Wall clock time and date at job start Tue Mar 31 2020 20:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47058 * 2 1 4 4 C 1.52999 * 109.47287 * 239.99751 * 2 1 3 5 5 C 1.50706 * 109.47019 * 174.99429 * 4 2 1 6 6 O 1.21275 * 119.99930 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99617 * 180.02562 * 5 4 2 8 8 C 1.46506 * 119.99877 * 180.02562 * 7 5 4 9 9 C 1.52992 * 109.47019 * 179.97438 * 8 7 5 10 10 C 1.53349 * 109.41253 * 295.11868 * 9 8 7 11 11 C 1.53189 * 109.15350 * 178.68002 * 10 9 8 12 12 N 1.46931 * 108.89061 * 54.57922 * 11 10 9 13 13 C 1.36938 * 120.62972 * 126.29441 * 12 11 10 14 14 H 1.08005 * 120.00173 * 331.83979 * 13 12 11 15 15 C 1.38813 * 119.99936 * 151.83343 * 13 12 11 16 16 N 1.31618 * 120.00004 * 343.08512 * 15 13 12 17 17 Si 1.86806 * 119.99953 * 163.08402 * 15 13 12 18 18 H 1.48500 * 109.46925 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46793 * 120.00276 * 17 15 13 20 20 H 1.48498 * 109.46814 * 240.00176 * 17 15 13 21 21 C 1.46927 * 118.74004 * 306.32424 * 12 11 10 22 22 C 1.53047 * 109.45971 * 175.00016 * 9 8 7 23 23 N 1.46503 * 109.47354 * 119.99651 * 2 1 3 24 24 C 1.46765 * 124.35018 * 239.72628 * 23 2 1 25 25 C 1.54662 * 105.38205 * 162.85300 * 24 23 2 26 26 C 1.54625 * 101.68271 * 25.76943 * 25 24 23 27 27 C 1.34414 * 124.34768 * 60.02828 * 23 2 1 28 28 O 1.21281 * 124.94264 * 0.38657 * 27 23 2 29 29 H 1.09003 * 109.46828 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46969 * 299.99734 * 1 2 3 31 31 H 1.08996 * 109.47422 * 60.00615 * 1 2 3 32 32 H 1.09003 * 109.46767 * 54.99940 * 4 2 1 33 33 H 1.08998 * 109.47534 * 294.99753 * 4 2 1 34 34 H 0.96998 * 120.00292 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.46574 * 60.00005 * 8 7 5 36 36 H 1.08998 * 109.46839 * 300.00252 * 8 7 5 37 37 H 1.09005 * 109.46227 * 55.02916 * 9 8 7 38 38 H 1.09001 * 109.68292 * 58.71645 * 10 9 8 39 39 H 1.08994 * 109.47524 * 298.52469 * 10 9 8 40 40 H 1.09000 * 109.58714 * 294.72587 * 11 10 9 41 41 H 1.09003 * 109.58688 * 174.43867 * 11 10 9 42 42 H 0.96996 * 119.99787 * 179.97438 * 16 15 13 43 43 H 1.09002 * 109.58255 * 173.39566 * 21 12 11 44 44 H 1.09000 * 109.58150 * 293.67300 * 21 12 11 45 45 H 1.09000 * 109.49464 * 61.42196 * 22 9 8 46 46 H 1.08999 * 109.52117 * 301.33948 * 22 9 8 47 47 H 1.09000 * 110.24938 * 281.98631 * 24 23 2 48 48 H 1.09002 * 110.24669 * 43.98587 * 24 23 2 49 49 H 1.08995 * 111.19354 * 267.59676 * 25 24 23 50 50 H 1.09005 * 110.85302 * 143.78977 * 25 24 23 51 51 H 1.08997 * 110.48742 * 216.30704 * 26 25 24 52 52 H 1.09003 * 110.60129 * 93.71933 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 8 4.1450 -0.0209 -0.4441 7 7 4.2149 -1.1796 -2.3348 8 6 5.6750 -1.0765 -2.3963 9 6 6.1850 -1.7977 -3.6455 10 6 5.8854 -3.2969 -3.5265 11 6 6.3686 -4.0082 -4.7943 12 7 7.7871 -3.6897 -5.0072 13 6 8.7103 -4.6886 -5.1652 14 1 8.5455 -5.6535 -4.7088 15 6 9.8580 -4.4611 -5.9122 16 7 9.9161 -3.4338 -6.7330 17 14 11.3201 -5.6128 -5.7523 18 1 11.0032 -6.6816 -4.7713 19 1 11.6146 -6.2249 -7.0728 20 1 12.5043 -4.8476 -5.2862 21 6 8.1962 -2.2791 -5.0466 22 6 7.6948 -1.5846 -3.7766 23 7 2.0184 -0.6905 1.1962 24 6 2.8704 -0.0728 2.2192 25 6 2.7606 -0.9948 3.4560 26 6 2.4043 -2.3512 2.8047 27 6 1.7485 -1.9730 1.4949 28 8 1.0767 -2.7183 0.8137 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5137 -0.8900 32 1 1.6054 -0.2618 -2.1369 33 1 1.7517 -1.7716 -1.2055 34 1 3.7326 -1.6548 -3.0293 35 1 6.1093 -1.5367 -1.5087 36 1 5.9636 -0.0263 -2.4392 37 1 5.6838 -1.3966 -4.5264 38 1 4.8123 -3.4488 -3.4107 39 1 6.4064 -3.7039 -2.6599 40 1 5.7852 -3.6671 -5.6495 41 1 6.2496 -5.0853 -4.6769 42 1 10.7182 -3.2747 -7.2547 43 1 9.2833 -2.2151 -5.0933 44 1 7.7638 -1.7977 -5.9239 45 1 8.1987 -2.0076 -2.9076 46 1 7.9081 -0.5174 -3.8372 47 1 3.9024 -0.0244 1.8717 48 1 2.5059 0.9256 2.4610 49 1 1.9670 -0.6632 4.1256 50 1 3.7134 -1.0532 3.9823 51 1 1.7078 -2.9053 3.4340 52 1 3.3047 -2.9386 2.6249 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225149158.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:24 Heat of formation + Delta-G solvation = -64.557628 kcal Electronic energy + Delta-G solvation = -30183.107505 eV Core-core repulsion = 26182.375958 eV Total energy + Delta-G solvation = -4000.731547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.87936 -39.52948 -37.82377 -36.50794 -35.24383 -34.78234 -32.86209 -30.93789 -30.33937 -29.74031 -28.52695 -27.69442 -26.46659 -24.01652 -22.87766 -22.21877 -22.14980 -21.08139 -20.53899 -19.15892 -18.92657 -17.19467 -17.13392 -16.72622 -16.61837 -15.83392 -15.35919 -15.23549 -14.83475 -14.33431 -14.03936 -13.97852 -13.93884 -13.84490 -13.55490 -13.45632 -13.19821 -13.07484 -12.89052 -12.44095 -12.37360 -12.27736 -12.16689 -12.03602 -11.79801 -11.74735 -11.40597 -11.34266 -11.24558 -10.99153 -10.73899 -10.50779 -10.25722 -10.19834 -9.99175 -9.82240 -9.76317 -9.54681 -9.42559 -8.97539 -8.85148 -8.47558 -6.67127 -5.79375 -3.21724 2.44770 2.63771 2.81420 3.21184 3.36755 3.44765 3.47103 4.13373 4.25096 4.49463 4.50905 4.58889 4.59299 4.79820 4.92063 5.04176 5.14011 5.18735 5.23032 5.28031 5.36237 5.37536 5.39456 5.40873 5.43811 5.47965 5.54343 5.60034 5.65118 5.82040 5.85827 5.89523 5.92986 6.04239 6.13966 6.31511 6.42285 6.44073 6.48030 6.59350 6.68387 6.75705 6.81074 6.97770 7.00263 7.35938 7.52768 7.65186 7.79733 8.03938 8.22931 8.45161 9.21405 9.84855 10.41600 11.29221 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020294 B = 0.002201 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.405338 B =12717.912769 C =13064.704527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.174 3.826 3 H 0.095 0.905 4 C -0.164 4.164 5 C 0.513 3.487 6 O -0.545 6.545 7 N -0.726 5.726 8 C 0.125 3.875 9 C -0.090 4.090 10 C -0.127 4.127 11 C 0.145 3.855 12 N -0.592 5.592 13 C -0.251 4.251 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.171 3.829 22 C -0.132 4.132 23 N -0.602 5.602 24 C 0.106 3.894 25 C -0.133 4.133 26 C -0.157 4.157 27 C 0.516 3.484 28 O -0.538 6.538 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.400 0.600 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.016 0.984 41 H 0.052 0.948 42 H 0.253 0.747 43 H 0.088 0.912 44 H 0.017 0.983 45 H 0.057 0.943 46 H 0.050 0.950 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.078 0.922 50 H 0.088 0.912 51 H 0.098 0.902 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.903 9.765 17.076 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.071 3.929 3 H 0.113 0.887 4 C -0.205 4.205 5 C 0.300 3.700 6 O -0.423 6.423 7 N -0.377 5.377 8 C 0.002 3.998 9 C -0.109 4.109 10 C -0.166 4.166 11 C 0.019 3.981 12 N -0.315 5.315 13 C -0.380 4.380 14 H 0.083 0.917 15 C -0.197 4.197 16 N -0.548 5.548 17 Si 0.731 3.269 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.215 1.215 21 C 0.046 3.954 22 C -0.172 4.172 23 N -0.335 5.335 24 C -0.017 4.017 25 C -0.171 4.171 26 C -0.197 4.197 27 C 0.304 3.696 28 O -0.415 6.415 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.235 0.765 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.036 0.964 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.105 0.895 48 H 0.091 0.909 49 H 0.097 0.903 50 H 0.107 0.893 51 H 0.116 0.884 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.685 9.880 17.157 26.547 hybrid contribution 0.675 -0.722 -0.413 1.071 sum -17.010 9.158 16.744 25.565 Atomic orbital electron populations 1.22185 0.94232 1.03811 1.02304 1.20626 0.93653 0.96239 0.82349 0.88700 1.22203 0.93009 1.05201 1.00058 1.20531 0.89752 0.78390 0.81365 1.90620 1.70466 1.42797 1.38414 1.46135 1.08537 1.56461 1.26542 1.21541 0.78603 1.00415 0.99235 1.21365 0.97979 0.95822 0.95733 1.22120 0.98767 0.94840 1.00874 1.20885 0.86736 0.97341 0.93170 1.44057 1.01342 1.02162 1.83969 1.19230 0.99411 0.94094 1.25312 0.91719 1.25047 1.00206 0.98268 0.96202 1.70038 1.27747 1.30844 1.26173 0.86237 0.82950 0.80295 0.77395 1.20262 1.21737 1.21548 1.20762 1.00864 0.82985 0.90832 1.22165 0.93210 0.99514 1.02283 1.48212 1.50185 1.12208 1.22942 1.22169 0.96409 0.96527 0.86616 1.22640 1.03226 0.94145 0.97056 1.22330 1.02810 0.98944 0.95597 1.20877 0.79729 0.81572 0.87467 1.90684 1.40224 1.54585 1.56057 0.90845 0.92161 0.91246 0.87931 0.87336 0.76542 0.91880 0.91941 0.91367 0.93453 0.92267 0.96614 0.92908 0.93701 0.89421 0.96446 0.92456 0.93114 0.89508 0.90895 0.90280 0.89307 0.88366 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.20 37.16 0.34 -0.96 16 2 C 0.17 1.60 2.43 -67.93 -0.17 1.43 16 3 H 0.09 0.83 7.88 -51.93 -0.41 0.42 16 4 C -0.16 -1.59 5.13 -27.88 -0.14 -1.73 16 5 C 0.51 6.35 7.69 -10.98 -0.08 6.27 16 6 O -0.54 -8.01 13.62 5.56 0.08 -7.93 16 7 N -0.73 -8.80 5.27 -60.29 -0.32 -9.12 16 8 C 0.13 1.76 5.06 -4.04 -0.02 1.74 16 9 C -0.09 -1.42 2.19 -90.42 -0.20 -1.62 16 10 C -0.13 -2.12 5.27 -26.45 -0.14 -2.26 16 11 C 0.15 2.99 6.50 -3.71 -0.02 2.97 16 12 N -0.59 -14.73 2.99 -172.32 -0.52 -15.24 16 13 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 14 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 15 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 16 N -0.90 -26.18 11.20 55.49 0.62 -25.56 16 17 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 22 C -0.13 -2.44 5.36 -26.61 -0.14 -2.58 16 23 N -0.60 -5.98 2.21 -164.73 -0.36 -6.35 16 24 C 0.11 0.85 6.81 -3.02 -0.02 0.83 16 25 C -0.13 -0.81 7.19 -25.00 -0.18 -0.99 16 26 C -0.16 -1.28 6.86 -26.74 -0.18 -1.46 16 27 C 0.52 5.91 7.39 -10.86 -0.08 5.83 16 28 O -0.54 -7.85 15.07 5.56 0.08 -7.77 16 29 H 0.07 0.72 6.80 -51.93 -0.35 0.37 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.11 1.21 6.62 -51.93 -0.34 0.86 16 34 H 0.40 4.19 7.65 -40.82 -0.31 3.88 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.67 7.16 -51.93 -0.37 0.30 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.09 2.32 6.06 -51.93 -0.31 2.01 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.09 0.88 6.78 -51.93 -0.35 0.52 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 401.52 15.07 6.05 6.05 Total: -1.00 -32.90 401.52 -9.87 -42.77 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -9.18 Total: 2.08 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -1.29 Total: 4.39 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.58 Total: -56.27 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.16 Total: -15.70 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.90 -9.87 -42.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225149158.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.791 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds