Wall clock time and date at job start Tue Mar 31 2020 20:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46860 * 2 1 4 4 C 1.53004 * 109.47436 * 119.99980 * 2 1 3 5 5 C 1.50700 * 109.46738 * 295.00348 * 4 2 1 6 6 O 1.21287 * 120.00399 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99696 * 180.02562 * 5 4 2 8 8 C 1.46925 * 120.63371 * 359.97438 * 7 5 4 9 9 C 1.53190 * 108.77939 * 233.61095 * 8 7 5 10 10 C 1.53044 * 109.31393 * 305.36609 * 9 8 7 11 11 C 1.53044 * 109.53512 * 61.36199 * 10 9 8 12 12 H 1.08995 * 109.49950 * 58.62345 * 11 10 9 13 13 N 1.46901 * 109.49317 * 178.68482 * 11 10 9 14 14 C 1.46905 * 110.99870 * 274.93443 * 13 11 10 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00124 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00196 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00290 * 180.02562 * 17 15 14 19 19 H 1.07990 * 119.99768 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99812 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99864 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99403 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47490 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46718 * 120.00461 * 22 20 18 25 25 H 1.48503 * 109.46960 * 239.99492 * 22 20 18 26 26 C 1.46938 * 120.60412 * 180.02562 * 7 5 4 27 27 C 1.53003 * 109.47044 * 240.00203 * 2 1 3 28 28 C 1.52997 * 117.49813 * 128.74419 * 27 2 1 29 29 C 1.52993 * 117.50064 * 60.08131 * 27 2 1 30 30 H 1.08993 * 109.47160 * 60.00381 * 1 2 3 31 31 H 1.09002 * 109.46860 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47078 * 299.99478 * 1 2 3 33 33 H 1.08992 * 109.47043 * 175.00204 * 4 2 1 34 34 H 1.09001 * 109.46771 * 54.99806 * 4 2 1 35 35 H 1.09004 * 109.58364 * 113.82284 * 8 7 5 36 36 H 1.08996 * 109.58126 * 353.40504 * 8 7 5 37 37 H 1.08999 * 109.49959 * 185.41064 * 9 8 7 38 38 H 1.09003 * 109.51958 * 65.33393 * 9 8 7 39 39 H 1.08996 * 109.45948 * 301.34560 * 10 9 8 40 40 H 1.09001 * 109.44649 * 181.37408 * 10 9 8 41 41 H 1.00901 * 111.00067 * 38.88618 * 13 11 10 42 42 H 1.09001 * 109.46798 * 300.00327 * 14 13 11 43 43 H 1.08998 * 109.46961 * 60.00043 * 14 13 11 44 44 H 0.97009 * 119.99629 * 359.97438 * 17 15 14 45 45 H 0.97004 * 119.99642 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.61515 * 6.62090 * 26 7 5 47 47 H 1.08992 * 109.56460 * 246.18909 * 26 7 5 48 48 H 1.09003 * 115.54285 * 274.41304 * 27 2 1 49 49 H 1.08997 * 117.50280 * 0.02562 * 28 27 2 50 50 H 1.09008 * 117.49628 * 145.01901 * 28 27 2 51 51 H 1.09005 * 117.49946 * 214.97732 * 29 27 2 52 52 H 1.08998 * 117.50174 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0116 1.0874 2.3633 7 7 1.9854 -0.3913 3.7001 8 6 2.7486 -1.6374 3.8535 9 6 1.9977 -2.5599 4.8188 10 6 1.7383 -1.8162 6.1310 11 6 0.8662 -0.5882 5.8595 12 1 -0.0737 -0.9026 5.4058 13 7 0.5917 0.1074 7.1239 14 6 -0.5660 -0.4831 7.8090 15 6 -0.8168 0.2553 9.0986 16 8 -0.1019 1.1824 9.4156 17 7 -1.8356 -0.1146 9.8997 18 6 -2.0641 0.5574 11.0726 19 1 -1.4276 1.3829 11.3548 20 6 -3.1142 0.1756 11.8988 21 7 -3.8884 -0.8292 11.5555 22 14 -3.4250 1.0909 13.4972 23 1 -2.4208 2.1739 13.6510 24 1 -4.7880 1.6800 13.4732 25 1 -3.3141 0.1465 14.6379 26 6 1.6031 0.3566 4.9057 27 6 2.0400 -0.7212 -1.2493 28 6 3.0762 0.0040 -2.1101 29 6 1.6373 -0.1484 -2.6096 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1263 -0.7994 1.2055 34 1 1.6054 -1.7198 1.2951 35 1 3.7365 -1.4136 4.2559 36 1 2.8487 -2.1261 2.8843 37 1 2.5993 -3.4471 5.0163 38 1 1.0475 -2.8562 4.3746 39 1 2.6877 -1.4990 6.5624 40 1 1.2257 -2.4787 6.8284 41 1 1.4048 0.1059 7.7214 42 1 -1.4451 -0.4054 7.1693 43 1 -0.3646 -1.5325 8.0240 44 1 -2.4076 -0.8559 9.6459 45 1 -4.6211 -1.0959 12.1325 46 1 0.9473 1.1828 4.6311 47 1 2.4973 0.7438 5.3939 48 1 2.1253 -1.8046 -1.1646 49 1 3.3950 0.9948 -1.7863 50 1 3.8431 -0.6023 -2.5923 51 1 1.4582 -0.8549 -3.4202 52 1 1.0087 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211277781.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:17 Heat of formation + Delta-G solvation = -59.639206 kcal Electronic energy + Delta-G solvation = -29135.909605 eV Core-core repulsion = 25135.391337 eV Total energy + Delta-G solvation = -4000.518268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.58151 -38.80744 -38.17949 -37.50079 -35.15347 -33.86182 -33.47349 -32.32406 -31.24173 -30.30106 -28.14374 -26.25026 -25.51391 -24.20363 -23.55979 -22.61807 -22.50875 -20.95283 -20.10463 -19.38703 -18.94036 -17.88439 -17.38649 -16.36680 -16.24261 -15.71853 -15.57607 -15.28246 -15.00406 -14.78397 -14.53038 -14.24162 -14.04849 -13.88184 -13.75401 -13.51329 -13.27306 -13.21143 -13.10533 -12.56738 -12.38323 -12.11619 -11.95894 -11.88322 -11.65140 -11.54124 -11.43330 -11.39559 -11.24957 -11.07654 -11.03117 -11.00745 -10.78013 -10.61337 -10.33716 -10.25298 -10.21945 -9.78334 -9.51497 -8.87910 -8.42947 -8.04572 -7.95191 -6.41373 -3.82056 2.48227 2.75279 3.16918 3.27515 3.35038 3.43910 3.91078 4.09101 4.12757 4.29203 4.36761 4.49912 4.56557 4.60793 4.62138 4.67431 4.79481 4.90921 4.95569 5.05647 5.10292 5.16858 5.18829 5.24405 5.27305 5.29286 5.36248 5.38551 5.51795 5.53805 5.55219 5.61785 5.64992 5.69021 5.75719 5.76874 5.83278 5.90559 5.97785 6.05830 6.10188 6.11662 6.20416 6.26888 6.35771 7.17741 7.24948 7.56028 7.64109 8.04883 8.07083 8.61649 9.18497 9.54750 10.06134 10.76453 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024650 B = 0.001784 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.645420 B =15692.581843 C =16106.080964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.045 4.045 3 H 0.078 0.922 4 C -0.132 4.132 5 C 0.514 3.486 6 O -0.534 6.534 7 N -0.613 5.613 8 C 0.106 3.894 9 C -0.131 4.131 10 C -0.154 4.154 11 C 0.077 3.923 12 H 0.079 0.921 13 N -0.661 5.661 14 C 0.053 3.947 15 C 0.441 3.559 16 O -0.582 6.582 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.123 3.877 27 C -0.149 4.149 28 C -0.182 4.182 29 C -0.178 4.178 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.351 0.649 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.100 0.900 47 H 0.068 0.932 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.755 -7.924 -24.997 29.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.064 4.064 3 H 0.097 0.903 4 C -0.172 4.172 5 C 0.302 3.698 6 O -0.410 6.410 7 N -0.347 5.347 8 C -0.017 4.017 9 C -0.170 4.170 10 C -0.193 4.193 11 C -0.035 4.035 12 H 0.098 0.902 13 N -0.292 5.292 14 C -0.080 4.080 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C 0.001 3.999 27 C -0.167 4.167 28 C -0.219 4.219 29 C -0.215 4.215 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.171 0.829 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.087 0.913 48 H 0.121 0.879 49 H 0.112 0.888 50 H 0.110 0.890 51 H 0.111 0.889 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.356 -6.294 -25.015 29.048 hybrid contribution -0.173 -1.204 1.076 1.624 sum 13.183 -7.498 -23.939 28.339 Atomic orbital electron populations 1.21929 0.94257 1.01532 1.03100 1.20473 0.96536 0.98932 0.90410 0.90346 1.21741 1.02746 1.00164 0.92587 1.20681 0.79018 0.85733 0.84324 1.90691 1.39668 1.24624 1.86044 1.48157 1.55464 1.24869 1.06223 1.21777 0.94881 0.84597 1.00485 1.21868 1.01162 0.98106 0.95822 1.22343 1.01036 0.98387 0.97540 1.21884 0.98260 0.91620 0.91718 0.90242 1.59995 1.08614 1.55113 1.05509 1.21685 0.94676 0.96021 0.95575 1.19801 0.84265 0.87336 0.85975 1.90528 1.49549 1.31543 1.75041 1.41869 1.27247 1.31518 1.19431 1.19764 1.13017 1.14011 0.96043 0.87841 1.25266 0.95965 0.96822 0.99931 1.69622 1.18659 1.27259 1.38789 0.85795 0.78332 0.79248 0.80939 1.19205 1.20740 1.20792 1.21513 1.00007 0.94738 0.83683 1.22356 1.03645 0.99034 0.91688 1.23048 0.92490 1.02129 1.04259 1.22934 0.98058 1.03408 0.97081 0.92864 0.93314 0.90500 0.88939 0.88929 0.91165 0.89714 0.90616 0.91356 0.91352 0.91369 0.82894 0.89621 0.93834 0.77483 0.91942 0.88129 0.91334 0.87877 0.88771 0.88993 0.88949 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.78 37.16 0.33 -1.07 16 2 C -0.04 -0.36 2.19 -90.62 -0.20 -0.56 16 3 H 0.08 0.77 7.71 -51.93 -0.40 0.36 16 4 C -0.13 -0.96 3.50 -27.88 -0.10 -1.06 16 5 C 0.51 5.65 7.41 -10.99 -0.08 5.57 16 6 O -0.53 -7.96 13.38 5.55 0.07 -7.88 16 7 N -0.61 -6.12 2.97 -172.79 -0.51 -6.64 16 8 C 0.11 0.71 6.34 -3.71 -0.02 0.68 16 9 C -0.13 -0.93 6.08 -26.61 -0.16 -1.10 16 10 C -0.15 -1.49 5.14 -26.69 -0.14 -1.62 16 11 C 0.08 0.94 2.61 -67.61 -0.18 0.77 16 12 H 0.08 1.04 7.80 -51.93 -0.41 0.63 16 13 N -0.66 -10.57 5.88 -107.89 -0.63 -11.21 16 14 C 0.05 0.94 5.97 -4.97 -0.03 0.91 16 15 C 0.44 10.47 7.82 -10.99 -0.09 10.39 16 16 O -0.58 -15.94 15.78 5.54 0.09 -15.85 16 17 N -0.56 -14.40 5.29 -10.96 -0.06 -14.45 16 18 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 19 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 22 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.12 1.51 6.04 -3.73 -0.02 1.49 16 27 C -0.15 -0.96 5.15 -90.62 -0.47 -1.43 16 28 C -0.18 -1.11 10.18 -26.69 -0.27 -1.38 16 29 C -0.18 -1.12 9.74 -26.70 -0.26 -1.38 16 30 H 0.05 0.46 7.29 -51.93 -0.38 0.08 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.91 5.95 -51.93 -0.31 0.60 16 33 H 0.09 0.52 7.94 -51.93 -0.41 0.11 16 34 H 0.09 0.53 7.69 -51.93 -0.40 0.13 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.38 5.93 -51.93 -0.31 0.08 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.71 7.43 -51.93 -0.39 0.32 16 41 H 0.35 5.71 8.18 -39.29 -0.32 5.38 16 42 H 0.09 1.44 8.06 -51.93 -0.42 1.02 16 43 H 0.04 0.68 7.42 -51.93 -0.39 0.30 16 44 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.10 1.51 7.01 -51.93 -0.36 1.15 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.10 0.57 8.11 -51.93 -0.42 0.15 16 49 H 0.09 0.60 8.05 -51.93 -0.42 0.18 16 50 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 51 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.09 0.63 7.61 -51.93 -0.40 0.24 16 LS Contribution 410.04 15.07 6.18 6.18 Total: -1.00 -32.86 410.04 -10.03 -42.89 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -8.94 Total: 12.59 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.93 Total: 2.14 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.48 Total: -56.23 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: 0.16 Total: -23.73 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.86 -10.03 -42.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211277781.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.752 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds