Wall clock time and date at job start Tue Mar 31 2020 20:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47610 * 2 1 4 4 C 1.53002 * 109.46876 * 119.99971 * 2 1 3 5 5 C 1.50695 * 109.47150 * 294.99951 * 4 2 1 6 6 N 1.34779 * 120.00370 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00248 * 359.97438 * 5 4 2 8 8 C 1.50694 * 109.46805 * 239.99634 * 2 1 3 9 9 O 1.21283 * 119.99974 * 250.81408 * 8 2 1 10 10 N 1.34781 * 120.00098 * 70.81794 * 8 2 1 11 11 C 1.46926 * 120.63117 * 183.88707 * 10 8 2 12 12 C 1.53189 * 108.77506 * 233.58710 * 11 10 8 13 13 C 1.53042 * 109.31297 * 305.36657 * 12 11 10 14 14 C 1.52996 * 109.46255 * 181.38636 * 13 12 11 15 15 H 1.09001 * 109.99964 * 186.30348 * 14 13 12 16 16 C 1.54311 * 109.77346 * 307.45830 * 14 13 12 17 17 C 1.55163 * 102.86319 * 141.88247 * 16 14 13 18 18 C 1.54904 * 101.58266 * 324.30682 * 17 16 14 19 19 N 1.47030 * 109.88228 * 65.20874 * 14 13 12 20 20 C 1.36930 * 125.64821 * 61.67636 * 19 14 13 21 21 H 1.08004 * 120.00182 * 14.65765 * 20 19 14 22 22 C 1.38817 * 119.99830 * 194.65263 * 20 19 14 23 23 N 1.31613 * 119.99899 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99825 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47340 * 90.00389 * 24 22 20 26 26 H 1.48506 * 109.46955 * 210.00048 * 24 22 20 27 27 H 1.48503 * 109.47115 * 329.99741 * 24 22 20 28 28 C 1.53042 * 109.53835 * 61.36080 * 13 12 11 29 29 C 1.46923 * 120.62874 * 3.86274 * 10 8 2 30 30 H 1.09004 * 109.46888 * 67.99900 * 1 2 3 31 31 H 1.08992 * 109.47580 * 188.00478 * 1 2 3 32 32 H 1.09002 * 109.46673 * 308.00773 * 1 2 3 33 33 H 1.09004 * 109.46829 * 54.99484 * 4 2 1 34 34 H 1.08991 * 109.47107 * 174.99772 * 4 2 1 35 35 H 0.97004 * 119.99884 * 359.97438 * 6 5 4 36 36 H 0.96994 * 120.00611 * 180.02562 * 6 5 4 37 37 H 1.09004 * 109.58542 * 113.79866 * 11 10 8 38 38 H 1.08999 * 109.58879 * 353.37332 * 11 10 8 39 39 H 1.08996 * 109.50108 * 185.41673 * 12 11 10 40 40 H 1.08998 * 109.50067 * 65.31261 * 12 11 10 41 41 H 1.09009 * 109.45857 * 301.35793 * 13 12 11 42 42 H 1.09002 * 110.92550 * 23.47231 * 16 14 13 43 43 H 1.08996 * 110.59312 * 260.14325 * 16 14 13 44 44 H 1.08997 * 111.00534 * 206.22721 * 17 16 14 45 45 H 1.09001 * 111.03294 * 82.39525 * 17 16 14 46 46 H 1.09003 * 110.36529 * 278.17134 * 18 17 16 47 47 H 1.08998 * 110.45945 * 155.89731 * 18 17 16 48 48 H 0.96998 * 119.99785 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.49326 * 58.59554 * 28 13 12 50 50 H 1.09001 * 109.49614 * 178.68408 * 28 13 12 51 51 H 1.08992 * 109.58705 * 246.19993 * 29 10 8 52 52 H 1.08998 * 109.58543 * 6.62956 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4766 6 7 1.9852 -0.3913 3.7002 7 8 1.0117 1.0875 2.3633 8 6 2.0323 -0.7105 -1.2304 9 8 2.5598 -1.7979 -1.1298 10 7 1.8953 -0.1374 -2.4426 11 6 2.3023 -0.8533 -3.6594 12 6 3.2681 0.0324 -4.4528 13 6 2.6121 1.3905 -4.7123 14 6 3.5602 2.2658 -5.5344 15 1 3.1508 3.2715 -5.6296 16 6 4.9429 2.3217 -4.8516 17 6 5.9233 2.2924 -6.0540 18 6 5.1828 1.3510 -7.0362 19 7 3.7549 1.6769 -6.8674 20 6 2.7736 1.4707 -7.7999 21 1 1.8137 1.9532 -7.6894 22 6 3.0126 0.6416 -8.8873 23 7 4.1823 0.0533 -9.0217 24 14 1.6741 0.3609 -10.1597 25 1 1.7869 1.3834 -11.2306 26 1 1.8284 -0.9931 -10.7500 27 1 0.3431 0.4690 -9.5101 28 6 2.3121 2.0774 -3.3780 29 6 1.3356 1.2148 -2.5724 30 1 -0.3633 0.3850 -0.9529 31 1 -0.3634 -1.0175 0.1431 32 1 -0.3633 0.6328 0.8098 33 1 1.6052 -1.7198 1.2952 34 1 3.1262 -0.7995 1.2056 35 1 2.4891 -1.2153 3.7909 36 1 1.7283 0.1094 4.4902 37 1 1.4235 -1.0711 -4.2664 38 1 2.8002 -1.7838 -3.3866 39 1 3.5026 -0.4459 -5.4037 40 1 4.1848 0.1746 -3.8806 41 1 1.6825 1.2456 -5.2629 42 1 5.0951 1.4547 -4.2088 43 1 5.0540 3.2468 -4.2859 44 1 6.8865 1.8737 -5.7626 45 1 6.0457 3.2869 -6.4832 46 1 5.3675 0.3090 -6.7749 47 1 5.4978 1.5458 -8.0613 48 1 4.3491 -0.5263 -9.7813 49 1 3.2380 2.2004 -2.8159 50 1 1.8664 3.0545 -3.5639 51 1 0.3781 1.1657 -3.0908 52 1 1.1957 1.6489 -1.5824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230582345.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:10 Heat of formation + Delta-G solvation = -62.682599 kcal Electronic energy + Delta-G solvation = -31036.335400 eV Core-core repulsion = 27035.685161 eV Total energy + Delta-G solvation = -4000.650240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.63200 -39.60432 -38.40377 -36.35229 -34.47631 -34.00431 -32.93368 -32.07083 -30.78960 -29.34896 -28.17815 -27.55204 -24.99313 -24.39422 -23.44751 -22.68721 -21.26401 -20.61735 -19.93860 -19.09055 -18.30622 -17.77981 -17.27283 -16.72068 -16.31898 -15.83233 -15.59988 -15.17004 -14.91975 -14.64264 -14.23800 -13.98122 -13.88554 -13.80924 -13.55134 -13.30621 -12.89384 -12.61934 -12.47965 -12.16058 -12.11793 -11.99657 -11.83434 -11.54587 -11.37752 -11.32073 -11.15377 -10.94442 -10.88085 -10.72087 -10.35549 -10.22196 -10.15251 -10.06416 -10.02476 -9.84651 -9.68528 -9.62276 -9.43493 -9.40009 -8.55948 -8.44087 -6.72757 -5.72094 -3.06532 2.32910 2.67733 2.94243 3.36207 3.39545 3.45459 3.46828 4.29722 4.50248 4.55849 4.72510 4.80753 4.95374 5.13433 5.20796 5.25681 5.39708 5.43285 5.43703 5.48875 5.49468 5.61179 5.70350 5.73712 5.76427 5.79008 5.87377 5.92450 5.95487 6.03997 6.08133 6.20458 6.24503 6.32898 6.40861 6.42956 6.53392 6.58110 6.62391 6.67262 6.80112 6.95284 6.99580 7.09069 7.18191 7.53237 7.58117 7.66774 7.83543 7.92955 8.23279 8.32331 9.23546 9.85232 10.55289 11.40176 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018872 B = 0.002738 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.293561 B =10222.272759 C =10736.327868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 H 0.103 0.897 4 C -0.124 4.124 5 C 0.519 3.481 6 N -0.858 5.858 7 O -0.541 6.541 8 C 0.517 3.483 9 O -0.552 6.552 10 N -0.602 5.602 11 C 0.110 3.890 12 C -0.118 4.118 13 C -0.093 4.093 14 C 0.167 3.833 15 H 0.030 0.970 16 C -0.131 4.131 17 C -0.150 4.150 18 C 0.174 3.826 19 N -0.593 5.593 20 C -0.223 4.223 21 H 0.072 0.928 22 C -0.004 4.004 23 N -0.917 5.917 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C -0.130 4.130 29 C 0.104 3.896 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.402 0.598 36 H 0.400 0.600 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.024 0.976 47 H 0.066 0.934 48 H 0.252 0.748 49 H 0.063 0.937 50 H 0.071 0.929 51 H 0.069 0.931 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 0.222 22.012 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 H 0.121 0.879 4 C -0.165 4.165 5 C 0.304 3.696 6 N -0.422 5.422 7 O -0.418 6.418 8 C 0.305 3.695 9 O -0.430 6.430 10 N -0.334 5.334 11 C -0.011 4.011 12 C -0.156 4.156 13 C -0.113 4.113 14 C 0.060 3.940 15 H 0.048 0.952 16 C -0.168 4.168 17 C -0.189 4.189 18 C 0.050 3.950 19 N -0.317 5.317 20 C -0.352 4.352 21 H 0.090 0.910 22 C -0.201 4.201 23 N -0.564 5.564 24 Si 0.736 3.264 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.169 4.169 29 C -0.018 4.018 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.231 0.769 36 H 0.231 0.769 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.042 0.958 47 H 0.085 0.915 48 H 0.062 0.938 49 H 0.082 0.918 50 H 0.089 0.911 51 H 0.087 0.913 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.355 0.154 21.541 21.801 hybrid contribution -0.536 -0.392 -0.395 0.773 sum -3.891 -0.238 21.146 21.502 Atomic orbital electron populations 1.21941 0.92213 1.02817 1.03764 1.20995 0.98394 1.00834 0.91381 0.87909 1.21477 1.03762 1.00223 0.90991 1.20717 0.78261 0.85309 0.85282 1.43895 1.60293 1.29663 1.08301 1.90720 1.39733 1.24589 1.86751 1.20519 0.78556 0.85861 0.84526 1.90664 1.44432 1.21668 1.86264 1.48138 1.62116 1.16866 1.06309 1.21741 0.98896 0.96107 0.84378 1.21910 0.97131 0.95861 1.00671 1.21574 1.00483 0.95382 0.93896 1.20922 0.92582 0.94449 0.86092 0.95198 1.22722 0.96156 1.00469 0.97502 1.23008 0.97512 1.00738 0.97645 1.21384 0.82694 0.94012 0.96951 1.44481 1.04180 1.72720 1.10283 1.18915 0.93573 1.21796 1.00927 0.90996 1.24861 0.97136 0.98548 0.99540 1.69932 1.21273 1.34348 1.30819 0.86222 0.81281 0.77230 0.81644 1.21730 1.21753 1.20717 1.22003 0.99090 0.98511 0.97269 1.21892 0.97015 0.81857 1.01086 0.91824 0.92606 0.89687 0.87893 0.88111 0.76931 0.76928 0.91654 0.89601 0.89010 0.92238 0.91025 0.91261 0.92904 0.92714 0.92644 0.95770 0.91520 0.93785 0.91820 0.91063 0.91319 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.48 37.16 0.32 -1.18 16 2 C -0.09 -1.00 1.52 -91.77 -0.14 -1.14 16 3 H 0.10 1.08 6.73 -51.93 -0.35 0.74 16 4 C -0.12 -1.10 4.47 -27.88 -0.12 -1.22 16 5 C 0.52 4.57 7.85 -10.99 -0.09 4.48 16 6 N -0.86 -4.34 8.87 31.22 0.28 -4.06 16 7 O -0.54 -6.64 14.83 5.55 0.08 -6.56 16 8 C 0.52 7.09 6.95 -10.99 -0.08 7.01 16 9 O -0.55 -9.16 15.46 5.56 0.09 -9.07 16 10 N -0.60 -8.26 2.97 -172.78 -0.51 -8.77 16 11 C 0.11 1.74 6.44 -3.71 -0.02 1.71 16 12 C -0.12 -2.04 4.86 -26.61 -0.13 -2.17 16 13 C -0.09 -1.57 1.96 -90.58 -0.18 -1.74 16 14 C 0.17 3.23 2.88 -66.96 -0.19 3.04 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C -0.13 -2.23 5.42 -24.90 -0.14 -2.37 16 17 C -0.15 -2.82 7.08 -24.58 -0.17 -3.00 16 18 C 0.17 4.11 5.41 -2.53 -0.01 4.10 16 19 N -0.59 -14.19 2.59 -162.58 -0.42 -14.61 16 20 C -0.22 -5.92 9.71 -15.06 -0.15 -6.07 16 21 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 22 C 0.00 -0.11 5.47 -17.43 -0.10 -0.21 16 23 N -0.92 -26.25 10.59 55.49 0.59 -25.67 16 24 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 C -0.13 -1.71 5.19 -26.61 -0.14 -1.85 16 29 C 0.10 1.23 5.08 -3.72 -0.02 1.21 16 30 H 0.06 0.61 6.45 -51.93 -0.33 0.28 16 31 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 32 H 0.08 0.89 6.14 -51.93 -0.32 0.57 16 33 H 0.10 0.86 8.11 -51.93 -0.42 0.43 16 34 H 0.10 0.85 8.11 -51.93 -0.42 0.43 16 35 H 0.40 0.99 8.83 -40.82 -0.36 0.63 16 36 H 0.40 1.66 8.93 -40.82 -0.36 1.29 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.43 7.00 -51.93 -0.36 1.07 16 39 H 0.09 1.94 7.74 -51.93 -0.40 1.54 16 40 H 0.06 1.03 5.84 -51.93 -0.30 0.72 16 41 H 0.07 1.36 7.84 -51.92 -0.41 0.95 16 42 H 0.07 1.16 5.33 -51.93 -0.28 0.89 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.02 0.62 8.05 -51.93 -0.42 0.20 16 47 H 0.07 1.78 6.95 -51.93 -0.36 1.42 16 48 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.06 0.83 7.53 -51.93 -0.39 0.44 16 50 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 51 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 52 H 0.08 0.83 5.16 -51.93 -0.27 0.56 16 LS Contribution 390.93 15.07 5.89 5.89 Total: -1.00 -32.42 390.93 -9.08 -41.49 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -8.69 Total: 4.07 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.36 Total: 0.60 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.07 Total: -53.11 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.17 Total: -15.64 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.42 -9.08 -41.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230582345.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.188 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds