Wall clock time and date at job start Tue Mar 31 2020 20:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.50696 * 109.47344 * 64.99877 * 4 2 1 6 6 O 1.21278 * 119.99753 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00023 * 179.97438 * 5 4 2 8 8 C 1.46923 * 120.63284 * 0.02562 * 7 5 4 9 9 C 1.53188 * 108.77859 * 126.36420 * 8 7 5 10 10 C 1.53044 * 109.31028 * 54.63665 * 9 8 7 11 11 C 1.53041 * 109.53726 * 298.63633 * 10 9 8 12 12 H 1.09001 * 109.49704 * 301.37624 * 11 10 9 13 13 N 1.46907 * 109.49734 * 181.31781 * 11 10 9 14 14 C 1.46896 * 110.99984 * 84.99760 * 13 11 10 15 15 C 1.50703 * 109.47069 * 180.02562 * 14 13 11 16 16 O 1.21285 * 119.99758 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99967 * 180.02562 * 15 14 13 18 18 C 1.37094 * 119.99643 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00350 * 359.97438 * 18 17 15 20 20 C 1.38959 * 119.99675 * 179.97438 * 18 17 15 21 21 N 1.31404 * 119.99962 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99823 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47180 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47337 * 119.99847 * 22 20 18 25 25 H 1.48502 * 109.46943 * 240.00209 * 22 20 18 26 26 C 1.46930 * 120.63001 * 179.71894 * 7 5 4 27 27 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 28 28 C 1.53007 * 117.49549 * 248.74554 * 27 2 1 29 29 C 1.53001 * 117.49532 * 180.08858 * 27 2 1 30 30 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 31 31 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 32 32 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46873 * 184.99985 * 4 2 1 34 34 H 1.08997 * 109.47047 * 304.99674 * 4 2 1 35 35 H 1.09002 * 109.58786 * 246.15384 * 8 7 5 36 36 H 1.09005 * 109.58646 * 6.43597 * 8 7 5 37 37 H 1.08999 * 109.50327 * 174.58653 * 9 8 7 38 38 H 1.09000 * 109.50453 * 294.65586 * 9 8 7 39 39 H 1.08999 * 109.46030 * 58.65686 * 10 9 8 40 40 H 1.09003 * 109.46028 * 178.61788 * 10 9 8 41 41 H 1.00895 * 111.00143 * 208.95391 * 13 11 10 42 42 H 1.09000 * 109.47521 * 300.00091 * 14 13 11 43 43 H 1.08999 * 109.47346 * 60.00341 * 14 13 11 44 44 H 0.96996 * 119.99871 * 359.97438 * 17 15 14 45 45 H 0.97003 * 119.99879 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.58533 * 353.42627 * 26 7 5 47 47 H 1.09008 * 109.58537 * 113.84623 * 26 7 5 48 48 H 1.08998 * 115.55045 * 34.41728 * 27 2 1 49 49 H 1.08997 * 117.49929 * 359.97438 * 28 27 2 50 50 H 1.08997 * 117.49703 * 145.02482 * 28 27 2 51 51 H 1.09002 * 117.49861 * 214.97615 * 29 27 2 52 52 H 1.09002 * 117.50174 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0116 1.0874 -2.3632 7 7 1.9851 -0.3913 -3.7001 8 6 2.7482 -1.6375 -3.8535 9 6 1.9969 -2.5601 -4.8184 10 6 1.7372 -1.8166 -6.1306 11 6 0.8652 -0.5886 -5.8591 12 1 -0.0745 -0.9028 -5.4050 13 7 0.5902 0.1068 -7.1236 14 6 -0.5667 -0.4846 -7.8088 15 6 -0.8173 0.2528 -9.0990 16 8 -0.1021 1.1794 -9.4166 17 7 -1.8361 -0.1176 -9.8999 18 6 -2.0636 0.5529 -11.0739 19 1 -1.4269 1.3780 -11.3567 20 6 -3.1137 0.1708 -11.8999 21 7 -3.8882 -0.8335 -11.5560 22 14 -3.4242 1.0848 -13.4991 23 1 -2.4189 2.1667 -13.6543 24 1 -3.3133 0.1397 -14.6391 25 1 -4.7870 1.6744 -13.4757 26 6 1.5984 0.3532 -4.9063 27 6 2.0400 -0.7213 1.2492 28 6 2.7393 0.1231 2.3165 29 6 3.5550 -0.8263 1.4352 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1263 -0.7995 -1.2057 34 1 1.6053 -1.7197 -1.2952 35 1 3.7360 -1.4138 -4.2564 36 1 2.8508 -2.1249 -2.8839 37 1 2.5984 -3.4474 -5.0160 38 1 1.0470 -2.8563 -4.3734 39 1 2.6864 -1.4997 -6.5625 40 1 1.2243 -2.4791 -6.8280 41 1 0.4538 1.0948 -6.9707 42 1 -0.3644 -1.5339 -8.0238 43 1 -1.4461 -0.4078 -7.1694 44 1 -2.4078 -0.8589 -9.6461 45 1 -4.6210 -1.1005 -12.1328 46 1 0.9404 1.1776 -4.6315 47 1 2.4904 0.7428 -5.3969 48 1 1.4318 -1.5595 1.5893 49 1 2.8364 1.1923 2.1284 50 1 2.5916 -0.1599 3.3586 51 1 3.9436 -1.7334 1.8981 52 1 4.1884 -0.3819 0.6675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211277821.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:23 Heat of formation + Delta-G solvation = -59.225961 kcal Electronic energy + Delta-G solvation = -29208.522353 eV Core-core repulsion = 25208.022004 eV Total energy + Delta-G solvation = -4000.500348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63612 -38.79985 -38.18057 -37.48603 -35.14409 -33.85796 -33.48147 -32.39674 -31.24669 -30.36351 -28.23297 -26.34084 -25.42674 -24.13060 -23.47251 -22.72990 -22.68354 -20.77852 -20.03999 -19.33109 -18.94148 -17.88146 -17.47055 -16.36654 -16.24014 -15.88047 -15.52064 -15.31542 -15.09598 -14.75610 -14.55429 -14.27819 -14.15472 -13.91348 -13.75293 -13.56088 -13.26923 -13.15692 -13.02247 -12.54978 -12.31398 -12.20605 -11.97135 -11.90061 -11.64319 -11.56316 -11.50931 -11.42730 -11.15149 -11.09782 -11.07609 -10.85298 -10.74310 -10.56090 -10.33591 -10.32790 -10.21812 -9.83686 -9.51377 -8.84594 -8.45612 -8.09734 -7.95468 -6.41155 -3.81840 2.42988 2.69972 3.17079 3.27597 3.35089 3.39287 3.91387 4.07660 4.11350 4.28258 4.37376 4.45094 4.54879 4.63251 4.67407 4.74133 4.79523 4.85701 4.89839 5.05082 5.08817 5.15307 5.21385 5.25536 5.25989 5.28547 5.32642 5.42777 5.47884 5.51110 5.54560 5.67098 5.71791 5.72361 5.74678 5.79798 5.81445 5.89241 5.96492 6.04966 6.05122 6.14633 6.20643 6.28264 6.33059 7.15502 7.22646 7.56176 7.62456 7.98923 8.07210 8.61883 9.18659 9.54962 10.06344 10.76676 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026112 B = 0.001797 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.029410 B =15581.031272 C =15946.403875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.045 4.045 3 H 0.078 0.922 4 C -0.133 4.133 5 C 0.514 3.486 6 O -0.537 6.537 7 N -0.610 5.610 8 C 0.106 3.894 9 C -0.135 4.135 10 C -0.110 4.110 11 C 0.075 3.925 12 H 0.045 0.955 13 N -0.661 5.661 14 C 0.052 3.948 15 C 0.441 3.559 16 O -0.582 6.582 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.110 3.890 27 C -0.149 4.149 28 C -0.179 4.179 29 C -0.183 4.183 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.351 0.649 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.093 0.907 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.142 -6.897 25.711 29.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.063 4.063 3 H 0.096 0.904 4 C -0.173 4.173 5 C 0.302 3.698 6 O -0.414 6.414 7 N -0.344 5.344 8 C -0.017 4.017 9 C -0.174 4.174 10 C -0.148 4.148 11 C -0.036 4.036 12 H 0.063 0.937 13 N -0.294 5.294 14 C -0.080 4.080 15 C 0.227 3.773 16 O -0.466 6.466 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.013 4.013 27 C -0.167 4.167 28 C -0.216 4.216 29 C -0.220 4.220 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.171 0.829 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.110 0.890 47 H 0.096 0.904 48 H 0.122 0.878 49 H 0.113 0.887 50 H 0.111 0.889 51 H 0.112 0.888 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.580 -6.139 25.088 29.181 hybrid contribution -1.310 -0.014 -0.205 1.326 sum 12.270 -6.153 24.884 28.418 Atomic orbital electron populations 1.21919 0.94171 1.01502 1.03188 1.20472 0.96633 0.98816 0.90415 0.90354 1.21760 1.02803 1.00285 0.92421 1.20738 0.78941 0.85707 0.84382 1.90678 1.39916 1.24733 1.86094 1.48101 1.55416 1.25026 1.05859 1.21810 0.94968 0.84383 1.00573 1.21942 1.01011 0.98252 0.96188 1.21552 1.00877 0.96103 0.96285 1.21738 0.97599 0.94833 0.89410 0.93747 1.60096 1.40949 1.07896 1.20473 1.21710 0.91591 0.99607 0.95122 1.19790 0.83820 0.87322 0.86401 1.90524 1.49105 1.31820 1.75186 1.41866 1.27172 1.31597 1.19440 1.19763 1.12931 1.14072 0.96066 0.87840 1.25266 0.95988 0.96821 0.99909 1.69620 1.18654 1.27262 1.38793 0.85795 0.78265 0.79260 0.80997 1.19206 1.20755 1.20777 1.21625 1.00700 0.94639 0.84330 1.22409 0.94644 1.01957 0.97668 1.23018 1.04547 0.97744 0.96241 1.22973 0.93888 1.01827 1.03309 0.92778 0.90503 0.93299 0.88927 0.88823 0.90996 0.89713 0.90325 0.91571 0.90829 0.91337 0.82872 0.89620 0.93850 0.77483 0.91941 0.89031 0.90391 0.87754 0.88743 0.88917 0.88850 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.92 37.16 0.33 -1.02 16 2 C -0.04 -0.35 2.19 -90.62 -0.20 -0.55 16 3 H 0.08 0.75 7.71 -51.93 -0.40 0.35 16 4 C -0.13 -0.96 3.43 -27.88 -0.10 -1.06 16 5 C 0.51 5.55 7.41 -10.99 -0.08 5.47 16 6 O -0.54 -7.79 13.38 5.56 0.07 -7.72 16 7 N -0.61 -6.07 2.98 -173.06 -0.52 -6.58 16 8 C 0.11 0.73 6.34 -3.71 -0.02 0.71 16 9 C -0.14 -1.02 6.08 -26.61 -0.16 -1.18 16 10 C -0.11 -1.17 5.40 -26.69 -0.14 -1.32 16 11 C 0.08 0.94 2.63 -67.83 -0.18 0.77 16 12 H 0.04 0.59 7.80 -51.93 -0.41 0.18 16 13 N -0.66 -10.69 5.93 -108.12 -0.64 -11.33 16 14 C 0.05 0.94 5.97 -4.98 -0.03 0.91 16 15 C 0.44 10.52 7.82 -10.98 -0.09 10.44 16 16 O -0.58 -15.96 15.78 5.55 0.09 -15.87 16 17 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 18 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 19 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 22 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 26 C 0.11 1.31 5.67 -3.95 -0.02 1.28 16 27 C -0.15 -0.94 5.15 -90.62 -0.47 -1.40 16 28 C -0.18 -1.08 10.18 -26.69 -0.27 -1.35 16 29 C -0.18 -1.00 9.68 -26.69 -0.26 -1.26 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.89 5.95 -51.93 -0.31 0.58 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.52 6.93 -51.92 -0.36 0.16 16 34 H 0.09 0.56 7.69 -51.93 -0.40 0.16 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.40 5.93 -51.93 -0.31 0.09 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.79 7.43 -51.93 -0.39 0.40 16 41 H 0.35 5.96 8.06 -39.29 -0.32 5.64 16 42 H 0.09 1.41 7.42 -51.93 -0.39 1.02 16 43 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 44 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.09 1.24 7.01 -51.93 -0.36 0.88 16 47 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 48 H 0.10 0.61 8.11 -51.93 -0.42 0.19 16 49 H 0.09 0.60 8.05 -51.93 -0.42 0.18 16 50 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 52 H 0.09 0.51 7.59 -51.93 -0.39 0.11 16 LS Contribution 409.71 15.07 6.17 6.17 Total: -1.00 -32.77 409.71 -10.03 -42.80 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -8.92 Total: 12.46 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.93 Total: 2.34 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.49 Total: -56.37 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.16 Total: -23.59 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.77 -10.03 -42.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211277821.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.427 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds