Wall clock time and date at job start Tue Mar 31 2020 20:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47229 * 2 1 4 4 C 1.53004 * 109.47188 * 239.99798 * 2 1 3 5 5 C 1.50700 * 109.46738 * 65.00431 * 4 2 1 6 6 O 1.21287 * 120.00399 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99696 * 180.02562 * 5 4 2 8 8 C 1.46925 * 120.63371 * 359.97438 * 7 5 4 9 9 C 1.53190 * 108.77939 * 233.61095 * 8 7 5 10 10 C 1.53044 * 109.31393 * 305.36609 * 9 8 7 11 11 C 1.53044 * 109.53512 * 61.36199 * 10 9 8 12 12 H 1.08995 * 109.49950 * 58.62345 * 11 10 9 13 13 N 1.46901 * 109.49317 * 178.68482 * 11 10 9 14 14 C 1.46905 * 110.99870 * 274.93443 * 13 11 10 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 11 16 16 O 1.21297 * 120.00124 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00196 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00290 * 180.02562 * 17 15 14 19 19 H 1.07990 * 119.99768 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99812 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99864 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99403 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47490 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46718 * 120.00461 * 22 20 18 25 25 H 1.48503 * 109.46960 * 239.99492 * 22 20 18 26 26 C 1.46938 * 120.60412 * 180.02562 * 7 5 4 27 27 C 1.53000 * 109.46818 * 119.99965 * 2 1 3 28 28 C 1.52998 * 117.50043 * 248.61732 * 27 2 1 29 29 C 1.52996 * 60.00345 * 252.51404 * 28 27 2 30 30 H 1.09001 * 109.47271 * 60.00084 * 1 2 3 31 31 H 1.09002 * 109.47273 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47614 * 300.00252 * 1 2 3 33 33 H 1.08992 * 109.47043 * 305.00287 * 4 2 1 34 34 H 1.09001 * 109.46771 * 184.99889 * 4 2 1 35 35 H 1.09004 * 109.58364 * 113.82284 * 8 7 5 36 36 H 1.08996 * 109.58126 * 353.40504 * 8 7 5 37 37 H 1.08999 * 109.49959 * 185.41064 * 9 8 7 38 38 H 1.09003 * 109.51958 * 65.33393 * 9 8 7 39 39 H 1.08996 * 109.45948 * 301.34560 * 10 9 8 40 40 H 1.09001 * 109.44649 * 181.37408 * 10 9 8 41 41 H 1.00901 * 111.00067 * 38.88618 * 13 11 10 42 42 H 1.09001 * 109.46798 * 300.00327 * 14 13 11 43 43 H 1.08998 * 109.46961 * 60.00043 * 14 13 11 44 44 H 0.97009 * 119.99629 * 359.97438 * 17 15 14 45 45 H 0.97004 * 119.99642 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.61515 * 6.62090 * 26 7 5 47 47 H 1.08992 * 109.56460 * 246.18909 * 26 7 5 48 48 H 1.08995 * 115.55404 * 34.33183 * 27 2 1 49 49 H 1.09006 * 117.49534 * 0.02562 * 28 27 2 50 50 H 1.08997 * 117.50191 * 145.01913 * 28 27 2 51 51 H 1.08994 * 117.49567 * 252.50955 * 29 28 27 52 52 H 1.09000 * 117.51355 * 107.48082 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0571 -2.4765 6 8 1.0110 1.0870 -2.3633 7 7 1.9845 -0.3919 -3.7001 8 6 2.7476 -1.6381 -3.8535 9 6 3.9913 -1.3536 -4.7014 10 6 3.5664 -0.7101 -6.0233 11 6 2.8594 0.6178 -5.7421 12 1 3.5307 1.2784 -5.1934 13 7 2.4799 1.2498 -7.0127 14 6 3.5933 2.0337 -7.5640 15 6 3.1673 2.6660 -8.8639 16 8 2.0463 2.4822 -9.2890 17 7 4.0319 3.4358 -9.5540 18 6 3.6442 4.0115 -10.7364 19 1 2.6462 3.8478 -11.1149 20 6 4.5359 4.8047 -11.4481 21 7 5.7505 5.0034 -10.9877 22 14 4.0078 5.5884 -13.0594 23 1 2.6019 5.2129 -13.3551 24 1 4.1124 7.0656 -12.9489 25 1 4.8893 5.1103 -14.1547 26 6 1.6033 0.3567 -4.9057 27 6 2.0399 -0.7213 1.2493 28 6 2.7419 0.1226 2.3151 29 6 3.5550 -0.8281 1.4343 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6054 -1.7198 -1.2951 34 1 3.1264 -0.7995 -1.2055 35 1 2.1297 -2.3860 -4.3505 36 1 3.0499 -2.0044 -2.8725 37 1 4.5154 -2.2878 -4.9034 38 1 4.6523 -0.6750 -4.1622 39 1 2.8863 -1.3790 -6.5507 40 1 4.4477 -0.5291 -6.6386 41 1 2.1584 0.5617 -7.6770 42 1 3.8743 2.8133 -6.8559 43 1 4.4464 1.3786 -7.7405 44 1 4.9284 3.5831 -9.2138 45 1 6.3731 5.5568 -11.4848 46 1 1.1514 1.3063 -4.6191 47 1 0.8917 -0.2280 -5.4885 48 1 1.4310 -1.5585 1.5902 49 1 2.8400 1.1917 2.1265 50 1 2.5947 -0.1593 3.3577 51 1 3.9426 -1.7355 1.8974 52 1 4.1884 -0.3849 0.6659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211277823.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:26 Heat of formation + Delta-G solvation = -59.689144 kcal Electronic energy + Delta-G solvation = -29209.969427 eV Core-core repulsion = 25209.448993 eV Total energy + Delta-G solvation = -4000.520434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.59286 -38.82062 -38.17364 -37.48882 -35.15407 -33.86051 -33.45930 -32.32343 -31.24377 -30.33818 -28.22901 -26.24746 -25.43790 -24.13275 -23.51278 -22.68858 -22.50759 -21.02418 -20.18671 -19.34170 -18.87345 -17.88559 -17.42737 -16.43830 -16.08811 -15.82343 -15.52664 -15.33324 -15.00465 -14.77375 -14.52412 -14.15485 -14.10729 -13.92337 -13.80815 -13.53303 -13.23934 -13.20035 -13.09606 -12.57865 -12.24638 -12.14225 -11.94035 -11.90082 -11.62506 -11.55322 -11.49470 -11.41014 -11.25367 -11.10083 -11.08009 -11.04353 -10.78174 -10.54507 -10.33807 -10.30169 -10.22079 -9.77123 -9.51599 -8.87771 -8.43084 -8.04668 -7.95306 -6.41466 -3.82143 2.48505 2.74913 3.16827 3.27411 3.34935 3.41980 3.90963 4.09360 4.14024 4.29565 4.40564 4.47118 4.56550 4.60623 4.62777 4.67464 4.78655 4.87200 4.95225 5.05984 5.13058 5.15987 5.17814 5.22870 5.27154 5.29115 5.34064 5.38260 5.49777 5.51751 5.54854 5.61498 5.68852 5.74779 5.75353 5.76818 5.82438 5.85154 5.97544 6.05601 6.07701 6.11803 6.19070 6.26245 6.35484 7.17701 7.25072 7.55957 7.64040 8.05090 8.06991 8.61542 9.18395 9.54649 10.06018 10.76378 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021994 B = 0.001816 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.792760 B =15414.943008 C =15546.573344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 H 0.079 0.921 4 C -0.133 4.133 5 C 0.513 3.487 6 O -0.534 6.534 7 N -0.613 5.613 8 C 0.106 3.894 9 C -0.131 4.131 10 C -0.154 4.154 11 C 0.077 3.923 12 H 0.079 0.921 13 N -0.661 5.661 14 C 0.053 3.947 15 C 0.441 3.559 16 O -0.582 6.582 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.123 3.877 27 C -0.149 4.149 28 C -0.178 4.178 29 C -0.183 4.183 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.351 0.649 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.100 0.900 47 H 0.068 0.932 48 H 0.104 0.896 49 H 0.095 0.905 50 H 0.092 0.908 51 H 0.093 0.907 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 -17.241 23.926 29.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.064 4.064 3 H 0.097 0.903 4 C -0.173 4.173 5 C 0.302 3.698 6 O -0.411 6.411 7 N -0.347 5.347 8 C -0.017 4.017 9 C -0.170 4.170 10 C -0.193 4.193 11 C -0.035 4.035 12 H 0.097 0.903 13 N -0.292 5.292 14 C -0.080 4.080 15 C 0.226 3.774 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C 0.001 3.999 27 C -0.167 4.167 28 C -0.215 4.215 29 C -0.220 4.220 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.171 0.829 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.087 0.913 48 H 0.122 0.878 49 H 0.113 0.887 50 H 0.111 0.889 51 H 0.111 0.889 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.398 -16.134 23.892 28.929 hybrid contribution 1.264 -0.328 -0.986 1.636 sum -1.134 -16.462 22.907 28.231 Atomic orbital electron populations 1.21917 0.94200 1.01398 1.03216 1.20474 0.96619 0.98892 0.90402 0.90294 1.21760 1.02753 1.00241 0.92543 1.20711 0.79196 0.85594 0.84311 1.90690 1.39782 1.24548 1.86036 1.48159 1.55605 1.24667 1.06278 1.21778 0.92879 0.86083 1.01010 1.21868 0.97208 1.01479 0.96398 1.22343 1.01377 0.98121 0.97461 1.21884 0.95804 0.93668 0.92129 0.90260 1.59995 1.34950 1.29118 1.05170 1.21686 0.92149 0.97513 0.96615 1.19800 0.86613 0.84424 0.86535 1.90528 1.20680 1.64803 1.70644 1.41870 1.14027 1.43307 1.20871 1.19762 1.00158 1.25684 0.97200 0.87840 1.25270 0.95121 0.97674 0.99952 1.69622 1.05324 1.39520 1.39875 0.85794 0.78892 0.78613 0.81011 1.19202 1.20739 1.20789 1.21513 0.96090 0.98063 0.84284 1.22406 0.94612 1.01952 0.97720 1.23007 1.04518 0.97799 0.96221 1.22961 0.93908 1.01805 1.03335 0.90442 0.93379 0.92800 0.88961 0.88961 0.91167 0.89695 0.90609 0.91377 0.91346 0.91371 0.82892 0.89624 0.93832 0.77481 0.91938 0.88132 0.91327 0.87803 0.88701 0.88941 0.88879 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.92 37.16 0.33 -1.00 16 2 C -0.05 -0.37 2.19 -90.62 -0.20 -0.56 16 3 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 4 C -0.13 -0.98 3.43 -27.88 -0.10 -1.08 16 5 C 0.51 5.66 7.42 -10.99 -0.08 5.58 16 6 O -0.53 -7.97 13.38 5.55 0.07 -7.90 16 7 N -0.61 -6.14 2.97 -172.79 -0.51 -6.66 16 8 C 0.11 0.71 6.34 -3.71 -0.02 0.69 16 9 C -0.13 -0.94 6.08 -26.61 -0.16 -1.10 16 10 C -0.15 -1.49 5.14 -26.69 -0.14 -1.63 16 11 C 0.08 0.95 2.61 -67.61 -0.18 0.77 16 12 H 0.08 1.04 7.80 -51.93 -0.41 0.63 16 13 N -0.66 -10.60 5.88 -107.89 -0.63 -11.23 16 14 C 0.05 0.94 5.97 -4.97 -0.03 0.91 16 15 C 0.44 10.48 7.82 -10.99 -0.09 10.40 16 16 O -0.58 -15.94 15.78 5.54 0.09 -15.85 16 17 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 18 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 19 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.69 13.05 55.50 0.72 -23.96 16 22 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.12 1.51 6.04 -3.73 -0.02 1.49 16 27 C -0.15 -0.96 5.15 -90.62 -0.47 -1.43 16 28 C -0.18 -1.13 10.18 -26.73 -0.27 -1.40 16 29 C -0.18 -1.06 9.67 -26.73 -0.26 -1.32 16 30 H 0.08 0.88 5.95 -51.93 -0.31 0.58 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.53 7.94 -51.93 -0.41 0.12 16 34 H 0.09 0.55 6.67 -51.93 -0.35 0.21 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.39 5.93 -51.93 -0.31 0.09 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.71 7.43 -51.93 -0.39 0.32 16 41 H 0.35 5.71 8.18 -39.29 -0.32 5.39 16 42 H 0.09 1.44 8.06 -51.93 -0.42 1.02 16 43 H 0.04 0.68 7.42 -51.93 -0.39 0.30 16 44 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.10 1.52 7.01 -51.93 -0.36 1.15 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.10 0.61 8.11 -51.93 -0.42 0.19 16 49 H 0.09 0.64 8.05 -51.93 -0.42 0.22 16 50 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 51 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.09 0.55 7.58 -51.93 -0.39 0.16 16 LS Contribution 409.84 15.07 6.18 6.18 Total: -1.00 -32.84 409.84 -10.01 -42.85 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -8.93 Total: 12.61 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -1.92 Total: 2.25 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.48 Total: -56.32 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.16 Total: -23.75 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.84 -10.01 -42.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211277823.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.835 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds