Wall clock time and date at job start Tue Mar 31 2020 20:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47610 * 2 1 4 4 C 1.53002 * 109.46876 * 119.99971 * 2 1 3 5 5 C 1.50695 * 109.47150 * 294.99951 * 4 2 1 6 6 N 1.34779 * 120.00370 * 180.02562 * 5 4 2 7 7 O 1.21286 * 120.00248 * 359.97438 * 5 4 2 8 8 C 1.50694 * 109.46805 * 239.99634 * 2 1 3 9 9 O 1.21283 * 119.99974 * 250.81408 * 8 2 1 10 10 N 1.34781 * 120.00098 * 70.81794 * 8 2 1 11 11 C 1.46926 * 120.63117 * 183.88707 * 10 8 2 12 12 C 1.53189 * 108.77506 * 233.58710 * 11 10 8 13 13 C 1.53042 * 109.31297 * 305.36657 * 12 11 10 14 14 C 1.52996 * 109.46255 * 181.38636 * 13 12 11 15 15 H 1.09001 * 109.99964 * 186.30348 * 14 13 12 16 16 C 1.54311 * 109.77346 * 307.45830 * 14 13 12 17 17 C 1.55163 * 102.86319 * 141.88247 * 16 14 13 18 18 C 1.54904 * 101.58266 * 324.30682 * 17 16 14 19 19 N 1.47030 * 109.88228 * 65.20874 * 14 13 12 20 20 C 1.36930 * 125.64821 * 61.67636 * 19 14 13 21 21 H 1.08004 * 120.00182 * 14.65765 * 20 19 14 22 22 C 1.38817 * 119.99830 * 194.65263 * 20 19 14 23 23 N 1.31613 * 119.99899 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99825 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47340 * 90.00389 * 24 22 20 26 26 H 1.48506 * 109.46955 * 210.00048 * 24 22 20 27 27 H 1.48503 * 109.47115 * 329.99741 * 24 22 20 28 28 C 1.53042 * 109.53835 * 61.36080 * 13 12 11 29 29 C 1.46923 * 120.62874 * 3.86274 * 10 8 2 30 30 H 1.09004 * 109.46888 * 67.99900 * 1 2 3 31 31 H 1.08992 * 109.47580 * 188.00478 * 1 2 3 32 32 H 1.09002 * 109.46673 * 308.00773 * 1 2 3 33 33 H 1.09004 * 109.46829 * 54.99484 * 4 2 1 34 34 H 1.08991 * 109.47107 * 174.99772 * 4 2 1 35 35 H 0.97004 * 119.99884 * 359.97438 * 6 5 4 36 36 H 0.96994 * 120.00611 * 180.02562 * 6 5 4 37 37 H 1.09004 * 109.58542 * 113.79866 * 11 10 8 38 38 H 1.08999 * 109.58879 * 353.37332 * 11 10 8 39 39 H 1.08996 * 109.50108 * 185.41673 * 12 11 10 40 40 H 1.08998 * 109.50067 * 65.31261 * 12 11 10 41 41 H 1.09009 * 109.45857 * 301.35793 * 13 12 11 42 42 H 1.09002 * 110.92550 * 23.47231 * 16 14 13 43 43 H 1.08996 * 110.59312 * 260.14325 * 16 14 13 44 44 H 1.08997 * 111.00534 * 206.22721 * 17 16 14 45 45 H 1.09001 * 111.03294 * 82.39525 * 17 16 14 46 46 H 1.09003 * 110.36529 * 278.17134 * 18 17 16 47 47 H 1.08998 * 110.45945 * 155.89731 * 18 17 16 48 48 H 0.96998 * 119.99785 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.49326 * 58.59554 * 28 13 12 50 50 H 1.09001 * 109.49614 * 178.68408 * 28 13 12 51 51 H 1.08992 * 109.58705 * 246.19993 * 29 10 8 52 52 H 1.08998 * 109.58543 * 6.62956 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4766 6 7 1.9852 -0.3913 3.7002 7 8 1.0117 1.0875 2.3633 8 6 2.0323 -0.7105 -1.2304 9 8 2.5598 -1.7979 -1.1298 10 7 1.8953 -0.1374 -2.4426 11 6 2.3023 -0.8533 -3.6594 12 6 3.2681 0.0324 -4.4528 13 6 2.6121 1.3905 -4.7123 14 6 3.5602 2.2658 -5.5344 15 1 3.1508 3.2715 -5.6296 16 6 4.9429 2.3217 -4.8516 17 6 5.9233 2.2924 -6.0540 18 6 5.1828 1.3510 -7.0362 19 7 3.7549 1.6769 -6.8674 20 6 2.7736 1.4707 -7.7999 21 1 1.8137 1.9532 -7.6894 22 6 3.0126 0.6416 -8.8873 23 7 4.1823 0.0533 -9.0217 24 14 1.6741 0.3609 -10.1597 25 1 1.7869 1.3834 -11.2306 26 1 1.8284 -0.9931 -10.7500 27 1 0.3431 0.4690 -9.5101 28 6 2.3121 2.0774 -3.3780 29 6 1.3356 1.2148 -2.5724 30 1 -0.3633 0.3850 -0.9529 31 1 -0.3634 -1.0175 0.1431 32 1 -0.3633 0.6328 0.8098 33 1 1.6052 -1.7198 1.2952 34 1 3.1262 -0.7995 1.2056 35 1 2.4891 -1.2153 3.7909 36 1 1.7283 0.1094 4.4902 37 1 1.4235 -1.0711 -4.2664 38 1 2.8002 -1.7838 -3.3866 39 1 3.5026 -0.4459 -5.4037 40 1 4.1848 0.1746 -3.8806 41 1 1.6825 1.2456 -5.2629 42 1 5.0951 1.4547 -4.2088 43 1 5.0540 3.2468 -4.2859 44 1 6.8865 1.8737 -5.7626 45 1 6.0457 3.2869 -6.4832 46 1 5.3675 0.3090 -6.7749 47 1 5.4978 1.5458 -8.0613 48 1 4.3491 -0.5263 -9.7813 49 1 3.2380 2.2004 -2.8159 50 1 1.8664 3.0545 -3.5639 51 1 0.3781 1.1657 -3.0908 52 1 1.1957 1.6489 -1.5824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230582345.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:09 Heat of formation + Delta-G solvation = -84.469473 kcal Electronic energy + Delta-G solvation = -31037.280150 eV Core-core repulsion = 27035.685161 eV Total energy + Delta-G solvation = -4001.594989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.65933 -40.50365 -39.76894 -37.72485 -35.39231 -34.66867 -34.57876 -33.58755 -31.97199 -31.20520 -29.24148 -28.70008 -26.58844 -25.88951 -24.65917 -23.82988 -22.50223 -21.81765 -21.34637 -20.28389 -19.49694 -18.77353 -18.41671 -17.93442 -17.31887 -16.92871 -16.76687 -16.50861 -16.24973 -15.95346 -15.72752 -15.35415 -15.20084 -14.74770 -14.61086 -14.46867 -14.01275 -13.90560 -13.88687 -13.52564 -13.46158 -13.23835 -13.03368 -12.93921 -12.80665 -12.75613 -12.57748 -12.25326 -12.13683 -12.03535 -11.98885 -11.83385 -11.68273 -11.48470 -11.25222 -11.17273 -10.96654 -10.89660 -10.65890 -10.60210 -10.50205 -9.63108 -8.70301 -7.80967 -5.15231 1.46082 1.46484 1.54849 1.60497 1.67980 1.95222 2.52337 2.69988 3.37809 3.47270 3.67358 3.72227 3.90849 3.97153 3.97828 4.07594 4.17938 4.24165 4.25834 4.30862 4.34578 4.41341 4.42554 4.57980 4.68341 4.69361 4.73313 4.78270 4.83465 4.89756 4.93054 4.96827 5.05968 5.09292 5.12119 5.17658 5.23271 5.28409 5.29207 5.32830 5.54521 5.59476 5.67089 5.70890 5.73627 5.83503 5.97010 6.31367 6.44989 6.49644 7.14327 7.17202 7.39433 7.87243 8.55460 9.30671 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018872 B = 0.002738 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.293561 B =10222.272759 C =10736.327868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.110 0.890 4 C -0.122 4.122 5 C 0.521 3.479 6 N -0.839 5.839 7 O -0.578 6.578 8 C 0.517 3.483 9 O -0.584 6.584 10 N -0.602 5.602 11 C 0.119 3.881 12 C -0.104 4.104 13 C -0.084 4.084 14 C 0.158 3.842 15 H 0.033 0.967 16 C -0.118 4.118 17 C -0.139 4.139 18 C 0.180 3.820 19 N -0.610 5.610 20 C -0.222 4.222 21 H 0.075 0.925 22 C -0.063 4.063 23 N -0.948 5.948 24 Si 0.965 3.035 25 H -0.289 1.289 26 H -0.299 1.299 27 H -0.269 1.269 28 C -0.121 4.121 29 C 0.105 3.895 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.417 0.583 36 H 0.408 0.592 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.061 0.939 46 H -0.007 1.007 47 H 0.026 0.974 48 H 0.243 0.757 49 H 0.073 0.927 50 H 0.090 0.910 51 H 0.075 0.925 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.060 1.724 24.995 25.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.128 0.872 4 C -0.162 4.162 5 C 0.306 3.694 6 N -0.403 5.403 7 O -0.458 6.458 8 C 0.306 3.694 9 O -0.464 6.464 10 N -0.334 5.334 11 C -0.004 4.004 12 C -0.142 4.142 13 C -0.104 4.104 14 C 0.052 3.948 15 H 0.051 0.949 16 C -0.155 4.155 17 C -0.177 4.177 18 C 0.055 3.945 19 N -0.334 5.334 20 C -0.351 4.351 21 H 0.093 0.907 22 C -0.256 4.256 23 N -0.597 5.597 24 Si 0.795 3.205 25 H -0.217 1.217 26 H -0.226 1.226 27 H -0.194 1.194 28 C -0.159 4.159 29 C -0.017 4.017 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.248 0.752 36 H 0.240 0.760 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.011 0.989 47 H 0.045 0.955 48 H 0.053 0.947 49 H 0.091 0.909 50 H 0.109 0.891 51 H 0.094 0.906 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.215 1.671 24.591 25.006 hybrid contribution -0.246 -0.872 -1.281 1.569 sum -4.461 0.800 23.311 23.747 Atomic orbital electron populations 1.21893 0.91542 1.02844 1.03868 1.20984 0.98765 1.00831 0.90319 0.87180 1.21447 1.04054 1.00257 0.90430 1.20640 0.77915 0.84740 0.86065 1.43734 1.59164 1.29948 1.07468 1.90708 1.41673 1.26153 1.87316 1.21089 0.77706 0.85494 0.85079 1.90652 1.45843 1.23220 1.86717 1.48173 1.62026 1.17564 1.05607 1.21444 0.98155 0.95543 0.85222 1.21694 0.97817 0.96221 0.98512 1.21404 0.98486 0.94866 0.95675 1.21187 0.94784 0.94376 0.84476 0.94882 1.22686 0.93640 1.02440 0.96764 1.22883 0.98287 0.99645 0.96904 1.21133 0.83632 0.93660 0.96102 1.44708 1.03929 1.72575 1.12147 1.19222 0.94064 1.20701 1.01162 0.90684 1.25579 0.99004 0.99240 1.01782 1.70142 1.23003 1.35426 1.31175 0.85269 0.79514 0.76368 0.79379 1.21656 1.22632 1.19396 1.21937 1.00155 0.99087 0.94763 1.22049 0.96681 0.80451 1.02497 0.91459 0.92605 0.89820 0.87392 0.87626 0.75244 0.76045 0.92129 0.90860 0.93780 0.91894 0.93421 0.90850 0.89373 0.90625 0.91982 0.98938 0.95533 0.94729 0.90854 0.89115 0.90630 0.87097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.48 71.98 0.61 -1.91 16 2 C -0.09 -1.64 1.52 -11.54 -0.02 -1.66 16 3 H 0.11 1.95 6.73 -2.39 -0.02 1.94 16 4 C -0.12 -1.87 4.47 29.85 0.13 -1.74 16 5 C 0.52 7.91 7.85 87.65 0.69 8.60 16 6 N -0.84 -6.26 8.87 -173.53 -1.54 -7.80 16 7 O -0.58 -12.93 14.83 -3.05 -0.05 -12.98 16 8 C 0.52 13.24 6.95 87.65 0.61 13.85 16 9 O -0.58 -18.84 15.46 -3.04 -0.05 -18.88 16 10 N -0.60 -15.52 2.97 -818.94 -2.43 -17.95 16 11 C 0.12 3.77 6.44 86.36 0.56 4.33 16 12 C -0.10 -3.67 4.86 30.67 0.15 -3.52 16 13 C -0.08 -2.76 1.96 -10.77 -0.02 -2.78 16 14 C 0.16 5.93 2.88 45.33 0.13 6.06 16 15 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 16 C -0.12 -3.73 5.42 31.78 0.17 -3.56 16 17 C -0.14 -5.05 7.08 31.99 0.23 -4.82 16 18 C 0.18 8.81 5.41 86.85 0.47 9.28 16 19 N -0.61 -29.82 2.59 -668.28 -1.73 -31.55 16 20 C -0.22 -12.04 9.71 84.04 0.82 -11.22 16 21 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 22 C -0.06 -3.55 5.47 84.86 0.46 -3.09 16 23 N -0.95 -57.12 10.59 21.65 0.23 -56.89 16 24 Si 0.97 45.91 29.55 68.60 2.03 47.93 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 28 C -0.12 -2.79 5.19 30.67 0.16 -2.63 16 29 C 0.11 2.16 5.08 86.36 0.44 2.59 16 30 H 0.07 1.11 6.45 -2.38 -0.02 1.10 16 31 H 0.05 0.97 8.12 -2.39 -0.02 0.95 16 32 H 0.08 1.56 6.14 -2.39 -0.01 1.54 16 33 H 0.11 1.56 8.11 -2.39 -0.02 1.54 16 34 H 0.11 1.54 8.11 -2.39 -0.02 1.52 16 35 H 0.42 0.87 8.83 -92.71 -0.82 0.05 16 36 H 0.41 2.31 8.93 -92.71 -0.83 1.49 16 37 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.07 2.50 7.00 -2.39 -0.02 2.49 16 39 H 0.04 1.97 7.74 -2.39 -0.02 1.95 16 40 H 0.06 2.14 5.84 -2.39 -0.01 2.13 16 41 H 0.05 1.80 7.84 -2.38 -0.02 1.78 16 42 H 0.07 2.29 5.33 -2.39 -0.01 2.28 16 43 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 46 H -0.01 -0.40 8.05 -2.39 -0.02 -0.42 16 47 H 0.03 1.48 6.95 -2.39 -0.02 1.47 16 48 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 49 H 0.07 1.61 7.53 -2.39 -0.02 1.59 16 50 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 52 H 0.11 1.75 5.16 -2.39 -0.01 1.73 16 Total: -1.00 -73.85 390.93 1.34 -72.51 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -0.71 Total: 17.84 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 5.58 Total: 7.78 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -5.48 Total: -114.20 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.09 Total: -31.86 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -73.85 1.34 -72.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230582345.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.958 kcal (2) G-P(sol) polarization free energy of solvation -73.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds