Wall clock time and date at job start Tue Mar 31 2020 20:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50696 * 120.00137 * 2 1 4 4 C 1.32992 * 119.99973 * 180.02562 * 2 1 3 5 5 C 1.47104 * 120.00026 * 359.97438 * 4 2 1 6 6 O 1.21615 * 119.99885 * 5.87439 * 5 4 2 7 7 N 1.34782 * 120.00253 * 185.87518 * 5 4 2 8 8 C 1.46929 * 120.62598 * 5.70045 * 7 5 4 9 9 C 1.53193 * 108.77298 * 126.41535 * 8 7 5 10 10 C 1.53034 * 109.31303 * 54.63268 * 9 8 7 11 11 C 1.53079 * 109.65980 * 298.69606 * 10 9 8 12 12 C 1.46917 * 120.63050 * 185.72231 * 7 5 4 13 13 H 1.09007 * 109.58729 * 113.65930 * 12 7 5 14 14 C 1.52998 * 109.59290 * 353.37582 * 12 7 5 15 15 H 1.09007 * 109.46792 * 53.29733 * 14 12 7 16 16 C 1.53004 * 109.47121 * 293.30419 * 14 12 7 17 17 N 1.46893 * 109.47388 * 173.30185 * 14 12 7 18 18 C 1.46909 * 110.99804 * 207.10873 * 17 14 12 19 19 C 1.50698 * 109.46834 * 175.79403 * 18 17 14 20 20 O 1.21291 * 120.00449 * 0.02562 * 19 18 17 21 21 N 1.34785 * 119.99622 * 179.72765 * 19 18 17 22 22 C 1.37096 * 119.99647 * 180.27983 * 21 19 18 23 23 H 1.08001 * 120.00157 * 359.97438 * 22 21 19 24 24 C 1.38945 * 119.99714 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00463 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00209 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46921 * 59.99761 * 26 24 22 28 28 H 1.48493 * 109.47522 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47037 * 299.99876 * 26 24 22 30 30 H 1.08997 * 109.46775 * 239.99610 * 1 2 3 31 31 H 1.09001 * 109.46719 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.46987 * 119.99549 * 1 2 3 33 33 H 1.08993 * 109.47615 * 270.00555 * 3 2 1 34 34 H 1.09002 * 109.46866 * 30.00517 * 3 2 1 35 35 H 1.09005 * 109.47140 * 149.99784 * 3 2 1 36 36 H 1.07993 * 120.00259 * 179.97438 * 4 2 1 37 37 H 1.08995 * 109.58526 * 246.19777 * 8 7 5 38 38 H 1.09003 * 109.58679 * 6.63009 * 8 7 5 39 39 H 1.09002 * 109.49786 * 174.58463 * 9 8 7 40 40 H 1.09005 * 109.49452 * 294.68275 * 9 8 7 41 41 H 1.09003 * 109.46330 * 58.65543 * 10 9 8 42 42 H 1.09003 * 109.46453 * 178.61777 * 10 9 8 43 43 H 1.08995 * 109.39465 * 301.27925 * 11 10 9 44 44 H 1.09000 * 109.62159 * 181.16963 * 11 10 9 45 45 H 1.09001 * 109.46558 * 285.51440 * 16 14 12 46 46 H 1.09003 * 109.47178 * 45.50333 * 16 14 12 47 47 H 1.08993 * 109.47431 * 165.50815 * 16 14 12 48 48 H 1.00900 * 111.00389 * 331.05883 * 17 14 12 49 49 H 1.08996 * 109.47255 * 55.79533 * 18 17 14 50 50 H 1.08997 * 109.47098 * 295.79602 * 18 17 14 51 51 H 0.97001 * 120.00228 * 0.26624 * 21 19 18 52 52 H 0.96994 * 120.00889 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2251 -2.4284 -0.1078 7 7 2.1051 -3.5899 0.1184 8 6 3.5520 -3.5995 0.3736 9 6 3.8292 -4.4626 1.6084 10 6 3.2179 -5.8505 1.4035 11 6 1.7019 -5.7253 1.2322 12 6 1.4010 -4.8735 -0.0050 13 1 1.7440 -5.3939 -0.8992 14 6 -0.1055 -4.6249 -0.1024 15 1 -0.3055 -3.9151 -0.9052 16 6 -0.6149 -4.0533 1.2223 17 7 -0.7935 -5.8915 -0.3859 18 6 -2.0557 -5.6566 -1.0999 19 6 -2.6806 -6.9788 -1.4637 20 8 -2.1290 -8.0149 -1.1579 21 7 -3.8554 -7.0101 -2.1236 22 6 -4.4267 -8.2130 -2.4495 23 1 -3.9352 -9.1355 -2.1778 24 6 -5.6380 -8.2452 -3.1294 25 7 -6.2364 -7.1228 -3.4596 26 14 -6.4162 -9.8842 -3.5741 27 1 -6.6793 -10.6595 -2.3352 28 1 -7.6953 -9.6468 -4.2899 29 1 -5.4927 -10.6491 -4.4501 30 1 -0.3633 -0.5139 0.8899 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5137 -0.8900 33 1 2.4422 1.6198 -1.0276 34 1 1.6715 2.0647 0.5139 35 1 3.2130 1.1747 0.5139 36 1 3.2519 -1.1518 -0.0009 37 1 4.0722 -4.0171 -0.4884 38 1 3.8980 -2.5816 0.5540 39 1 4.9056 -4.5568 1.7523 40 1 3.3838 -3.9949 2.4866 41 1 3.6457 -6.3076 0.5111 42 1 3.4349 -6.4746 2.2704 43 1 1.2761 -5.2482 2.1148 44 1 1.2647 -6.7159 1.1070 45 1 -0.6538 -4.8463 1.9691 46 1 0.0595 -3.2672 1.5620 47 1 -1.6129 -3.6392 1.0795 48 1 -0.1967 -6.5192 -0.9036 49 1 -1.8591 -5.0858 -2.0074 50 1 -2.7369 -5.0968 -0.4591 51 1 -4.2967 -6.1815 -2.3678 52 1 -7.0818 -7.1452 -3.9345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265079040.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:22 Heat of formation + Delta-G solvation = -50.235498 kcal Electronic energy + Delta-G solvation = -30546.210035 eV Core-core repulsion = 26546.099543 eV Total energy + Delta-G solvation = -4000.110493 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.99097 -40.17276 -38.77618 -37.29433 -36.25083 -35.87125 -33.87634 -33.35093 -32.77867 -30.00067 -28.96335 -28.58800 -28.18581 -26.47921 -25.55636 -24.66904 -22.41229 -21.80023 -21.12160 -20.26183 -19.92069 -18.86418 -18.46389 -17.46388 -16.91614 -16.74274 -16.47141 -16.45547 -16.09154 -15.62529 -15.47225 -15.35197 -15.20278 -15.00341 -14.71796 -14.34915 -14.21815 -14.18782 -13.93834 -13.50913 -13.42559 -13.31098 -13.21503 -13.13399 -12.95484 -12.85515 -12.61166 -12.48236 -12.43890 -12.30056 -12.13228 -12.01584 -11.86351 -11.65703 -11.53582 -11.52120 -11.30564 -10.38100 -10.09896 -10.03608 -9.97340 -9.45067 -9.09287 -8.47974 -5.97721 0.48836 1.38734 1.40023 1.51955 1.99774 2.02422 2.28553 2.36397 2.95983 3.18477 3.50775 3.57328 3.82748 3.85760 3.94349 3.99430 4.10126 4.22297 4.25735 4.28783 4.31196 4.41474 4.53649 4.57360 4.61979 4.66272 4.72251 4.73570 4.78781 4.85308 4.92643 4.94297 4.99148 5.02932 5.07384 5.13100 5.14210 5.23370 5.26014 5.27362 5.38522 5.39981 5.50496 5.59846 5.62917 5.72795 5.91540 6.12681 6.43506 6.56483 6.58119 7.09210 7.33944 7.52137 8.06729 8.69525 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.002551 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.665156 B =10974.997989 C =12495.485629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.031 4.031 3 C -0.123 4.123 4 C -0.246 4.246 5 C 0.523 3.477 6 O -0.550 6.550 7 N -0.603 5.603 8 C 0.103 3.897 9 C -0.128 4.128 10 C -0.119 4.119 11 C -0.123 4.123 12 C 0.152 3.848 13 H 0.066 0.934 14 C 0.092 3.908 15 H 0.067 0.933 16 C -0.092 4.092 17 N -0.675 5.675 18 C 0.074 3.926 19 C 0.440 3.560 20 O -0.620 6.620 21 N -0.573 5.573 22 C -0.335 4.335 23 H 0.081 0.919 24 C -0.015 4.015 25 N -0.922 5.922 26 Si 0.997 3.003 27 H -0.271 1.271 28 H -0.269 1.269 29 H -0.270 1.270 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.154 0.846 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.032 0.968 46 H 0.063 0.937 47 H 0.028 0.972 48 H 0.340 0.660 49 H 0.054 0.946 50 H 0.090 0.910 51 H 0.395 0.605 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.093 17.888 8.442 31.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.033 4.033 3 C -0.179 4.179 4 C -0.266 4.266 5 C 0.317 3.683 6 O -0.431 6.431 7 N -0.336 5.336 8 C -0.018 4.018 9 C -0.166 4.166 10 C -0.157 4.157 11 C -0.161 4.161 12 C 0.048 3.952 13 H 0.084 0.916 14 C -0.016 4.016 15 H 0.084 0.916 16 C -0.150 4.150 17 N -0.310 5.310 18 C -0.059 4.059 19 C 0.228 3.772 20 O -0.506 6.506 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.099 0.901 24 C -0.214 4.214 25 N -0.563 5.563 26 Si 0.820 3.180 27 H -0.196 1.196 28 H -0.194 1.194 29 H -0.195 1.195 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.171 0.829 37 H 0.096 0.904 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.051 0.949 46 H 0.082 0.918 47 H 0.047 0.953 48 H 0.159 0.841 49 H 0.072 0.928 50 H 0.108 0.892 51 H 0.229 0.771 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 23.372 17.217 9.106 30.424 hybrid contribution -0.832 -0.434 -1.299 1.602 sum 22.540 16.783 7.807 29.167 Atomic orbital electron populations 1.20979 0.92209 1.01466 1.02581 1.22831 0.96216 0.95856 0.88431 1.21061 1.00376 0.92701 1.03785 1.22580 1.01112 0.90693 1.12251 1.19072 0.87182 0.85107 0.76929 1.90874 1.15033 1.87003 1.50211 1.48029 1.09920 1.04423 1.71245 1.22066 0.78445 1.02848 0.98473 1.21895 1.02303 0.94866 0.97556 1.21551 0.93767 0.97861 1.02510 1.21904 0.97500 0.99599 0.97146 1.21267 0.90951 0.84490 0.98510 0.91578 1.22146 0.91502 0.88338 0.99601 0.91583 1.21663 0.99737 0.98174 0.95389 1.60258 1.05501 1.14355 1.50899 1.21442 0.93555 0.93288 0.97588 1.20734 0.82745 0.91611 0.82143 1.90466 1.64637 1.36360 1.59148 1.41941 1.19455 1.08956 1.50603 1.19669 1.04508 0.86624 1.35672 0.90109 1.26120 0.96502 1.02526 0.96300 1.69681 1.18368 1.28008 1.40232 0.84938 0.77523 0.77014 0.78540 1.19637 1.19387 1.19469 0.91948 0.91449 0.91840 0.89390 0.90276 0.89566 0.82892 0.90388 0.87220 0.88226 0.92099 0.91474 0.91078 0.92059 0.91714 0.94893 0.91824 0.95313 0.84128 0.92797 0.89165 0.77142 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.33 71.24 0.59 -1.64 16 2 C -0.03 -0.47 6.11 -17.62 -0.11 -0.57 16 3 C -0.12 -0.94 9.98 71.23 0.71 -0.23 16 4 C -0.25 -3.80 8.83 23.43 0.21 -3.59 16 5 C 0.52 11.68 6.47 86.57 0.56 12.24 16 6 O -0.55 -15.73 6.54 -4.08 -0.03 -15.75 16 7 N -0.60 -11.86 2.88 -799.25 -2.30 -14.16 16 8 C 0.10 1.19 6.30 86.36 0.54 1.73 16 9 C -0.13 -1.42 6.08 30.67 0.19 -1.23 16 10 C -0.12 -1.86 5.88 30.63 0.18 -1.68 16 11 C -0.12 -2.80 4.89 30.69 0.15 -2.65 16 12 C 0.15 3.72 2.57 44.98 0.12 3.84 16 13 H 0.07 1.64 7.98 -2.38 -0.02 1.62 16 14 C 0.09 2.87 1.87 44.92 0.08 2.95 16 15 H 0.07 2.30 5.46 -8.52 -0.05 2.25 16 16 C -0.09 -2.89 6.82 71.98 0.49 -2.40 16 17 N -0.68 -24.95 5.68 -495.57 -2.82 -27.77 16 18 C 0.07 3.02 6.02 85.55 0.52 3.54 16 19 C 0.44 22.76 7.81 87.66 0.68 23.45 16 20 O -0.62 -36.14 15.68 -3.06 -0.05 -36.18 16 21 N -0.57 -31.50 5.29 -306.98 -1.62 -33.12 16 22 C -0.34 -19.90 9.68 84.04 0.81 -19.09 16 23 H 0.08 5.05 7.16 -2.91 -0.02 5.03 16 24 C -0.01 -0.83 5.50 84.92 0.47 -0.36 16 25 N -0.92 -51.88 13.05 21.66 0.28 -51.60 16 26 Si 1.00 44.30 29.55 68.60 2.03 46.33 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 29 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 30 H 0.06 1.43 7.39 -2.39 -0.02 1.41 16 31 H 0.07 1.01 7.94 -2.39 -0.02 0.99 16 32 H 0.06 1.53 7.06 -2.39 -0.02 1.52 16 33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 0.52 8.05 -2.39 -0.02 0.50 16 35 H 0.09 0.40 8.07 -2.38 -0.02 0.38 16 36 H 0.15 1.37 6.09 -2.91 -0.02 1.35 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.11 0.76 5.46 -2.39 -0.01 0.75 16 39 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.51 6.35 -2.39 -0.02 1.50 16 44 H 0.06 1.74 7.98 -2.39 -0.02 1.72 16 45 H 0.03 1.06 7.13 -2.39 -0.02 1.05 16 46 H 0.06 1.89 5.43 -2.39 -0.01 1.87 16 47 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.34 12.81 7.76 -89.69 -0.70 12.12 16 49 H 0.05 2.06 7.95 -2.39 -0.02 2.04 16 50 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 51 H 0.39 20.91 7.90 -92.71 -0.73 20.17 16 52 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -72.57 397.74 1.17 -71.41 By element: Atomic # 1 Polarization: 47.07 SS G_CDS: -0.53 Total: 46.54 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.20 Total: 14.31 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -6.46 Total: -126.65 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -0.07 Total: -51.94 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -72.57 1.17 -71.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265079040.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.172 kcal (2) G-P(sol) polarization free energy of solvation -72.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds