Wall clock time and date at job start Tue Mar 31 2020 20:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47335 * 2 1 4 4 C 1.53000 * 109.47366 * 119.99594 * 2 1 3 5 5 C 1.50696 * 109.47263 * 185.00017 * 4 2 1 6 6 O 1.21280 * 120.00269 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00096 * 180.02562 * 5 4 2 8 8 C 1.46506 * 120.00391 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.46872 * 34.99635 * 8 7 5 10 10 C 1.52999 * 109.46691 * 275.00006 * 8 7 5 11 11 C 1.53006 * 109.46626 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47164 * 59.99702 * 11 10 8 13 13 C 1.53002 * 109.47415 * 300.00027 * 12 11 10 14 14 C 1.52996 * 109.46972 * 59.99860 * 13 12 11 15 15 H 1.09000 * 109.47054 * 60.00300 * 14 13 12 16 16 N 1.46500 * 109.46993 * 180.02562 * 14 13 12 17 17 C 1.36937 * 120.00054 * 275.00012 * 16 14 13 18 18 H 1.07996 * 119.99804 * 0.02562 * 17 16 14 19 19 C 1.38812 * 119.99902 * 179.97438 * 17 16 14 20 20 N 1.31612 * 120.00456 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99798 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46937 * 60.00399 * 21 19 17 23 23 H 1.48495 * 109.47311 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47177 * 300.00574 * 21 19 17 25 25 N 1.46505 * 109.47316 * 240.00190 * 2 1 3 26 26 C 1.46760 * 124.34947 * 119.72639 * 25 2 1 27 27 C 1.54662 * 105.38149 * 162.85627 * 26 25 2 28 28 C 1.54630 * 101.68616 * 25.75943 * 27 26 25 29 29 C 1.34415 * 124.34408 * 300.02261 * 25 2 1 30 30 O 1.21277 * 124.94530 * 0.38583 * 29 25 2 31 31 H 1.08997 * 109.46886 * 299.99824 * 1 2 3 32 32 H 1.09007 * 109.47196 * 60.00360 * 1 2 3 33 33 H 1.09000 * 109.46851 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46821 * 65.00064 * 4 2 1 35 35 H 1.08994 * 109.47586 * 305.00423 * 4 2 1 36 36 H 0.97001 * 120.00215 * 359.97438 * 7 5 4 37 37 H 1.08993 * 109.47839 * 59.99891 * 10 8 7 38 38 H 1.09000 * 109.47160 * 299.99453 * 10 8 7 39 39 H 1.09001 * 109.46998 * 179.97438 * 11 10 8 40 40 H 1.09000 * 109.47050 * 299.99699 * 11 10 8 41 41 H 1.09000 * 109.47140 * 60.00051 * 12 11 10 42 42 H 1.09001 * 109.47230 * 179.97438 * 12 11 10 43 43 H 1.08992 * 109.46974 * 180.02562 * 13 12 11 44 44 H 1.08996 * 109.46550 * 300.00288 * 13 12 11 45 45 H 0.96999 * 120.00261 * 95.00272 * 16 14 13 46 46 H 0.97001 * 120.00410 * 179.97438 * 20 19 17 47 47 H 1.08997 * 110.24468 * 281.98050 * 26 25 2 48 48 H 1.09002 * 110.25032 * 43.98038 * 26 25 2 49 49 H 1.09005 * 111.18953 * 267.59172 * 27 26 25 50 50 H 1.08997 * 110.82364 * 143.77472 * 27 26 25 51 51 H 1.08998 * 110.48713 * 216.31394 * 28 27 26 52 52 H 1.08999 * 110.48440 * 93.66678 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3127 6 8 4.1450 -0.0203 0.4445 7 7 4.2150 -1.1803 2.3343 8 6 5.6750 -1.0765 2.3963 9 1 5.9874 -0.1086 2.0041 10 6 6.3017 -2.1927 1.5583 11 6 7.8265 -2.0838 1.6226 12 6 8.2865 -2.2173 3.0756 13 6 7.6598 -1.1011 3.9137 14 6 6.1350 -1.2099 3.8494 15 1 5.8230 -2.1778 4.2418 16 7 5.5349 -0.1408 4.6513 17 6 5.3591 -0.3118 5.9985 18 1 5.6632 -1.2346 6.4699 19 6 4.7910 0.7014 6.7584 20 7 4.4208 1.8263 6.1841 21 14 4.5505 0.4679 8.5961 22 1 5.8668 0.2306 9.2413 23 1 3.9286 1.6868 9.1728 24 1 3.6645 -0.6996 8.8350 25 7 2.0184 -0.6906 -1.1962 26 6 2.8609 -0.0695 -2.2250 27 6 3.4726 -1.2467 -3.0199 28 6 2.4202 -2.3571 -2.7948 29 6 1.7476 -1.9728 -1.4953 30 8 1.0641 -2.7139 -0.8212 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -1.7714 1.2056 35 1 1.6054 -0.2617 2.1370 36 1 3.7327 -1.6555 3.0289 37 1 5.9743 -2.0974 0.5231 38 1 5.9893 -3.1605 1.9505 39 1 8.2730 -2.8793 1.0259 40 1 8.1385 -1.1160 1.2301 41 1 7.9745 -3.1851 3.4681 42 1 9.3728 -2.1402 3.1214 43 1 7.9879 -1.1960 4.9487 44 1 7.9718 -0.1333 3.5212 45 1 5.2621 0.6882 4.2280 46 1 4.0235 2.5342 6.7150 47 1 2.2559 0.5575 -2.8799 48 1 3.6504 0.5209 -1.7601 49 1 4.4402 -1.5377 -2.6110 50 1 3.5567 -0.9977 -4.0777 51 1 2.9050 -3.3288 -2.7006 52 1 1.6968 -2.3680 -3.6100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229676332.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:19 Heat of formation + Delta-G solvation = -80.110551 kcal Electronic energy + Delta-G solvation = -31287.071473 eV Core-core repulsion = 27285.665501 eV Total energy + Delta-G solvation = -4001.405972 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.66450 -39.49358 -37.82368 -36.30181 -34.82249 -34.04578 -33.63368 -31.15761 -30.34592 -29.42522 -28.14929 -27.51590 -27.09329 -23.73709 -22.97460 -22.00180 -21.89972 -21.06320 -20.08081 -19.51692 -18.69080 -17.26956 -16.87699 -16.71211 -16.35144 -15.97579 -15.29072 -14.79685 -14.72077 -14.14546 -14.01701 -13.84527 -13.74594 -13.67433 -13.59623 -13.39927 -12.97306 -12.95717 -12.79124 -12.65061 -12.24909 -12.14042 -11.92787 -11.81945 -11.63790 -11.55816 -11.16183 -11.09395 -11.07297 -10.92218 -10.83004 -10.75268 -10.54971 -10.33667 -10.20323 -9.75740 -9.64197 -9.57863 -9.36743 -8.92183 -8.64957 -8.51046 -7.00164 -5.79799 -3.09286 2.61061 3.01434 3.08948 3.40730 3.45952 3.46569 3.59664 4.30305 4.43713 4.54330 4.75190 4.82373 4.89416 4.99684 5.06488 5.14347 5.22725 5.26502 5.36066 5.46395 5.48248 5.51474 5.54267 5.59648 5.66521 5.68291 5.71751 5.73054 5.80340 5.83032 5.89142 5.92197 5.95730 5.97942 5.98810 6.11115 6.14571 6.32859 6.45202 6.48704 6.52709 6.58080 6.64714 6.86670 6.93628 7.10925 7.22372 7.65646 7.99287 8.22264 8.37583 8.66702 9.49377 10.05777 10.41219 11.42119 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011710 B = 0.003577 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.463356 B = 7825.106414 C = 9499.482733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.175 3.825 3 H 0.096 0.904 4 C -0.163 4.163 5 C 0.520 3.480 6 O -0.552 6.552 7 N -0.708 5.708 8 C 0.143 3.857 9 H 0.082 0.918 10 C -0.122 4.122 11 C -0.113 4.113 12 C -0.119 4.119 13 C -0.132 4.132 14 C 0.173 3.827 15 H 0.049 0.951 16 N -0.721 5.721 17 C -0.241 4.241 18 H 0.069 0.931 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.286 1.286 25 N -0.598 5.598 26 C 0.104 3.896 27 C -0.129 4.129 28 C -0.156 4.156 29 C 0.514 3.486 30 O -0.540 6.540 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.402 0.598 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.063 0.937 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.085 0.915 51 H 0.096 0.904 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 -6.346 -18.423 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.072 3.928 3 H 0.114 0.886 4 C -0.203 4.203 5 C 0.306 3.694 6 O -0.431 6.431 7 N -0.357 5.357 8 C 0.038 3.962 9 H 0.100 0.900 10 C -0.161 4.161 11 C -0.151 4.151 12 C -0.158 4.158 13 C -0.173 4.173 14 C 0.062 3.938 15 H 0.067 0.933 16 N -0.362 5.362 17 C -0.372 4.372 18 H 0.087 0.913 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 N -0.331 5.331 26 C -0.019 4.019 27 C -0.167 4.167 28 C -0.197 4.197 29 C 0.302 3.698 30 O -0.418 6.418 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.237 0.763 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.081 0.919 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.103 0.897 51 H 0.115 0.885 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.701 -6.283 -18.414 19.531 hybrid contribution -0.349 0.067 1.394 1.438 sum -2.049 -6.215 -17.021 18.235 Atomic orbital electron populations 1.22184 0.94421 1.03626 1.02284 1.20652 0.93529 0.96392 0.82253 0.88589 1.22160 0.93515 1.04654 0.99998 1.20395 0.89514 0.78024 0.81426 1.90573 1.70410 1.43152 1.38936 1.45918 1.07783 1.56036 1.25954 1.21236 0.79050 0.99095 0.96827 0.89976 1.21851 0.95416 0.98848 0.99988 1.21466 0.95144 1.01475 0.97005 1.21579 0.99510 0.99589 0.95080 1.22212 0.97845 0.97550 0.99741 1.20460 0.91502 0.93443 0.88383 0.93295 1.42391 1.72694 1.15836 1.05232 1.19163 1.33852 1.00000 0.84212 0.91300 1.24716 1.01684 0.96336 0.97875 1.69654 1.47394 1.05890 1.34870 0.86311 0.77764 0.76733 0.85603 1.21330 1.21754 1.21303 1.48213 1.50614 1.11846 1.22422 1.22152 0.94537 0.95933 0.89316 1.22589 0.98773 0.94451 1.00913 1.22328 0.99456 1.00918 0.96952 1.20862 0.80173 0.81753 0.87013 1.90677 1.40168 1.54991 1.55930 0.91113 0.92367 0.90978 0.87806 0.87643 0.76342 0.92168 0.92226 0.92506 0.92044 0.92427 0.92720 0.91667 0.92518 0.78171 0.93482 0.91898 0.88631 0.89967 0.89684 0.88519 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 9.20 37.16 0.34 -1.50 16 2 C 0.17 2.18 2.43 -67.93 -0.16 2.01 16 3 H 0.10 1.21 7.88 -51.93 -0.41 0.80 16 4 C -0.16 -2.25 5.13 -27.89 -0.14 -2.39 16 5 C 0.52 8.41 7.66 -10.99 -0.08 8.33 16 6 O -0.55 -9.68 13.30 5.56 0.07 -9.60 16 7 N -0.71 -11.62 4.91 -53.81 -0.26 -11.89 16 8 C 0.14 2.41 1.97 -67.93 -0.13 2.28 16 9 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 10 C -0.12 -1.74 5.50 -26.73 -0.15 -1.89 16 11 C -0.11 -1.46 5.92 -26.73 -0.16 -1.62 16 12 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 13 C -0.13 -2.30 5.50 -26.73 -0.15 -2.44 16 14 C 0.17 3.25 2.29 -67.93 -0.16 3.10 16 15 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 16 N -0.72 -17.12 4.95 -53.43 -0.26 -17.39 16 17 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 18 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 21 Si 0.90 21.90 29.55 -169.99 -5.02 16.88 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 25 N -0.60 -7.23 2.20 -164.73 -0.36 -7.59 16 26 C 0.10 1.02 6.87 -3.03 -0.02 1.00 16 27 C -0.13 -1.05 7.19 -25.00 -0.18 -1.23 16 28 C -0.16 -1.44 6.86 -26.74 -0.18 -1.62 16 29 C 0.51 6.73 7.39 -10.86 -0.08 6.65 16 30 O -0.54 -8.79 15.07 5.56 0.08 -8.71 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.91 6.77 -51.93 -0.35 0.56 16 34 H 0.10 1.51 6.65 -51.93 -0.35 1.17 16 35 H 0.11 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.40 6.51 8.60 -40.82 -0.35 6.16 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.10 1.12 6.74 -51.93 -0.35 0.77 16 49 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 52 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 406.12 15.07 6.12 6.12 Total: -1.00 -31.33 406.12 -9.82 -41.16 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -9.25 Total: 15.71 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.66 Total: 1.96 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: -0.17 Total: -63.52 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.16 Total: -18.31 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.33 -9.82 -41.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229676332.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.955 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds