Wall clock time and date at job start Tue Mar 31 2020 19:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 120.00093 * 2 1 4 4 H 1.09004 * 109.47231 * 0.02562 * 3 2 1 5 5 C 1.53004 * 109.47266 * 119.99605 * 3 2 1 6 6 C 1.52998 * 109.47284 * 239.99820 * 3 2 1 7 7 H 1.09004 * 109.47146 * 300.00248 * 6 3 2 8 8 C 1.53000 * 109.46825 * 59.99796 * 6 3 2 9 9 C 1.50702 * 109.47284 * 180.02562 * 6 3 2 10 10 O 1.21279 * 120.00172 * 334.91157 * 9 6 3 11 11 N 1.34779 * 119.99842 * 154.91620 * 9 6 3 12 12 C 1.46926 * 120.63053 * 4.92541 * 11 9 6 13 13 C 1.52755 * 109.01053 * 233.58217 * 12 11 9 14 14 C 1.53036 * 109.38320 * 305.59350 * 13 12 11 15 15 N 1.46906 * 109.46143 * 181.25717 * 14 13 12 16 16 C 1.46897 * 111.00054 * 84.92816 * 15 14 13 17 17 C 1.50699 * 109.47287 * 180.02562 * 16 15 14 18 18 O 1.21287 * 119.99974 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99946 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99900 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99961 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00089 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99794 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00236 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47196 * 89.99680 * 24 22 20 26 26 H 1.48497 * 109.47292 * 209.99900 * 24 22 20 27 27 H 1.48503 * 109.46872 * 329.99478 * 24 22 20 28 28 C 1.53043 * 109.53963 * 61.23790 * 14 13 12 29 29 C 1.46928 * 120.62949 * 185.20697 * 11 9 6 30 30 H 1.08007 * 119.99597 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00262 * 180.02562 * 1 2 3 32 32 H 1.08004 * 120.00097 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.46661 * 60.00060 * 5 3 2 34 34 H 1.08998 * 109.47096 * 179.97438 * 5 3 2 35 35 H 1.08999 * 109.47270 * 299.99944 * 5 3 2 36 36 H 1.08998 * 109.47024 * 54.97862 * 8 6 3 37 37 H 1.08996 * 109.47244 * 294.97301 * 8 6 3 38 38 H 1.09009 * 109.46931 * 174.97444 * 8 6 3 39 39 H 1.09002 * 109.58895 * 353.42112 * 12 11 9 40 40 H 1.09006 * 109.58626 * 113.84256 * 12 11 9 41 41 H 1.08992 * 109.57009 * 185.55313 * 13 12 11 42 42 H 1.09009 * 109.35702 * 65.50082 * 13 12 11 43 43 H 1.08999 * 109.46409 * 301.21288 * 14 13 12 44 44 H 1.00907 * 110.99870 * 320.97982 * 15 14 13 45 45 H 1.09005 * 109.47528 * 300.00545 * 16 15 14 46 46 H 1.09003 * 109.47051 * 60.00291 * 16 15 14 47 47 H 0.96999 * 120.00250 * 359.97438 * 19 17 16 48 48 H 0.97006 * 120.00027 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.49820 * 178.68284 * 28 14 13 50 50 H 1.08998 * 109.52572 * 58.60359 * 28 14 13 51 51 H 1.08999 * 109.58394 * 246.15965 * 29 11 9 52 52 H 1.09002 * 109.58500 * 6.43636 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 1.2493 6 6 2.9432 1.3862 -1.2492 7 1 3.6515 0.5576 -1.2492 8 6 2.0635 1.3051 -2.4984 9 6 3.6972 2.6910 -1.2489 10 8 3.2549 3.6468 -0.6476 11 7 4.8630 2.7957 -1.9169 12 6 5.3581 1.6822 -2.7378 13 6 6.7827 1.3402 -2.3052 14 6 7.6486 2.6005 -2.3668 15 7 9.0261 2.2673 -1.9800 16 6 9.7880 1.7618 -3.1297 17 6 11.1926 1.4308 -2.6952 18 8 11.5262 1.5999 -1.5415 19 7 12.0783 0.9479 -3.5890 20 6 13.3562 0.6473 -3.1938 21 1 13.6532 0.7978 -2.1665 22 6 14.2695 0.1499 -4.1153 23 7 13.9082 -0.0328 -5.3655 24 14 16.0109 -0.2590 -3.5771 25 1 16.0709 -1.6730 -3.1276 26 1 16.9408 -0.0625 -4.7181 27 1 16.4055 0.6335 -2.4577 28 6 7.0898 3.6529 -1.4064 29 6 5.6660 4.0233 -1.8333 30 1 -0.5400 0.9354 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.6514 0.5577 1.2493 34 1 3.4884 2.3300 1.2491 35 1 2.3164 1.3285 2.1393 36 1 1.2979 2.0796 -2.4546 37 1 1.5874 0.3257 -2.5446 38 1 2.6788 1.4522 -3.3862 39 1 4.7165 0.8121 -2.5985 40 1 5.3583 1.9743 -3.7880 41 1 7.1947 0.5828 -2.9719 42 1 6.7684 0.9581 -1.2844 43 1 7.6425 2.9961 -3.3825 44 1 9.0378 1.6048 -1.2190 45 1 9.3071 0.8639 -3.5180 46 1 9.8184 2.5235 -3.9088 47 1 11.8116 0.8130 -4.5118 48 1 14.5457 -0.3804 -6.0088 49 1 7.7205 4.5415 -1.4334 50 1 7.0728 3.2496 -0.3939 51 1 5.6918 4.5102 -2.8082 52 1 5.2261 4.6984 -1.0993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202093066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:15 Heat of formation + Delta-G solvation = -86.545189 kcal Electronic energy + Delta-G solvation = -29501.789858 eV Core-core repulsion = 25500.104859 eV Total energy + Delta-G solvation = -4001.684999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.59866 -40.22570 -39.13691 -37.50644 -36.32568 -35.75191 -33.52110 -33.24404 -32.04289 -31.86568 -30.78438 -28.37024 -26.47593 -25.40807 -24.53821 -24.32008 -23.23378 -21.64226 -21.07665 -20.55215 -19.97133 -19.74017 -18.35660 -17.65527 -17.07294 -16.79841 -16.39133 -16.19072 -16.07954 -15.78065 -15.52632 -15.45241 -15.22874 -15.00925 -14.82554 -14.71174 -14.32213 -13.94047 -13.92839 -13.57241 -13.49652 -13.32710 -13.18762 -13.08515 -13.00098 -12.85914 -12.65243 -12.58253 -12.41156 -12.24131 -12.12531 -12.07808 -11.88040 -11.66572 -11.59413 -11.54299 -11.49617 -10.63144 -10.33550 -10.21162 -10.00676 -9.69991 -9.24308 -8.46305 -5.94723 1.38160 1.40349 1.42292 1.54677 1.63455 2.01797 2.06619 2.29543 2.91680 3.21219 3.43095 3.51509 3.68009 3.72949 3.92650 4.03047 4.06037 4.07316 4.21282 4.31627 4.33568 4.35745 4.38266 4.47767 4.50029 4.56823 4.61085 4.62252 4.67670 4.73929 4.78764 4.80840 4.89629 4.92691 4.97454 5.03903 5.04422 5.17219 5.23337 5.26124 5.26614 5.33245 5.41678 5.56762 5.77309 5.92627 5.94217 6.15111 6.39107 6.43117 6.61271 7.13648 7.17245 7.57595 8.13315 8.70902 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022377 B = 0.001873 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.982936 B =14946.554627 C =15251.110282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.148 4.148 3 C -0.045 4.045 4 H 0.064 0.936 5 C -0.145 4.145 6 C -0.100 4.100 7 H 0.112 0.888 8 C -0.137 4.137 9 C 0.518 3.482 10 O -0.582 6.582 11 N -0.610 5.610 12 C 0.109 3.891 13 C -0.162 4.162 14 C 0.091 3.909 15 N -0.680 5.680 16 C 0.068 3.932 17 C 0.436 3.564 18 O -0.626 6.626 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.275 1.275 28 C -0.112 4.112 29 C 0.116 3.884 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.343 0.657 45 H 0.072 0.928 46 H 0.104 0.896 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.077 0.923 50 H 0.051 0.949 51 H 0.082 0.918 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.854 -0.984 1.476 26.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.166 4.166 3 C -0.064 4.064 4 H 0.083 0.917 5 C -0.203 4.203 6 C -0.121 4.121 7 H 0.130 0.870 8 C -0.195 4.195 9 C 0.308 3.692 10 O -0.462 6.462 11 N -0.342 5.342 12 C -0.013 4.013 13 C -0.202 4.202 14 C -0.018 4.018 15 N -0.311 5.311 16 C -0.065 4.065 17 C 0.224 3.776 18 O -0.513 6.513 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.200 1.200 28 C -0.151 4.151 29 C -0.007 4.007 30 H 0.109 0.891 31 H 0.130 0.870 32 H 0.141 0.859 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.162 0.838 45 H 0.090 0.910 46 H 0.122 0.878 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.070 0.930 51 H 0.101 0.899 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.495 0.219 2.299 26.596 hybrid contribution 0.759 -0.884 -0.124 1.172 sum -25.736 -0.665 2.175 25.837 Atomic orbital electron populations 1.23999 0.95879 1.02369 1.00283 1.22864 0.96024 0.97398 1.00338 1.20126 0.96621 0.96367 0.93316 0.91745 1.21806 0.99667 1.01337 0.97459 1.21417 0.98087 0.94665 0.97924 0.87015 1.21755 0.99182 1.03569 0.94949 1.21123 0.80687 0.90536 0.76898 1.90656 1.68373 1.41463 1.45753 1.48270 1.20893 1.16841 1.48193 1.21865 0.94570 0.89613 0.95255 1.22580 0.96103 0.98770 1.02776 1.21639 0.85584 0.94996 0.99630 1.60153 1.12888 1.49733 1.08298 1.21554 0.89852 1.00669 0.94389 1.20981 0.88725 0.82030 0.85906 1.90496 1.80818 1.59099 1.20848 1.41928 1.10431 1.57176 1.11481 1.19646 0.88213 1.41853 0.96667 0.90497 1.26007 1.03681 0.96595 0.94917 1.69662 1.37759 1.45542 1.02995 0.84951 0.77002 0.78668 0.77863 1.19576 1.19533 1.19997 1.21782 0.94840 0.99640 0.98873 1.21552 0.89843 0.86686 1.02598 0.89069 0.86982 0.85944 0.91859 0.94130 0.92221 0.93180 0.89551 0.91115 0.87373 0.89163 0.89450 0.91866 0.89105 0.83845 0.91045 0.87834 0.76889 0.91296 0.90442 0.92992 0.89942 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 14.32 67.78 0.97 -1.03 16 2 C -0.15 -1.70 7.60 25.65 0.19 -1.51 16 3 C -0.05 -0.71 1.90 -11.54 -0.02 -0.73 16 4 H 0.06 1.27 7.51 -2.38 -0.02 1.25 16 5 C -0.15 -2.57 8.89 71.98 0.64 -1.93 16 6 C -0.10 -1.39 1.45 -11.54 -0.02 -1.41 16 7 H 0.11 1.16 6.48 -2.38 -0.02 1.15 16 8 C -0.14 -1.47 8.61 71.98 0.62 -0.85 16 9 C 0.52 10.56 6.00 87.66 0.53 11.08 16 10 O -0.58 -16.61 14.45 -3.03 -0.04 -16.66 16 11 N -0.61 -10.56 2.98 -819.74 -2.44 -13.00 16 12 C 0.11 1.29 5.79 86.22 0.50 1.79 16 13 C -0.16 -2.52 5.32 30.52 0.16 -2.36 16 14 C 0.09 1.85 2.43 44.94 0.11 1.96 16 15 N -0.68 -19.98 5.87 -495.43 -2.91 -22.89 16 16 C 0.07 2.14 5.96 85.56 0.51 2.65 16 17 C 0.44 20.22 7.82 87.66 0.69 20.90 16 18 O -0.63 -34.46 15.78 -3.05 -0.05 -34.50 16 19 N -0.57 -28.77 5.29 -306.99 -1.62 -30.40 16 20 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 21 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 23 N -0.92 -48.73 13.05 21.66 0.28 -48.45 16 24 Si 0.99 42.56 29.55 68.60 2.03 44.58 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 28 C -0.11 -2.35 5.69 30.67 0.17 -2.18 16 29 C 0.12 2.20 6.42 86.36 0.55 2.76 16 30 H 0.09 1.05 7.83 -2.91 -0.02 1.03 16 31 H 0.11 0.86 8.06 -2.91 -0.02 0.84 16 32 H 0.12 1.09 8.06 -2.91 -0.02 1.07 16 33 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.04 0.92 6.46 -2.39 -0.02 0.91 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.09 0.68 7.40 -2.39 -0.02 0.66 16 38 H 0.07 0.62 7.44 -2.38 -0.02 0.60 16 39 H 0.11 0.86 5.15 -2.39 -0.01 0.85 16 40 H 0.09 0.82 8.14 -2.38 -0.02 0.81 16 41 H 0.09 1.25 7.42 -2.39 -0.02 1.23 16 42 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.09 1.67 7.80 -2.39 -0.02 1.65 16 44 H 0.34 10.89 8.18 -89.69 -0.73 10.15 16 45 H 0.07 1.89 7.41 -2.38 -0.02 1.87 16 46 H 0.10 2.96 8.05 -2.39 -0.02 2.94 16 47 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 48 H 0.28 13.78 8.31 -92.70 -0.77 13.01 16 49 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 52 H 0.08 1.72 7.04 -2.39 -0.02 1.71 16 Total: -1.00 -71.72 410.46 1.58 -70.14 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: -0.55 Total: 40.20 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 6.89 Total: 10.98 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -6.69 Total: -114.74 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -0.09 Total: -51.16 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -71.72 1.58 -70.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202093066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.408 kcal (2) G-P(sol) polarization free energy of solvation -71.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds