Wall clock time and date at job start Tue Mar 31 2020 19:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46925 * 2 1 4 4 C 1.53002 * 109.47033 * 240.00611 * 2 1 3 5 5 H 1.09002 * 109.47364 * 59.99790 * 4 2 1 6 6 C 1.52997 * 109.47205 * 179.97438 * 4 2 1 7 7 C 1.50706 * 109.47005 * 299.99621 * 4 2 1 8 8 O 1.21279 * 119.99532 * 323.08368 * 7 4 2 9 9 N 1.34775 * 119.99840 * 143.08816 * 7 4 2 10 10 C 1.47210 * 136.38371 * 4.85477 * 9 7 4 11 11 C 1.53903 * 87.74255 * 152.02035 * 10 9 7 12 12 H 1.08995 * 115.08246 * 141.25282 * 11 10 9 13 13 C 1.53163 * 111.74553 * 273.17730 * 11 10 9 14 14 C 1.53147 * 108.60986 * 138.53197 * 13 11 10 15 15 N 1.46397 * 109.55302 * 298.58465 * 14 13 11 16 16 C 1.46907 * 110.99813 * 190.16536 * 15 14 13 17 17 C 1.50695 * 109.47008 * 63.26604 * 16 15 14 18 18 O 1.21290 * 120.00375 * 359.97438 * 17 16 15 19 19 N 1.34781 * 119.99968 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99834 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00251 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99841 * 179.97438 * 20 19 17 23 23 N 1.31417 * 119.99728 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00327 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46841 * 59.99955 * 24 22 20 26 26 H 1.48497 * 109.47387 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46854 * 300.00395 * 24 22 20 28 28 C 1.45493 * 113.13582 * 64.61554 * 15 14 13 29 29 C 1.46626 * 136.37700 * 184.48475 * 9 7 4 30 30 H 1.09001 * 111.73214 * 95.34772 * 29 9 7 31 31 H 1.08998 * 109.46679 * 299.99525 * 1 2 3 32 32 H 1.08996 * 109.47239 * 60.00097 * 1 2 3 33 33 H 1.09000 * 109.46334 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47713 * 120.00082 * 2 1 3 35 35 H 1.09004 * 109.47003 * 59.99806 * 3 2 1 36 36 H 1.09001 * 109.47426 * 180.02562 * 3 2 1 37 37 H 1.08999 * 109.47336 * 300.00708 * 3 2 1 38 38 H 1.09000 * 109.47120 * 173.48395 * 6 4 2 39 39 H 1.09003 * 109.47357 * 293.48547 * 6 4 2 40 40 H 1.09003 * 109.47203 * 53.48014 * 6 4 2 41 41 H 1.08996 * 113.50628 * 266.74009 * 10 9 7 42 42 H 1.09005 * 113.50484 * 37.23364 * 10 9 7 43 43 H 1.09005 * 109.58352 * 258.80738 * 13 11 10 44 44 H 1.09003 * 109.58617 * 19.22223 * 13 11 10 45 45 H 1.08998 * 109.53307 * 178.40035 * 14 13 11 46 46 H 1.08997 * 109.09542 * 58.49868 * 14 13 11 47 47 H 1.09000 * 109.46994 * 183.26135 * 16 15 14 48 48 H 1.08996 * 109.47039 * 303.25929 * 16 15 14 49 49 H 0.96997 * 120.00113 * 359.97438 * 19 17 16 50 50 H 0.97006 * 119.99805 * 179.97438 * 23 22 20 51 51 H 1.09005 * 108.57683 * 189.34705 * 28 15 14 52 52 H 1.08993 * 108.57987 * 71.67956 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 1 1.6767 -0.2072 -2.1393 6 6 3.5700 -0.7206 -1.2497 7 6 1.5377 -2.1420 -1.2494 8 8 1.4550 -2.7559 -0.2067 9 7 1.1807 -2.7304 -2.4082 10 6 1.2134 -2.3777 -3.8370 11 6 1.3174 -3.8822 -4.1436 12 1 0.7516 -4.2168 -5.0130 13 6 2.7706 -4.3658 -4.1256 14 6 2.8249 -5.7243 -3.4205 15 7 2.3617 -5.5784 -2.0394 16 6 2.6244 -6.7984 -1.2644 17 6 4.1110 -7.0315 -1.1830 18 8 4.8764 -6.2578 -1.7183 19 7 4.5900 -8.0998 -0.5153 20 6 5.9425 -8.3121 -0.4417 21 1 6.6240 -7.6231 -0.9184 22 6 6.4364 -9.4132 0.2470 23 7 5.6071 -10.2513 0.8274 24 14 8.2791 -9.7022 0.3480 25 1 8.9261 -8.5430 1.0134 26 1 8.5446 -10.9351 1.1319 27 1 8.8314 -9.8584 -1.0216 28 6 0.9626 -5.1909 -1.9436 29 6 0.5915 -4.0114 -2.8107 30 1 -0.4895 -3.9387 -2.9300 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3632 -1.0277 -0.0005 34 1 1.8935 -0.5138 0.8899 35 1 1.6766 1.9564 0.8900 36 1 3.1300 1.4426 -0.0005 37 1 1.6766 1.9564 -0.8899 38 1 3.9334 -1.3320 -2.0757 39 1 3.9330 0.3006 -1.3664 40 1 3.9337 -1.1299 -0.3072 41 1 0.2888 -1.9241 -4.1941 42 1 2.0995 -1.8118 -4.1249 43 1 3.1371 -4.4600 -5.1478 44 1 3.3866 -3.6518 -3.5788 45 1 3.8494 -6.0962 -3.4243 46 1 2.1801 -6.4264 -3.9491 47 1 2.2189 -6.6846 -0.2591 48 1 2.1494 -7.6488 -1.7536 49 1 3.9780 -8.7185 -0.0869 50 1 5.9519 -11.0202 1.3080 51 1 0.7415 -4.9422 -0.9056 52 1 0.3460 -6.0420 -2.2323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221844320.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:40 Heat of formation + Delta-G solvation = -59.893787 kcal Electronic energy + Delta-G solvation = -31076.335714 eV Core-core repulsion = 27075.806406 eV Total energy + Delta-G solvation = -4000.529308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.21055 -40.42517 -39.75042 -37.38979 -36.93759 -35.86456 -33.40593 -32.97638 -32.06030 -30.67144 -29.64711 -28.08460 -27.41949 -25.69578 -25.47784 -24.47988 -22.78003 -21.96579 -21.08793 -20.33115 -19.91033 -19.00902 -18.20324 -17.72011 -17.19224 -16.95897 -16.50378 -16.41119 -16.16452 -15.73817 -15.50575 -15.35627 -15.23566 -14.88845 -14.72394 -14.57250 -14.24387 -13.82881 -13.65457 -13.54507 -13.41663 -13.18229 -13.15974 -13.06205 -12.99236 -12.93976 -12.76319 -12.47503 -12.46015 -12.39069 -12.14365 -12.01396 -11.95132 -11.74923 -11.62433 -11.50236 -11.39601 -11.14156 -10.40873 -10.26202 -10.02031 -9.52159 -9.03310 -8.48293 -5.97551 1.37475 1.38680 1.50391 1.80372 1.94382 2.01758 2.26172 2.70917 3.17741 3.29823 3.37077 3.50658 3.67889 3.80623 3.95821 4.01972 4.10528 4.17946 4.23208 4.29173 4.37253 4.39509 4.45559 4.49217 4.50288 4.54239 4.56026 4.59719 4.64133 4.76339 4.76891 4.80373 4.84766 4.87246 4.98056 4.99363 4.99893 5.08800 5.12916 5.17408 5.26706 5.29307 5.37859 5.41601 5.45574 5.48749 5.89713 6.12846 6.41581 6.58124 6.93504 7.10012 7.34777 7.52830 8.08681 8.69239 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.002930 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.525334 B = 9552.806677 C =10486.359798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.141 4.141 4 C -0.090 4.090 5 H 0.113 0.887 6 C -0.136 4.136 7 C 0.543 3.457 8 O -0.585 6.585 9 N -0.643 5.643 10 C 0.106 3.894 11 C -0.109 4.109 12 H 0.139 0.861 13 C -0.086 4.086 14 C 0.056 3.944 15 N -0.537 5.537 16 C 0.066 3.934 17 C 0.444 3.556 18 O -0.609 6.609 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.015 4.015 23 N -0.923 5.923 24 Si 0.995 3.005 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.268 1.268 28 C 0.060 3.940 29 C 0.131 3.869 30 H 0.121 0.879 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.033 0.967 41 H 0.122 0.878 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.044 0.956 45 H 0.061 0.939 46 H 0.037 0.963 47 H 0.088 0.912 48 H 0.068 0.932 49 H 0.394 0.606 50 H 0.278 0.722 51 H 0.057 0.943 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.888 19.879 -11.931 27.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 C -0.198 4.198 4 C -0.111 4.111 5 H 0.131 0.869 6 C -0.193 4.193 7 C 0.334 3.666 8 O -0.465 6.465 9 N -0.378 5.378 10 C -0.015 4.015 11 C -0.128 4.128 12 H 0.157 0.843 13 C -0.123 4.123 14 C -0.071 4.071 15 N -0.262 5.262 16 C -0.065 4.065 17 C 0.231 3.769 18 O -0.495 6.495 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.564 5.564 24 Si 0.818 3.182 25 H -0.199 1.199 26 H -0.193 1.193 27 H -0.194 1.194 28 C -0.068 4.068 29 C 0.028 3.972 30 H 0.138 0.862 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.053 0.947 41 H 0.140 0.860 42 H 0.105 0.895 43 H 0.112 0.888 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.055 0.945 47 H 0.106 0.894 48 H 0.085 0.915 49 H 0.228 0.772 50 H 0.087 0.913 51 H 0.076 0.924 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.086 20.379 -11.217 27.195 hybrid contribution 0.304 -1.787 0.779 1.974 sum -13.782 18.592 -10.438 25.388 Atomic orbital electron populations 1.21801 0.94584 1.00687 1.02817 1.20988 0.96332 0.96982 0.95834 1.21840 1.01419 0.93541 1.02966 1.21330 0.97273 0.90916 1.01563 0.86881 1.21707 0.92962 1.03484 1.01178 1.20655 0.76078 0.88724 0.81150 1.90667 1.56295 1.66677 1.32839 1.49690 1.62124 1.19179 1.06843 1.23465 1.04285 0.96464 0.77287 1.22860 0.96240 0.96481 0.97185 0.84318 1.21334 0.95473 0.95278 1.00248 1.22015 1.00433 0.98035 0.86623 1.59886 1.19775 1.33128 1.13460 1.21573 0.92538 0.92559 0.99876 1.20633 0.91214 0.82352 0.82679 1.90432 1.60352 1.47806 1.50937 1.41934 1.07590 1.23651 1.48033 1.19631 0.83415 1.09753 1.33449 0.90281 1.26089 1.04826 0.94943 0.95544 1.69685 1.36914 1.14699 1.35060 0.84963 0.76666 0.77858 0.78686 1.19874 1.19338 1.19351 1.21381 0.87148 0.97471 1.00777 1.22260 0.99277 0.83142 0.92555 0.86169 0.91856 0.90822 0.95147 0.93429 0.91936 0.92133 0.90755 0.93273 0.88526 0.94738 0.86019 0.89478 0.88809 0.93761 0.92048 0.94541 0.89392 0.91456 0.77226 0.91274 0.92445 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.94 71.98 0.64 -2.05 16 2 C -0.08 -1.72 2.20 -10.79 -0.02 -1.74 16 3 C -0.14 -2.01 8.84 71.98 0.64 -1.37 16 4 C -0.09 -1.94 2.23 -11.54 -0.03 -1.96 16 5 H 0.11 1.69 7.83 -2.39 -0.02 1.67 16 6 C -0.14 -3.13 8.63 71.98 0.62 -2.51 16 7 C 0.54 16.00 5.92 87.66 0.52 16.52 16 8 O -0.58 -23.50 15.19 -3.03 -0.05 -23.54 16 9 N -0.64 -14.96 3.41 -857.37 -2.92 -17.88 16 10 C 0.11 1.37 7.54 81.80 0.62 1.99 16 11 C -0.11 -1.72 4.56 -10.66 -0.05 -1.77 16 12 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 13 C -0.09 -2.09 5.81 30.70 0.18 -1.92 16 14 C 0.06 1.87 5.06 86.45 0.44 2.30 16 15 N -0.54 -19.82 4.36 -909.57 -3.96 -23.78 16 16 C 0.07 2.66 5.43 85.55 0.46 3.12 16 17 C 0.44 23.01 7.41 87.65 0.65 23.66 16 18 O -0.61 -35.53 13.73 -3.06 -0.04 -35.58 16 19 N -0.57 -31.64 5.29 -306.99 -1.62 -33.26 16 20 C -0.33 -19.82 9.68 84.04 0.81 -19.00 16 21 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 22 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 23 N -0.92 -51.98 13.05 21.66 0.28 -51.69 16 24 Si 1.00 44.52 29.55 68.60 2.03 46.54 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 C 0.06 1.77 4.96 85.93 0.43 2.20 16 29 C 0.13 2.77 4.11 39.35 0.16 2.93 16 30 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.03 0.74 6.89 -2.39 -0.02 0.72 16 34 H 0.05 1.32 7.86 -2.39 -0.02 1.30 16 35 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.06 0.86 6.58 -2.39 -0.02 0.84 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.10 1.58 6.79 -2.39 -0.02 1.57 16 40 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.09 1.04 8.01 -2.38 -0.02 1.02 16 43 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.04 1.35 7.71 -2.39 -0.02 1.33 16 45 H 0.06 2.63 5.51 -2.39 -0.01 2.62 16 46 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.09 3.51 8.07 -2.39 -0.02 3.49 16 48 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 49 H 0.39 20.82 7.90 -92.71 -0.73 20.08 16 50 H 0.28 14.63 8.31 -92.70 -0.77 13.86 16 51 H 0.06 2.05 6.99 -2.38 -0.02 2.03 16 52 H 0.05 1.23 8.09 -2.39 -0.02 1.21 16 Total: -1.00 -81.21 404.11 0.42 -80.79 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: 0.17 Total: 38.35 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 6.54 Total: 20.06 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -8.23 Total: -126.62 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -0.09 Total: -59.12 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -81.21 0.42 -80.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221844320.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.896 kcal (2) G-P(sol) polarization free energy of solvation -81.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds