268 7.20510 7.53361 7.62676 7.95563 8.04367 8.59132 9.15984 9.52142 10.03616 10.73875 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.001873 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.982936 B =14946.554627 C =15251.110282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C -0.048 4.048 4 H 0.085 0.915 5 C -0.148 4.148 6 C -0.105 4.105 7 H 0.094 0.906 8 C -0.141 4.141 9 C 0.523 3.477 10 O -0.541 6.541 11 N -0.610 5.610 12 C 0.109 3.891 13 C -0.170 4.170 14 C 0.089 3.911 15 N -0.663 5.663 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.269 1.269 28 C -0.120 4.120 29 C 0.112 3.888 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.350 0.650 45 H 0.043 0.957 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.085 0.915 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.935 0.568 3.058 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.163 4.163 3 C -0.066 4.066 4 H 0.103 0.897 5 C -0.205 4.205 6 C -0.126 4.126 7 H 0.112 0.888 8 C -0.199 4.199 9 C 0.312 3.688 10 O -0.418 6.418 11 N -0.344 5.344 12 C -0.015 4.015 13 C -0.210 4.210 14 C -0.022 4.022 15 N -0.294 5.294 16 C -0.082 4.082 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.159 4.159 29 C -0.011 4.011 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.170 0.830 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.104 0.896 50 H 0.085 0.915 51 H 0.085 0.915 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -25.558 1.782 3.924 25.919 hybrid contribution 0.515 -1.425 -0.665 1.654 sum -25.044 0.357 3.259 25.257 Atomic orbital electron populations 1.23863 0.95902 1.01838 1.01237 1.22905 0.95934 0.97904 0.99509 1.20190 0.96960 0.96026 0.93457 0.89715 1.21846 0.99515 1.02446 0.96730 1.21385 0.97902 0.95884 0.97440 0.88795 1.21763 0.99571 1.03124 0.95438 1.20581 0.80514 0.90043 0.77695 1.90673 1.67242 1.39857 1.44040 1.48173 1.21304 1.16540 1.48368 1.21688 0.95422 0.89526 0.94822 1.22672 0.95532 0.99913 1.02834 1.21580 0.87408 0.93966 0.99229 1.60180 1.10436 1.49905 1.08830 1.21705 0.93892 0.98841 0.93738 1.19825 0.86676 0.84139 0.86838 1.90527 1.79420 1.57853 1.18928 1.41866 1.10736 1.56490 1.10953 1.19705 0.86274 1.39643 0.97279 0.87929 1.25263 1.00377 0.97362 0.94956 1.69610 1.36500 1.45734 1.02481 0.85854 0.81407 0.78867 0.78150 1.20433 1.20910 1.19398 1.21888 0.94351 1.00051 0.99629 1.21659 0.90684 0.86416 1.02342 0.88584 0.88481 0.87336 0.92808 0.91546 0.92399 0.91898 0.91117 0.92156 0.89531 0.91005 0.90397 0.91092 0.90345 0.83032 0.93931 0.89646 0.77483 0.91875 0.89645 0.91468 0.91487 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.19 14.32 29.02 0.42 -0.77 16 2 C -0.14 -0.97 7.60 -36.02 -0.27 -1.24 16 3 C -0.05 -0.39 1.90 -91.77 -0.17 -0.56 16 4 H 0.08 0.81 7.51 -51.93 -0.39 0.42 16 5 C -0.15 -1.31 8.89 37.16 0.33 -0.98 16 6 C -0.10 -0.82 1.45 -91.77 -0.13 -0.95 16 7 H 0.09 0.63 6.48 -51.93 -0.34 0.29 16 8 C -0.14 -0.92 8.61 37.16 0.32 -0.60 16 9 C 0.52 5.50 6.00 -10.98 -0.07 5.44 16 10 O -0.54 -7.48 14.45 5.56 0.08 -7.40 16 11 N -0.61 -5.75 2.98 -173.03 -0.52 -6.26 16 12 C 0.11 0.82 5.79 -3.94 -0.02 0.80 16 13 C -0.17 -1.54 5.32 -26.84 -0.14 -1.69 16 14 C 0.09 0.99 2.43 -67.67 -0.16 0.82 16 15 N -0.66 -10.10 5.87 -107.94 -0.63 -10.73 16 16 C 0.05 0.85 5.96 -4.98 -0.03 0.82 16 17 C 0.44 10.19 7.82 -10.99 -0.09 10.10 16 18 O -0.58 -15.71 15.78 5.55 0.09 -15.62 16 19 N -0.56 -14.08 5.29 -10.97 -0.06 -14.14 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 24 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 C -0.12 -1.29 5.69 -26.61 -0.15 -1.44 16 29 C 0.11 1.10 6.42 -3.71 -0.02 1.07 16 30 H 0.10 0.59 7.83 -52.48 -0.41 0.18 16 31 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 32 H 0.11 0.64 8.06 -52.48 -0.42 0.22 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.72 6.46 -51.93 -0.34 0.39 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.39 7.40 -51.93 -0.38 0.00 16 38 H 0.06 0.36 7.44 -51.92 -0.39 -0.03 16 39 H 0.09 0.52 5.15 -51.93 -0.27 0.25 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.70 7.42 -51.93 -0.39 0.32 16 42 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.08 0.84 7.80 -51.93 -0.40 0.44 16 44 H 0.35 5.62 8.18 -39.29 -0.32 5.30 16 45 H 0.04 0.63 7.41 -51.93 -0.38 0.24 16 46 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 47 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 49 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.09 1.02 7.04 -51.93 -0.37 0.66 16 LS Contribution 410.46 15.07 6.19 6.19 Total: -1.00 -32.25 410.46 -8.45 -40.70 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -8.85 Total: 12.06 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -0.44 Total: 2.88 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.48 Total: -54.68 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.17 Total: -23.02 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.25 -8.45 -40.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202093066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.189 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds