Wall clock time and date at job start Tue Mar 31 2020 19:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50693 * 120.00246 * 2 1 4 4 H 1.09003 * 109.47178 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.46910 * 120.00101 * 3 2 1 6 6 C 1.53001 * 109.47347 * 240.00619 * 3 2 1 7 7 H 1.09003 * 109.46581 * 299.99724 * 6 3 2 8 8 C 1.53004 * 109.47287 * 180.02562 * 6 3 2 9 9 C 1.50694 * 109.47089 * 59.99709 * 6 3 2 10 10 O 1.21276 * 120.00342 * 23.03347 * 9 6 3 11 11 N 1.34779 * 119.99738 * 203.02665 * 9 6 3 12 12 C 1.46928 * 120.63037 * 4.58831 * 11 9 6 13 13 C 1.53628 * 108.54113 * 126.36646 * 12 11 9 14 14 C 1.53042 * 109.24259 * 54.85612 * 13 12 11 15 15 N 1.46897 * 109.45798 * 178.48922 * 14 13 12 16 16 C 1.46898 * 111.00340 * 275.06564 * 15 14 13 17 17 C 1.50698 * 109.47301 * 180.02562 * 16 15 14 18 18 O 1.21291 * 119.99915 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00063 * 180.02562 * 17 16 15 20 20 C 1.37093 * 120.00266 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99793 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00164 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00014 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99842 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47532 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47354 * 120.00000 * 24 22 20 27 27 H 1.48499 * 109.46937 * 239.99314 * 24 22 20 28 28 C 1.53042 * 109.53820 * 298.50868 * 14 13 12 29 29 C 1.46926 * 120.62797 * 184.86259 * 11 9 6 30 30 H 1.08007 * 119.99359 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.00189 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.99668 * 179.73157 * 2 1 3 33 33 H 1.08996 * 109.47585 * 299.99788 * 5 3 2 34 34 H 1.08997 * 109.46912 * 60.00677 * 5 3 2 35 35 H 1.09007 * 109.47198 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.46775 * 185.92069 * 8 6 3 37 37 H 1.09001 * 109.46361 * 305.92273 * 8 6 3 38 38 H 1.09004 * 109.47310 * 65.92039 * 8 6 3 39 39 H 1.09001 * 109.58618 * 246.19637 * 12 11 9 40 40 H 1.08997 * 109.58927 * 6.62632 * 12 11 9 41 41 H 1.08997 * 109.63291 * 294.86403 * 13 12 11 42 42 H 1.09004 * 109.42808 * 174.72441 * 13 12 11 43 43 H 1.08992 * 109.44822 * 58.52320 * 14 13 12 44 44 H 1.00905 * 110.99946 * 151.10765 * 15 14 13 45 45 H 1.08995 * 109.47253 * 300.00263 * 16 15 14 46 46 H 1.09004 * 109.47113 * 59.99965 * 16 15 14 47 47 H 0.97008 * 119.99834 * 359.97438 * 19 17 16 48 48 H 0.96999 * 120.00248 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.49691 * 301.41557 * 28 14 13 50 50 H 1.08995 * 109.50022 * 181.31880 * 28 14 13 51 51 H 1.08994 * 109.59100 * 353.38156 * 29 11 9 52 52 H 1.09004 * 109.58207 * 113.66113 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1336 0.0005 5 6 2.9432 1.3860 1.2492 6 6 2.9431 1.3861 -1.2493 7 1 3.6514 0.5576 -1.2493 8 6 3.7087 2.7109 -1.2490 9 6 2.0766 1.3064 -2.4797 10 8 0.9045 1.6110 -2.4167 11 7 2.6045 0.8966 -3.6501 12 6 3.9956 0.4291 -3.7211 13 6 4.0105 -0.9637 -4.3691 14 6 3.3000 -0.8978 -5.7230 15 7 3.3432 -2.2192 -6.3632 16 6 4.5997 -2.4062 -7.1008 17 6 4.6072 -3.7695 -7.7429 18 8 3.6589 -4.5122 -7.6004 19 7 5.6677 -4.1636 -8.4754 20 6 5.6744 -5.4037 -9.0599 21 1 4.8296 -6.0646 -8.9338 22 6 6.7680 -5.8101 -9.8147 23 7 7.7956 -5.0057 -9.9685 24 14 6.7766 -7.4995 -10.6117 25 1 5.5107 -8.2056 -10.2892 26 1 6.9002 -7.3515 -12.0841 27 1 7.9263 -8.2846 -10.0950 28 6 1.8427 -0.4786 -5.5165 29 6 1.8015 0.9144 -4.8804 30 1 -0.5399 0.9354 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0044 33 1 2.3166 1.3283 2.1392 34 1 3.6515 0.5575 1.2491 35 1 3.4886 2.3297 1.2490 36 1 4.2534 2.8159 -2.1872 37 1 3.0053 3.5368 -1.1426 38 1 4.4126 2.7236 -0.4168 39 1 4.5835 1.1217 -4.3236 40 1 4.4132 0.3705 -2.7160 41 1 3.4956 -1.6741 -3.7223 42 1 5.0419 -1.2849 -4.5147 43 1 3.8006 -0.1690 -6.3604 44 1 2.5459 -2.3549 -6.9667 45 1 4.6854 -1.6412 -7.8724 46 1 5.4408 -2.3237 -6.4124 47 1 6.4260 -3.5695 -8.5896 48 1 8.5588 -5.2893 -10.4957 49 1 1.3482 -1.1936 -4.8588 50 1 1.3312 -0.4545 -6.4786 51 1 0.7710 1.1763 -4.6405 52 1 2.2126 1.6476 -5.5744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202093067.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:18 Heat of formation + Delta-G solvation = -84.213311 kcal Electronic energy + Delta-G solvation = -29593.632956 eV Core-core repulsion = 25592.049074 eV Total energy + Delta-G solvation = -4001.583881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.50922 -40.21946 -39.08048 -37.39448 -36.31508 -35.75427 -33.71279 -33.27085 -32.24729 -31.91346 -29.99561 -28.37087 -26.64960 -25.96448 -24.64059 -24.26638 -22.62650 -21.43771 -21.07399 -20.62308 -19.91491 -19.69917 -18.34288 -17.72631 -17.17335 -16.79569 -16.47613 -16.34513 -16.12952 -15.77468 -15.52326 -15.36753 -15.21168 -15.03130 -14.80669 -14.61634 -14.22522 -13.92073 -13.84011 -13.55649 -13.51172 -13.29982 -13.15720 -13.02929 -12.88663 -12.72728 -12.67541 -12.56178 -12.45504 -12.39969 -12.17376 -12.12017 -11.86210 -11.55567 -11.51349 -11.44778 -11.40514 -10.60030 -10.34142 -10.16876 -10.01527 -9.63259 -9.32347 -8.47149 -5.95556 1.36255 1.41871 1.42780 1.55764 1.70284 2.03977 2.05430 2.28958 2.89541 3.20264 3.44796 3.52951 3.72189 3.81654 3.82792 3.89435 4.09936 4.19595 4.26761 4.30559 4.34300 4.37527 4.42434 4.46423 4.54089 4.58368 4.63059 4.65613 4.66386 4.74175 4.80197 4.85345 4.86570 4.97273 5.00188 5.03178 5.08713 5.15994 5.16431 5.36862 5.39333 5.41392 5.43401 5.57617 5.77151 5.91815 5.95240 6.14199 6.39501 6.45776 6.60319 7.12870 7.23982 7.56468 8.12149 8.70379 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021997 B = 0.001908 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.587352 B =14669.222634 C =14713.845799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 C -0.045 4.045 4 H 0.064 0.936 5 C -0.140 4.140 6 C -0.101 4.101 7 H 0.112 0.888 8 C -0.139 4.139 9 C 0.515 3.485 10 O -0.577 6.577 11 N -0.612 5.612 12 C 0.108 3.892 13 C -0.121 4.121 14 C 0.090 3.910 15 N -0.681 5.681 16 C 0.068 3.932 17 C 0.436 3.564 18 O -0.626 6.626 19 N -0.573 5.573 20 C -0.333 4.333 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.270 1.270 28 C -0.127 4.127 29 C 0.119 3.881 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.055 0.945 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.343 0.657 45 H 0.067 0.933 46 H 0.106 0.894 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.054 0.946 50 H 0.080 0.920 51 H 0.076 0.924 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.454 19.221 18.353 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.178 4.178 3 C -0.064 4.064 4 H 0.082 0.918 5 C -0.197 4.197 6 C -0.122 4.122 7 H 0.130 0.870 8 C -0.196 4.196 9 C 0.305 3.695 10 O -0.457 6.457 11 N -0.345 5.345 12 C -0.014 4.014 13 C -0.160 4.160 14 C -0.019 4.019 15 N -0.314 5.314 16 C -0.065 4.065 17 C 0.224 3.776 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.165 4.165 29 C -0.005 4.005 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.162 0.838 45 H 0.085 0.915 46 H 0.124 0.876 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.099 0.901 51 H 0.095 0.905 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.287 18.547 18.925 26.843 hybrid contribution -0.113 -0.444 -1.602 1.666 sum -4.400 18.103 17.323 25.439 Atomic orbital electron populations 1.23816 0.96535 1.01297 1.00586 1.23019 0.96028 0.98509 1.00205 1.20171 0.96619 0.95262 0.94340 0.91760 1.21827 0.99309 1.03193 0.95400 1.21448 0.97420 1.02325 0.91038 0.87047 1.21797 1.00010 0.93730 1.04098 1.21172 0.87898 0.75424 0.85016 1.90652 1.18494 1.51047 1.85470 1.48257 1.14117 1.64126 1.07955 1.22117 0.81099 0.94601 1.03603 1.21999 1.01528 0.96912 0.95602 1.21579 0.96011 0.88461 0.95827 1.60117 1.03443 1.30795 1.37048 1.21571 0.95058 0.92529 0.97293 1.20955 0.83398 0.90635 0.82603 1.90497 1.37447 1.57706 1.65586 1.41936 1.17835 1.16053 1.45205 1.19674 1.03995 0.93633 1.28949 0.90525 1.26017 0.94437 1.03177 0.97633 1.69665 1.07355 1.38009 1.40951 0.84889 0.78233 0.77291 0.78031 1.19972 1.19572 1.19549 1.21990 0.96174 0.96847 1.01526 1.21489 0.96949 0.96391 0.85639 0.89472 0.88709 0.87153 0.92556 0.91479 0.90599 0.91251 0.92954 0.88822 0.89031 0.87247 0.92604 0.89915 0.92132 0.83779 0.91499 0.87558 0.76882 0.91276 0.92683 0.90126 0.90536 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.88 13.70 67.77 0.93 -2.95 16 2 C -0.16 -2.97 7.80 25.64 0.20 -2.77 16 3 C -0.04 -0.69 1.90 -11.54 -0.02 -0.71 16 4 H 0.06 1.23 7.52 -2.39 -0.02 1.21 16 5 C -0.14 -1.40 8.82 71.98 0.64 -0.76 16 6 C -0.10 -1.38 1.50 -11.54 -0.02 -1.40 16 7 H 0.11 1.15 6.16 -2.39 -0.01 1.14 16 8 C -0.14 -1.30 8.64 71.98 0.62 -0.68 16 9 C 0.52 10.60 6.25 87.65 0.55 11.14 16 10 O -0.58 -16.39 14.53 -3.02 -0.04 -16.43 16 11 N -0.61 -10.88 2.97 -818.06 -2.43 -13.30 16 12 C 0.11 1.38 6.11 86.51 0.53 1.91 16 13 C -0.12 -2.24 5.60 30.82 0.17 -2.07 16 14 C 0.09 1.93 2.45 44.94 0.11 2.04 16 15 N -0.68 -20.64 5.93 -495.46 -2.94 -23.58 16 16 C 0.07 2.20 5.96 85.56 0.51 2.71 16 17 C 0.44 20.48 7.82 87.66 0.69 21.16 16 18 O -0.63 -34.78 15.78 -3.06 -0.05 -34.83 16 19 N -0.57 -29.01 5.29 -306.99 -1.62 -30.63 16 20 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 21 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 23 N -0.92 -48.91 13.05 21.66 0.28 -48.63 16 24 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 C -0.13 -2.62 5.36 30.67 0.16 -2.46 16 29 C 0.12 2.22 6.44 86.36 0.56 2.78 16 30 H 0.09 1.95 7.83 -2.91 -0.02 1.92 16 31 H 0.09 1.86 8.06 -2.91 -0.02 1.83 16 32 H 0.11 1.89 8.06 -2.91 -0.02 1.86 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 0.54 6.57 -2.38 -0.02 0.52 16 36 H 0.07 0.56 7.91 -2.39 -0.02 0.54 16 37 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.09 0.49 6.76 -2.39 -0.02 0.47 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.11 0.96 5.41 -2.39 -0.01 0.95 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.46 7.42 -2.38 -0.02 1.45 16 43 H 0.06 1.13 7.80 -2.39 -0.02 1.11 16 44 H 0.34 11.21 8.03 -89.69 -0.72 10.49 16 45 H 0.07 1.88 8.05 -2.39 -0.02 1.86 16 46 H 0.11 3.03 7.41 -2.39 -0.02 3.02 16 47 H 0.40 18.90 7.90 -92.70 -0.73 18.17 16 48 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 49 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 51 H 0.08 1.72 7.00 -2.39 -0.02 1.71 16 52 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -72.83 410.43 1.60 -71.24 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.53 Total: 41.69 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 6.90 Total: 9.71 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -6.71 Total: -116.13 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -0.09 Total: -51.26 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -72.83 1.60 -71.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202093067.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.977 kcal (2) G-P(sol) polarization free energy of solvation -72.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds