Wall clock time and date at job start Tue Mar 31 2020 20:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46791 * 2 1 4 4 C 1.52995 * 109.47341 * 120.00263 * 2 1 3 5 5 C 1.50702 * 109.46812 * 295.00122 * 4 2 1 6 6 O 1.21277 * 120.00379 * 359.97438 * 5 4 2 7 7 N 1.34784 * 120.00038 * 180.02562 * 5 4 2 8 8 C 1.46494 * 120.00058 * 179.97438 * 7 5 4 9 9 C 1.53117 * 109.52364 * 274.87194 * 8 7 5 10 10 C 1.53045 * 109.27588 * 182.50681 * 9 8 7 11 11 N 1.46851 * 109.57757 * 59.08198 * 10 9 8 12 12 C 1.46896 * 110.99933 * 174.19162 * 11 10 9 13 13 C 1.50698 * 109.47433 * 294.20911 * 12 11 10 14 14 O 1.21286 * 119.99739 * 0.02562 * 13 12 11 15 15 N 1.34770 * 119.99984 * 180.02562 * 13 12 11 16 16 C 1.37094 * 120.00087 * 180.02562 * 15 13 12 17 17 H 1.07996 * 119.99868 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00178 * 179.97438 * 16 15 13 19 19 N 1.31415 * 120.00063 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00066 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47087 * 60.00389 * 20 18 16 22 22 H 1.48498 * 109.47058 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47328 * 300.00158 * 20 18 16 24 24 C 1.46852 * 111.19807 * 298.29591 * 11 10 9 25 25 C 1.53036 * 109.52590 * 61.73871 * 24 11 10 26 26 C 1.52996 * 109.47138 * 240.00475 * 2 1 3 27 27 C 1.53000 * 117.49997 * 179.97438 * 26 2 1 28 28 C 1.53002 * 60.02940 * 252.49592 * 27 26 2 29 29 H 1.09004 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47356 * 299.99703 * 1 2 3 31 31 H 1.09001 * 109.47494 * 59.99823 * 1 2 3 32 32 H 1.09003 * 109.47238 * 54.99814 * 4 2 1 33 33 H 1.08998 * 109.47246 * 175.00238 * 4 2 1 34 34 H 0.97007 * 119.99605 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.52368 * 35.00008 * 8 7 5 36 36 H 1.09006 * 109.50131 * 302.37922 * 9 8 7 37 37 H 1.08997 * 109.50602 * 62.49823 * 9 8 7 38 38 H 1.08997 * 109.40773 * 299.06768 * 10 9 8 39 39 H 1.08996 * 109.45158 * 179.12699 * 10 9 8 40 40 H 1.08997 * 109.47101 * 54.21886 * 12 11 10 41 41 H 1.09006 * 109.46961 * 174.21059 * 12 11 10 42 42 H 0.97001 * 120.00119 * 0.02562 * 15 13 12 43 43 H 0.97001 * 119.99751 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.45817 * 301.72436 * 24 11 10 45 45 H 1.08993 * 109.45328 * 181.75193 * 24 11 10 46 46 H 1.08997 * 109.50529 * 180.88349 * 25 24 11 47 47 H 1.08995 * 109.50498 * 60.76241 * 25 24 11 48 48 H 1.09008 * 115.56055 * 325.68508 * 26 2 1 49 49 H 1.09002 * 117.49833 * 359.97438 * 27 26 2 50 50 H 1.09002 * 117.49953 * 144.99738 * 27 26 2 51 51 H 1.09000 * 117.49996 * 107.50493 * 28 27 26 52 52 H 1.08999 * 117.49664 * 252.51862 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6413 0.0570 2.4765 6 8 1.0116 1.0873 2.3633 7 7 1.9853 -0.3914 3.7001 8 6 1.5982 0.3654 4.8932 9 6 2.6368 1.4569 5.1661 10 6 2.2605 2.2032 6.4482 11 7 2.2091 1.2578 7.5708 12 6 1.9860 1.9608 8.8411 13 6 3.1780 2.8292 9.1509 14 8 4.1205 2.8598 8.3882 15 7 3.1967 3.5717 10.2755 16 6 4.2809 4.3621 10.5571 17 1 5.1201 4.3894 9.8780 18 6 4.3000 5.1281 11.7163 19 7 3.2785 5.0952 12.5424 20 14 5.7776 6.2045 12.1003 21 1 5.9633 7.1971 11.0114 22 1 5.5522 6.9146 13.3848 23 1 6.9921 5.3572 12.2102 24 6 1.1849 0.2285 7.3517 25 6 1.5300 -0.5777 6.0976 26 6 2.0399 -0.7211 -1.2493 27 6 3.5550 -0.8274 -1.4346 28 6 2.7419 0.1229 -2.3160 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6054 -1.7198 1.2951 33 1 3.1263 -0.7994 1.2055 34 1 2.4893 -1.2154 3.7907 35 1 0.6220 0.8233 4.7333 36 1 3.6200 1.0018 5.2863 37 1 2.6585 2.1558 4.3300 38 1 1.2839 2.6704 6.3219 39 1 3.0065 2.9708 6.6536 40 1 1.0944 2.5827 8.7605 41 1 1.8497 1.2323 9.6404 42 1 2.4431 3.5469 10.8857 43 1 3.2920 5.6297 13.3518 44 1 0.2133 0.7050 7.2212 45 1 1.1498 -0.4378 8.2136 46 1 0.7613 -1.3314 5.9265 47 1 2.4952 -1.0657 6.2328 48 1 1.4309 -1.5583 -1.5906 49 1 4.1883 -0.3832 -0.6668 50 1 3.9430 -1.7349 -1.8974 51 1 2.8404 1.1920 -2.1278 52 1 2.5947 -0.1595 -3.3584 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230386769.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:42 Heat of formation + Delta-G solvation = -60.119186 kcal Electronic energy + Delta-G solvation = -29132.370995 eV Core-core repulsion = 25131.831913 eV Total energy + Delta-G solvation = -4000.539082 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.35277 -39.10930 -38.17036 -37.42932 -35.00562 -33.83518 -33.40712 -31.74387 -31.15324 -30.69244 -28.37782 -26.86220 -24.59861 -23.80519 -23.10637 -22.74851 -22.43033 -20.66702 -20.12107 -19.62348 -19.16529 -17.83786 -17.22690 -16.54423 -15.99791 -15.87993 -15.46943 -15.29696 -14.92723 -14.84947 -14.55976 -14.07647 -14.00431 -13.75472 -13.65374 -13.41303 -13.27897 -13.08545 -12.97718 -12.35625 -12.25640 -11.92731 -11.86126 -11.70845 -11.58321 -11.51069 -11.46583 -11.16222 -11.11517 -11.06520 -11.02509 -10.61189 -10.54275 -10.48765 -10.42182 -10.31257 -10.19554 -9.75416 -9.45343 -9.06782 -8.40855 -7.95577 -7.81559 -6.39767 -3.80457 2.53373 3.00048 3.21376 3.26916 3.31301 3.45294 3.92519 4.00773 4.25521 4.26336 4.45845 4.54616 4.61455 4.70325 4.81910 4.91340 4.93810 5.06927 5.09117 5.14729 5.20718 5.27292 5.30981 5.34769 5.36624 5.46410 5.51351 5.54473 5.58471 5.66242 5.71418 5.76159 5.77474 5.82726 5.84038 5.86093 6.00146 6.02959 6.07868 6.14021 6.17568 6.29559 6.36243 6.50699 6.57738 7.30536 7.39658 7.45424 7.56888 8.08401 8.13291 8.64120 9.20119 9.56771 10.08780 10.77901 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021202 B = 0.001826 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.344123 B =15333.236971 C =16117.478152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 H 0.079 0.921 4 C -0.136 4.136 5 C 0.511 3.489 6 O -0.537 6.537 7 N -0.727 5.727 8 C 0.143 3.857 9 C -0.119 4.119 10 C 0.055 3.945 11 N -0.516 5.516 12 C 0.046 3.954 13 C 0.444 3.556 14 O -0.577 6.577 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.058 3.942 25 C -0.120 4.120 26 C -0.149 4.149 27 C -0.183 4.183 28 C -0.179 4.179 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.399 0.601 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.023 0.977 39 H 0.106 0.894 40 H 0.047 0.953 41 H 0.088 0.912 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.032 0.968 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.104 0.896 49 H 0.095 0.905 50 H 0.093 0.907 51 H 0.094 0.906 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.442 -15.698 -21.899 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.063 4.063 3 H 0.097 0.903 4 C -0.176 4.176 5 C 0.298 3.702 6 O -0.414 6.414 7 N -0.377 5.377 8 C 0.039 3.961 9 C -0.158 4.158 10 C -0.073 4.073 11 N -0.241 5.241 12 C -0.085 4.085 13 C 0.229 3.771 14 O -0.461 6.461 15 N -0.201 5.201 16 C -0.428 4.428 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.544 5.544 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.071 4.071 25 C -0.158 4.158 26 C -0.167 4.167 27 C -0.220 4.220 28 C -0.216 4.216 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.232 0.768 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.124 0.876 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.050 0.950 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.122 0.878 49 H 0.113 0.887 50 H 0.111 0.889 51 H 0.113 0.887 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.847 -15.054 -22.278 27.516 hybrid contribution -0.261 0.452 0.717 0.887 sum -6.108 -14.602 -21.561 26.747 Atomic orbital electron populations 1.21916 0.94285 1.01351 1.03143 1.20449 0.96524 0.98910 0.90425 0.90293 1.21744 1.02997 1.00218 0.92592 1.20721 0.79044 0.85774 0.84678 1.90680 1.39732 1.24436 1.86522 1.46163 1.57949 1.27696 1.05932 1.21103 0.99112 0.92462 0.83461 1.21902 0.99299 0.97412 0.97173 1.22212 1.00659 0.95291 0.89109 1.61536 1.46372 1.14455 1.01701 1.21831 0.96997 0.97314 0.92363 1.19743 0.89097 0.84332 0.83906 1.90480 1.37637 1.68593 1.49428 1.41861 1.19342 1.39049 1.19856 1.19643 0.97575 1.19671 1.05935 0.87987 1.25254 0.98443 0.98433 0.95817 1.69607 1.30409 1.41643 1.12705 0.85923 0.81019 0.79745 0.77555 1.19940 1.21009 1.19925 1.22027 0.92912 0.94599 0.97546 1.21825 1.02799 0.97631 0.93539 1.22418 0.94669 1.01939 0.97717 1.22970 0.93888 1.01788 1.03326 1.23021 1.04579 0.97803 0.96197 0.93398 0.90502 0.92851 0.88971 0.88887 0.76756 0.89908 0.90815 0.91488 0.95901 0.87576 0.93477 0.89334 0.77502 0.91862 0.95030 0.90335 0.91257 0.90390 0.87830 0.88697 0.88877 0.88704 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.92 37.16 0.33 -0.97 16 2 C -0.04 -0.36 2.19 -90.63 -0.20 -0.56 16 3 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 4 C -0.14 -0.98 5.09 -27.88 -0.14 -1.13 16 5 C 0.51 5.40 7.51 -10.98 -0.08 5.31 16 6 O -0.54 -7.75 13.63 5.56 0.08 -7.67 16 7 N -0.73 -6.82 5.08 -53.68 -0.27 -7.10 16 8 C 0.14 1.67 2.52 -67.81 -0.17 1.50 16 9 C -0.12 -1.71 5.68 -26.65 -0.15 -1.86 16 10 C 0.06 0.93 5.10 -3.83 -0.02 0.91 16 11 N -0.52 -8.51 4.40 -236.11 -1.04 -9.54 16 12 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 13 C 0.44 10.46 7.46 -10.99 -0.08 10.37 16 14 O -0.58 -15.45 13.90 5.55 0.08 -15.37 16 15 N -0.56 -14.31 5.29 -10.97 -0.06 -14.37 16 16 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 17 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 20 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.06 0.72 5.46 -3.83 -0.02 0.70 16 25 C -0.12 -1.23 5.57 -26.65 -0.15 -1.38 16 26 C -0.15 -0.99 5.15 -90.59 -0.47 -1.46 16 27 C -0.18 -1.12 9.67 -26.73 -0.26 -1.38 16 28 C -0.18 -1.18 10.18 -26.69 -0.27 -1.45 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.85 5.95 -51.93 -0.31 0.54 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.57 7.13 -51.93 -0.37 0.20 16 34 H 0.40 2.64 8.60 -40.82 -0.35 2.29 16 35 H 0.08 1.11 7.58 -51.93 -0.39 0.71 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.11 2.19 5.78 -51.93 -0.30 1.89 16 40 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 41 H 0.09 1.41 7.99 -51.93 -0.41 1.00 16 42 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 43 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.10 0.63 8.11 -51.92 -0.42 0.20 16 49 H 0.09 0.60 7.59 -51.93 -0.39 0.20 16 50 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.09 0.66 8.05 -51.93 -0.42 0.24 16 52 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 410.90 15.07 6.19 6.19 Total: -1.00 -32.39 410.90 -10.37 -42.76 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -9.09 Total: 11.41 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.95 Total: 1.43 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.65 Total: -54.88 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.15 Total: -23.04 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.39 -10.37 -42.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230386769.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.359 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds