Wall clock time and date at job start Tue Mar 31 2020 20:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47335 * 2 1 4 4 C 1.53000 * 109.47366 * 119.99594 * 2 1 3 5 5 C 1.50696 * 109.47263 * 185.00017 * 4 2 1 6 6 O 1.21280 * 120.00269 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00096 * 180.02562 * 5 4 2 8 8 C 1.46506 * 120.00391 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.46872 * 34.99635 * 8 7 5 10 10 C 1.52999 * 109.46691 * 275.00006 * 8 7 5 11 11 C 1.53006 * 109.46626 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47164 * 59.99702 * 11 10 8 13 13 C 1.53002 * 109.47415 * 300.00027 * 12 11 10 14 14 C 1.52996 * 109.46972 * 59.99860 * 13 12 11 15 15 H 1.09000 * 109.47054 * 60.00300 * 14 13 12 16 16 N 1.46500 * 109.46993 * 180.02562 * 14 13 12 17 17 C 1.36937 * 120.00054 * 275.00012 * 16 14 13 18 18 H 1.07996 * 119.99804 * 0.02562 * 17 16 14 19 19 C 1.38812 * 119.99902 * 179.97438 * 17 16 14 20 20 N 1.31612 * 120.00456 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99798 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46937 * 60.00399 * 21 19 17 23 23 H 1.48495 * 109.47311 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47177 * 300.00574 * 21 19 17 25 25 N 1.46505 * 109.47316 * 240.00190 * 2 1 3 26 26 C 1.46760 * 124.34947 * 119.72639 * 25 2 1 27 27 C 1.54662 * 105.38149 * 162.85627 * 26 25 2 28 28 C 1.54630 * 101.68616 * 25.75943 * 27 26 25 29 29 C 1.34415 * 124.34408 * 300.02261 * 25 2 1 30 30 O 1.21277 * 124.94530 * 0.38583 * 29 25 2 31 31 H 1.08997 * 109.46886 * 299.99824 * 1 2 3 32 32 H 1.09007 * 109.47196 * 60.00360 * 1 2 3 33 33 H 1.09000 * 109.46851 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46821 * 65.00064 * 4 2 1 35 35 H 1.08994 * 109.47586 * 305.00423 * 4 2 1 36 36 H 0.97001 * 120.00215 * 359.97438 * 7 5 4 37 37 H 1.08993 * 109.47839 * 59.99891 * 10 8 7 38 38 H 1.09000 * 109.47160 * 299.99453 * 10 8 7 39 39 H 1.09001 * 109.46998 * 179.97438 * 11 10 8 40 40 H 1.09000 * 109.47050 * 299.99699 * 11 10 8 41 41 H 1.09000 * 109.47140 * 60.00051 * 12 11 10 42 42 H 1.09001 * 109.47230 * 179.97438 * 12 11 10 43 43 H 1.08992 * 109.46974 * 180.02562 * 13 12 11 44 44 H 1.08996 * 109.46550 * 300.00288 * 13 12 11 45 45 H 0.96999 * 120.00261 * 95.00272 * 16 14 13 46 46 H 0.97001 * 120.00410 * 179.97438 * 20 19 17 47 47 H 1.08997 * 110.24468 * 281.98050 * 26 25 2 48 48 H 1.09002 * 110.25032 * 43.98038 * 26 25 2 49 49 H 1.09005 * 111.18953 * 267.59172 * 27 26 25 50 50 H 1.08997 * 110.82364 * 143.77472 * 27 26 25 51 51 H 1.08998 * 110.48713 * 216.31394 * 28 27 26 52 52 H 1.08999 * 110.48440 * 93.66678 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3127 6 8 4.1450 -0.0203 0.4445 7 7 4.2150 -1.1803 2.3343 8 6 5.6750 -1.0765 2.3963 9 1 5.9874 -0.1086 2.0041 10 6 6.3017 -2.1927 1.5583 11 6 7.8265 -2.0838 1.6226 12 6 8.2865 -2.2173 3.0756 13 6 7.6598 -1.1011 3.9137 14 6 6.1350 -1.2099 3.8494 15 1 5.8230 -2.1778 4.2418 16 7 5.5349 -0.1408 4.6513 17 6 5.3591 -0.3118 5.9985 18 1 5.6632 -1.2346 6.4699 19 6 4.7910 0.7014 6.7584 20 7 4.4208 1.8263 6.1841 21 14 4.5505 0.4679 8.5961 22 1 5.8668 0.2306 9.2413 23 1 3.9286 1.6868 9.1728 24 1 3.6645 -0.6996 8.8350 25 7 2.0184 -0.6906 -1.1962 26 6 2.8609 -0.0695 -2.2250 27 6 3.4726 -1.2467 -3.0199 28 6 2.4202 -2.3571 -2.7948 29 6 1.7476 -1.9728 -1.4953 30 8 1.0641 -2.7139 -0.8212 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.7517 -1.7714 1.2056 35 1 1.6054 -0.2617 2.1370 36 1 3.7327 -1.6555 3.0289 37 1 5.9743 -2.0974 0.5231 38 1 5.9893 -3.1605 1.9505 39 1 8.2730 -2.8793 1.0259 40 1 8.1385 -1.1160 1.2301 41 1 7.9745 -3.1851 3.4681 42 1 9.3728 -2.1402 3.1214 43 1 7.9879 -1.1960 4.9487 44 1 7.9718 -0.1333 3.5212 45 1 5.2621 0.6882 4.2280 46 1 4.0235 2.5342 6.7150 47 1 2.2559 0.5575 -2.8799 48 1 3.6504 0.5209 -1.7601 49 1 4.4402 -1.5377 -2.6110 50 1 3.5567 -0.9977 -4.0777 51 1 2.9050 -3.3288 -2.7006 52 1 1.6968 -2.3680 -3.6100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229676332.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:18 Heat of formation + Delta-G solvation = -99.440470 kcal Electronic energy + Delta-G solvation = -31287.909682 eV Core-core repulsion = 27285.665501 eV Total energy + Delta-G solvation = -4002.244180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.68819 -40.77187 -39.17002 -37.31591 -35.85751 -35.74799 -35.00757 -33.00454 -31.36787 -30.57296 -29.60955 -28.38872 -28.33640 -25.63754 -24.05531 -23.13183 -22.74669 -22.48800 -21.42411 -20.81358 -19.73625 -19.15596 -18.03277 -17.81246 -17.36061 -17.28117 -16.74926 -16.20796 -15.88282 -15.64760 -15.42404 -15.05584 -14.95748 -14.71515 -14.65131 -14.60235 -14.44759 -14.09699 -13.79165 -13.73384 -13.58441 -13.53626 -12.94361 -12.90460 -12.86672 -12.77346 -12.68507 -12.40138 -12.27335 -12.17896 -12.08573 -12.07258 -12.00216 -11.79921 -11.64465 -11.44567 -11.11688 -10.96588 -10.62478 -10.57838 -9.87776 -9.60502 -8.99627 -7.91999 -5.20548 1.47836 1.49317 1.55327 1.63836 1.74361 2.12949 2.31119 2.56292 3.40999 3.47042 3.66417 3.69923 3.74789 3.82835 3.86221 4.08920 4.12268 4.16240 4.25000 4.27778 4.31763 4.37027 4.42484 4.51158 4.53402 4.58126 4.65378 4.69157 4.71583 4.74933 4.81871 4.91356 4.94827 4.98034 5.01158 5.08237 5.17329 5.22249 5.22953 5.26924 5.27924 5.30098 5.46252 5.51974 5.57764 5.69297 5.72059 6.27992 6.30593 6.64280 7.24659 7.33267 7.35063 8.08779 8.33258 9.30693 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011710 B = 0.003577 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.463356 B = 7825.106414 C = 9499.482733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.093 0.907 4 C -0.155 4.155 5 C 0.515 3.485 6 O -0.566 6.566 7 N -0.711 5.711 8 C 0.153 3.847 9 H 0.056 0.944 10 C -0.112 4.112 11 C -0.108 4.108 12 C -0.110 4.110 13 C -0.127 4.127 14 C 0.172 3.828 15 H 0.051 0.949 16 N -0.730 5.730 17 C -0.235 4.235 18 H 0.076 0.924 19 C -0.070 4.070 20 N -0.967 5.967 21 Si 0.967 3.033 22 H -0.281 1.281 23 H -0.300 1.300 24 H -0.278 1.278 25 N -0.600 5.600 26 C 0.099 3.901 27 C -0.118 4.118 28 C -0.149 4.149 29 C 0.500 3.500 30 O -0.580 6.580 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.403 0.597 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.042 0.958 45 H 0.369 0.631 46 H 0.249 0.751 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.118 0.882 51 H 0.100 0.900 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.025 -7.779 -19.908 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.068 3.932 3 H 0.111 0.889 4 C -0.195 4.195 5 C 0.302 3.698 6 O -0.446 6.446 7 N -0.360 5.360 8 C 0.047 3.953 9 H 0.074 0.926 10 C -0.151 4.151 11 C -0.146 4.146 12 C -0.148 4.148 13 C -0.168 4.168 14 C 0.063 3.937 15 H 0.069 0.931 16 N -0.369 5.369 17 C -0.366 4.366 18 H 0.094 0.906 19 C -0.263 4.263 20 N -0.618 5.618 21 Si 0.797 3.203 22 H -0.208 1.208 23 H -0.226 1.226 24 H -0.204 1.204 25 N -0.332 5.332 26 C -0.023 4.023 27 C -0.156 4.156 28 C -0.189 4.189 29 C 0.289 3.711 30 O -0.462 6.462 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.237 0.763 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.201 0.799 46 H 0.057 0.943 47 H 0.105 0.895 48 H 0.093 0.907 49 H 0.089 0.911 50 H 0.137 0.863 51 H 0.119 0.881 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.973 -7.752 -19.926 21.403 hybrid contribution -0.516 0.514 1.823 1.963 sum -1.489 -7.238 -18.103 19.553 Atomic orbital electron populations 1.22089 0.93158 1.02779 1.03442 1.20678 0.94489 0.95992 0.82089 0.88866 1.22126 0.91767 1.04472 1.01159 1.20802 0.90429 0.77518 0.81040 1.90564 1.70925 1.43674 1.39412 1.45980 1.07747 1.56134 1.26129 1.21081 0.79512 0.98981 0.95682 0.92597 1.21770 0.96392 0.97879 0.99051 1.21460 0.93896 1.02406 0.96840 1.21517 1.00417 0.98205 0.94701 1.22075 0.96530 0.98642 0.99530 1.20655 0.92341 0.91814 0.88898 0.93105 1.42531 1.73144 1.16351 1.04876 1.19522 1.31942 0.99749 0.85426 0.90647 1.25441 1.02646 0.96385 1.01796 1.69815 1.49235 1.06734 1.36027 0.85314 0.77719 0.76340 0.80976 1.20758 1.22629 1.20392 1.48367 1.50439 1.11923 1.22458 1.22310 0.94177 0.96725 0.89116 1.22592 0.97565 0.92960 1.02477 1.22361 0.99868 1.01307 0.95337 1.21591 0.79808 0.81605 0.88047 1.90647 1.42065 1.55962 1.57499 0.90139 0.91051 0.92676 0.88483 0.87253 0.76289 0.92469 0.91275 0.89577 0.92497 0.91361 0.90752 0.93385 0.93869 0.79919 0.94269 0.89488 0.90717 0.91098 0.86325 0.88125 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 9.20 71.98 0.66 -2.74 16 2 C 0.17 4.28 2.43 44.99 0.11 4.39 16 3 H 0.09 2.37 7.88 -2.39 -0.02 2.36 16 4 C -0.15 -4.39 5.13 29.85 0.15 -4.23 16 5 C 0.51 17.02 7.66 87.66 0.67 17.70 16 6 O -0.57 -20.22 13.30 -3.03 -0.04 -20.26 16 7 N -0.71 -23.78 4.91 -442.53 -2.17 -25.95 16 8 C 0.15 5.17 1.97 44.99 0.09 5.26 16 9 H 0.06 2.20 7.58 -2.39 -0.02 2.18 16 10 C -0.11 -3.03 5.50 30.60 0.17 -2.87 16 11 C -0.11 -2.53 5.92 30.60 0.18 -2.34 16 12 C -0.11 -2.76 5.92 30.59 0.18 -2.58 16 13 C -0.13 -4.34 5.50 30.59 0.17 -4.17 16 14 C 0.17 6.47 2.29 44.99 0.10 6.58 16 15 H 0.05 1.91 8.08 -2.39 -0.02 1.90 16 16 N -0.73 -35.39 4.95 -322.95 -1.60 -36.99 16 17 C -0.23 -12.52 9.93 84.03 0.83 -11.69 16 18 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 19 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 20 N -0.97 -58.38 13.06 21.65 0.28 -58.09 16 21 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 25 N -0.60 -14.19 2.20 -793.68 -1.74 -15.93 16 26 C 0.10 1.82 6.87 86.90 0.60 2.41 16 27 C -0.12 -1.63 7.19 31.72 0.23 -1.41 16 28 C -0.15 -2.43 6.86 30.59 0.21 -2.22 16 29 C 0.50 12.78 7.39 87.90 0.65 13.42 16 30 O -0.58 -19.09 15.07 -3.02 -0.05 -19.14 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.05 1.41 6.77 -2.39 -0.02 1.39 16 34 H 0.10 2.92 6.65 -2.39 -0.02 2.91 16 35 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.40 13.31 8.60 -92.71 -0.80 12.51 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.37 20.01 7.80 -92.71 -0.72 19.28 16 46 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 47 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.07 1.72 6.74 -2.39 -0.02 1.70 16 49 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 50 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 52 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -69.26 406.12 1.57 -67.69 By element: Atomic # 1 Polarization: 49.75 SS G_CDS: -0.61 Total: 49.14 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 5.47 Total: 12.05 kcal Atomic # 7 Polarization: -131.73 SS G_CDS: -5.23 Total: -136.96 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -0.09 Total: -39.39 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -69.26 1.57 -67.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229676332.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.748 kcal (2) G-P(sol) polarization free energy of solvation -69.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds