Wall clock time and date at job start Tue Mar 31 2020 19:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46925 * 2 1 4 4 C 1.53002 * 109.47033 * 240.00611 * 2 1 3 5 5 H 1.09002 * 109.47364 * 59.99790 * 4 2 1 6 6 C 1.52997 * 109.47205 * 179.97438 * 4 2 1 7 7 C 1.50706 * 109.47005 * 299.99621 * 4 2 1 8 8 O 1.21279 * 119.99532 * 323.08368 * 7 4 2 9 9 N 1.34775 * 119.99840 * 143.08816 * 7 4 2 10 10 C 1.47210 * 136.38371 * 4.85477 * 9 7 4 11 11 C 1.53903 * 87.74255 * 152.02035 * 10 9 7 12 12 H 1.08995 * 115.08246 * 141.25282 * 11 10 9 13 13 C 1.53163 * 111.74553 * 273.17730 * 11 10 9 14 14 C 1.53147 * 108.60986 * 138.53197 * 13 11 10 15 15 N 1.46397 * 109.55302 * 298.58465 * 14 13 11 16 16 C 1.46907 * 110.99813 * 190.16536 * 15 14 13 17 17 C 1.50695 * 109.47008 * 63.26604 * 16 15 14 18 18 O 1.21290 * 120.00375 * 359.97438 * 17 16 15 19 19 N 1.34781 * 119.99968 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99834 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00251 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99841 * 179.97438 * 20 19 17 23 23 N 1.31417 * 119.99728 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00327 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46841 * 59.99955 * 24 22 20 26 26 H 1.48497 * 109.47387 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46854 * 300.00395 * 24 22 20 28 28 C 1.45493 * 113.13582 * 64.61554 * 15 14 13 29 29 C 1.46626 * 136.37700 * 184.48475 * 9 7 4 30 30 H 1.09001 * 111.73214 * 95.34772 * 29 9 7 31 31 H 1.08998 * 109.46679 * 299.99525 * 1 2 3 32 32 H 1.08996 * 109.47239 * 60.00097 * 1 2 3 33 33 H 1.09000 * 109.46334 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47713 * 120.00082 * 2 1 3 35 35 H 1.09004 * 109.47003 * 59.99806 * 3 2 1 36 36 H 1.09001 * 109.47426 * 180.02562 * 3 2 1 37 37 H 1.08999 * 109.47336 * 300.00708 * 3 2 1 38 38 H 1.09000 * 109.47120 * 173.48395 * 6 4 2 39 39 H 1.09003 * 109.47357 * 293.48547 * 6 4 2 40 40 H 1.09003 * 109.47203 * 53.48014 * 6 4 2 41 41 H 1.08996 * 113.50628 * 266.74009 * 10 9 7 42 42 H 1.09005 * 113.50484 * 37.23364 * 10 9 7 43 43 H 1.09005 * 109.58352 * 258.80738 * 13 11 10 44 44 H 1.09003 * 109.58617 * 19.22223 * 13 11 10 45 45 H 1.08998 * 109.53307 * 178.40035 * 14 13 11 46 46 H 1.08997 * 109.09542 * 58.49868 * 14 13 11 47 47 H 1.09000 * 109.46994 * 183.26135 * 16 15 14 48 48 H 1.08996 * 109.47039 * 303.25929 * 16 15 14 49 49 H 0.96997 * 120.00113 * 359.97438 * 19 17 16 50 50 H 0.97006 * 119.99805 * 179.97438 * 23 22 20 51 51 H 1.09005 * 108.57683 * 189.34705 * 28 15 14 52 52 H 1.08993 * 108.57987 * 71.67956 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 1 1.6767 -0.2072 -2.1393 6 6 3.5700 -0.7206 -1.2497 7 6 1.5377 -2.1420 -1.2494 8 8 1.4550 -2.7559 -0.2067 9 7 1.1807 -2.7304 -2.4082 10 6 1.2134 -2.3777 -3.8370 11 6 1.3174 -3.8822 -4.1436 12 1 0.7516 -4.2168 -5.0130 13 6 2.7706 -4.3658 -4.1256 14 6 2.8249 -5.7243 -3.4205 15 7 2.3617 -5.5784 -2.0394 16 6 2.6244 -6.7984 -1.2644 17 6 4.1110 -7.0315 -1.1830 18 8 4.8764 -6.2578 -1.7183 19 7 4.5900 -8.0998 -0.5153 20 6 5.9425 -8.3121 -0.4417 21 1 6.6240 -7.6231 -0.9184 22 6 6.4364 -9.4132 0.2470 23 7 5.6071 -10.2513 0.8274 24 14 8.2791 -9.7022 0.3480 25 1 8.9261 -8.5430 1.0134 26 1 8.5446 -10.9351 1.1319 27 1 8.8314 -9.8584 -1.0216 28 6 0.9626 -5.1909 -1.9436 29 6 0.5915 -4.0114 -2.8107 30 1 -0.4895 -3.9387 -2.9300 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 -1.0277 -0.0005 34 1 1.8935 -0.5138 0.8899 35 1 1.6766 1.9564 0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6766 1.9564 -0.8899 38 1 3.9334 -1.3320 -2.0757 39 1 3.9330 0.3006 -1.3664 40 1 3.9337 -1.1299 -0.3072 41 1 0.2888 -1.9241 -4.1941 42 1 2.0995 -1.8118 -4.1249 43 1 3.1371 -4.4600 -5.1478 44 1 3.3866 -3.6518 -3.5788 45 1 3.8494 -6.0962 -3.4243 46 1 2.1801 -6.4264 -3.9491 47 1 2.2189 -6.6846 -0.2591 48 1 2.1494 -7.6488 -1.7536 49 1 3.9780 -8.7185 -0.0869 50 1 5.9519 -11.0202 1.3080 51 1 0.7415 -4.9422 -0.9056 52 1 0.3460 -6.0420 -2.2323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221844320.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:41 Heat of formation + Delta-G solvation = -35.600788 kcal Electronic energy + Delta-G solvation = -31075.282290 eV Core-core repulsion = 27075.806406 eV Total energy + Delta-G solvation = -3999.475884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.24077 -39.04200 -38.21674 -36.05910 -35.86441 -33.77756 -32.00761 -31.17734 -31.09622 -29.51315 -28.42080 -27.35939 -25.81926 -24.52570 -23.97125 -23.45527 -21.72225 -21.01251 -19.42994 -19.13818 -17.98235 -17.81257 -17.15482 -16.34005 -15.96447 -15.67194 -15.00645 -14.91863 -14.69320 -14.52126 -14.11846 -14.06181 -13.91062 -13.77607 -13.55387 -13.27846 -12.95232 -12.75334 -12.49437 -12.36805 -12.30721 -12.28091 -12.14092 -11.87067 -11.61228 -11.50706 -11.44368 -11.26701 -11.12719 -10.99222 -10.92704 -10.82174 -10.67257 -10.46676 -10.37844 -10.17291 -10.12015 -9.39033 -9.33772 -8.61163 -8.27205 -7.89941 -7.61931 -6.35799 -3.76310 2.82181 2.85189 3.23762 3.28893 3.33377 3.96372 3.99266 4.19661 4.32864 4.34025 4.52171 4.68283 4.77139 4.91822 4.98842 5.05646 5.18713 5.20219 5.23127 5.30016 5.31281 5.32150 5.33933 5.42172 5.45594 5.51078 5.60809 5.64737 5.66412 5.69522 5.73932 5.79184 5.87172 5.89248 5.94072 5.98060 6.07537 6.09913 6.11956 6.17472 6.22614 6.27933 6.36889 6.52044 6.58719 7.46120 7.60205 7.68639 7.87711 8.12855 8.37966 8.68762 9.24100 9.61473 10.13693 10.82093 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.002930 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.525334 B = 9552.806677 C =10486.359798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.147 4.147 4 C -0.096 4.096 5 H 0.081 0.919 6 C -0.140 4.140 7 C 0.555 3.445 8 O -0.526 6.526 9 N -0.634 5.634 10 C 0.099 3.901 11 C -0.122 4.122 12 H 0.097 0.903 13 C -0.090 4.090 14 C 0.055 3.945 15 N -0.514 5.514 16 C 0.054 3.946 17 C 0.447 3.553 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.059 3.941 29 C 0.143 3.857 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.108 0.892 46 H 0.017 0.983 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.088 0.912 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.349 18.209 -9.380 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 C -0.204 4.204 4 C -0.118 4.118 5 H 0.099 0.901 6 C -0.198 4.198 7 C 0.345 3.655 8 O -0.401 6.401 9 N -0.371 5.371 10 C -0.025 4.025 11 C -0.141 4.141 12 H 0.115 0.885 13 C -0.128 4.128 14 C -0.072 4.072 15 N -0.239 5.239 16 C -0.077 4.077 17 C 0.233 3.767 18 O -0.461 6.461 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 C -0.070 4.070 29 C 0.039 3.961 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.126 0.874 46 H 0.035 0.965 47 H 0.105 0.895 48 H 0.062 0.938 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.106 0.894 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -12.516 18.705 -8.617 24.099 hybrid contribution -0.158 -1.233 -0.003 1.243 sum -12.674 17.472 -8.620 23.242 Atomic orbital electron populations 1.21861 0.95235 1.02081 1.01359 1.21014 0.95775 0.95762 0.97544 1.21880 1.01423 0.95433 1.01644 1.21293 0.97918 0.92537 1.00006 0.90094 1.21739 0.92401 1.02167 1.03495 1.20019 0.76579 0.87643 0.81290 1.90700 1.53712 1.65123 1.30530 1.49476 1.63202 1.18704 1.05672 1.23200 1.01805 0.97132 0.80318 1.22913 0.98702 0.95447 0.97012 0.88515 1.21384 0.93080 0.98291 1.00067 1.22112 1.02930 0.95346 0.86794 1.59953 1.17267 1.34014 1.12672 1.21743 0.96509 0.90527 0.98909 1.19730 0.89074 0.83600 0.84340 1.90455 1.58688 1.46943 1.49992 1.41860 1.08084 1.22892 1.47352 1.19637 0.82479 1.08908 1.31662 0.88023 1.25250 1.00221 0.95850 0.96666 1.69613 1.35098 1.14519 1.35230 0.85929 0.82358 0.77609 0.78379 1.19913 1.21022 1.19973 1.21376 0.88977 0.95207 1.01440 1.21909 0.97155 0.84741 0.92264 0.89608 0.92527 0.93136 0.92412 0.89795 0.92509 0.92143 0.92846 0.92086 0.91588 0.91493 0.90171 0.90317 0.91204 0.90678 0.87361 0.96464 0.89489 0.93754 0.77517 0.91891 0.89395 0.95248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.94 37.16 0.33 -1.14 16 2 C -0.08 -0.87 2.20 -90.62 -0.20 -1.07 16 3 C -0.15 -1.19 8.84 37.16 0.33 -0.86 16 4 C -0.10 -1.07 2.23 -91.77 -0.20 -1.28 16 5 H 0.08 0.74 7.83 -51.93 -0.41 0.34 16 6 C -0.14 -1.60 8.63 37.16 0.32 -1.28 16 7 C 0.55 8.07 5.92 -10.98 -0.06 8.01 16 8 O -0.53 -9.86 15.19 5.56 0.08 -9.78 16 9 N -0.63 -7.90 3.41 -184.92 -0.63 -8.53 16 10 C 0.10 0.85 7.54 -10.52 -0.08 0.77 16 11 C -0.12 -1.20 4.56 -90.41 -0.41 -1.61 16 12 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 13 C -0.09 -1.17 5.81 -26.57 -0.15 -1.33 16 14 C 0.06 0.92 5.06 -4.02 -0.02 0.90 16 15 N -0.51 -9.27 4.36 -238.84 -1.04 -10.31 16 16 C 0.05 1.06 5.43 -4.97 -0.03 1.03 16 17 C 0.45 10.98 7.41 -10.99 -0.08 10.90 16 18 O -0.58 -15.81 13.73 5.55 0.08 -15.73 16 19 N -0.57 -14.83 5.29 -10.96 -0.06 -14.89 16 20 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 23 N -0.90 -25.19 13.05 55.50 0.72 -24.47 16 24 Si 0.93 21.52 29.55 -169.99 -5.02 16.49 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 28 C 0.06 0.88 4.96 -5.58 -0.03 0.85 16 29 C 0.14 1.69 4.11 -76.53 -0.31 1.38 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.70 6.89 -51.93 -0.36 0.34 16 34 H 0.08 1.07 7.86 -51.93 -0.41 0.66 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.48 6.58 -51.93 -0.34 0.14 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.59 6.79 -51.93 -0.35 0.23 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.63 8.01 -51.93 -0.42 0.21 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.15 7.71 -51.93 -0.40 0.75 16 45 H 0.11 2.21 5.51 -51.93 -0.29 1.92 16 46 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 48 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.39 9.91 7.90 -40.82 -0.32 9.58 16 50 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 51 H 0.09 1.50 6.99 -51.93 -0.36 1.14 16 52 H 0.03 0.39 8.09 -51.93 -0.42 -0.03 16 LS Contribution 404.11 15.07 6.09 6.09 Total: -1.00 -33.92 404.11 -9.70 -43.62 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -9.08 Total: 10.36 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -0.85 Total: 7.14 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -1.00 Total: -58.20 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: 0.16 Total: -25.51 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.92 -9.70 -43.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221844320.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.024 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds