Wall clock time and date at job start Tue Mar 31 2020 20:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50698 * 119.99905 * 2 1 4 4 C 1.32988 * 120.00229 * 180.02562 * 2 1 3 5 5 C 1.47100 * 120.00337 * 179.97438 * 4 2 1 6 6 O 1.21619 * 119.99951 * 354.90306 * 5 4 2 7 7 N 1.34776 * 119.99887 * 174.90015 * 5 4 2 8 8 C 1.46918 * 120.63382 * 6.24116 * 7 5 4 9 9 C 1.53187 * 108.78161 * 233.58831 * 8 7 5 10 10 C 1.53051 * 109.31149 * 305.36667 * 9 8 7 11 11 C 1.53041 * 109.53604 * 61.36201 * 10 9 8 12 12 C 1.46928 * 120.62729 * 185.96711 * 7 5 4 13 13 H 1.09002 * 109.58459 * 246.19842 * 12 7 5 14 14 C 1.52996 * 109.58839 * 6.62413 * 12 7 5 15 15 H 1.08997 * 109.47555 * 305.15406 * 14 12 7 16 16 C 1.53000 * 109.47331 * 65.15500 * 14 12 7 17 17 N 1.46903 * 109.47312 * 185.15606 * 14 12 7 18 18 C 1.46899 * 110.99976 * 159.87609 * 17 14 12 19 19 C 1.50703 * 109.46818 * 184.96937 * 18 17 14 20 20 O 1.21294 * 120.00034 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99872 * 179.97438 * 19 18 17 22 22 C 1.37100 * 120.00092 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99959 * 359.97438 * 22 21 19 24 24 C 1.38952 * 120.00159 * 180.02562 * 22 21 19 25 25 N 1.31414 * 119.99800 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99896 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47311 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47153 * 119.99849 * 26 24 22 29 29 H 1.48501 * 109.46932 * 239.99400 * 26 24 22 30 30 H 1.08991 * 109.46996 * 89.99764 * 1 2 3 31 31 H 1.09005 * 109.46849 * 329.99500 * 1 2 3 32 32 H 1.08991 * 109.46972 * 210.00328 * 1 2 3 33 33 H 1.09007 * 109.47355 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47371 * 119.99956 * 3 2 1 35 35 H 1.09002 * 109.47383 * 240.00284 * 3 2 1 36 36 H 1.08002 * 119.99765 * 359.97438 * 4 2 1 37 37 H 1.09002 * 109.58668 * 353.37795 * 8 7 5 38 38 H 1.09001 * 109.58387 * 113.65672 * 8 7 5 39 39 H 1.09003 * 109.49762 * 65.31411 * 9 8 7 40 40 H 1.08998 * 109.50047 * 185.41728 * 9 8 7 41 41 H 1.08994 * 109.45588 * 181.38167 * 10 9 8 42 42 H 1.08998 * 109.45915 * 301.35463 * 10 9 8 43 43 H 1.09003 * 109.49957 * 58.58660 * 11 10 9 44 44 H 1.08997 * 109.49315 * 178.68497 * 11 10 9 45 45 H 1.08999 * 109.47365 * 176.26581 * 16 14 12 46 46 H 1.08998 * 109.47128 * 296.26922 * 16 14 12 47 47 H 1.09007 * 109.47333 * 56.26132 * 16 14 12 48 48 H 1.00891 * 111.00043 * 35.91775 * 17 14 12 49 49 H 1.09005 * 109.47018 * 304.96353 * 18 17 14 50 50 H 1.08996 * 109.47841 * 64.96249 * 18 17 14 51 51 H 0.97002 * 120.00004 * 359.97438 * 21 19 18 52 52 H 0.97006 * 119.99670 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 3.6430 -1.1517 -0.0011 6 8 4.2511 -0.1026 -0.0947 7 7 4.3169 -2.3143 0.1021 8 6 3.6029 -3.5981 0.0787 9 6 4.0018 -4.4070 1.3170 10 6 5.5259 -4.5363 1.3677 11 6 6.1543 -3.1451 1.4764 12 6 5.7802 -2.3222 0.2342 13 1 6.2248 -2.7725 -0.6533 14 6 6.2885 -0.8880 0.3946 15 1 5.9293 -0.2802 -0.4358 16 6 5.7710 -0.3079 1.7124 17 7 7.7575 -0.8871 0.4025 18 6 8.2848 0.4448 0.0771 19 6 9.7869 0.3791 -0.0252 20 8 10.3616 -0.6736 0.1558 21 7 10.4917 1.4900 -0.3177 22 6 11.8582 1.4304 -0.4101 23 1 12.3701 0.4932 -0.2482 24 6 12.5849 2.5759 -0.7112 25 7 11.9621 3.7163 -0.9078 26 14 14.4469 2.4947 -0.8365 27 1 14.9007 1.1055 -0.5730 28 1 14.8696 2.9038 -2.1999 29 1 15.0507 3.4105 0.1645 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 0.8900 0.5139 32 1 -0.3633 -0.8899 0.5138 33 1 1.5522 2.1337 0.0005 34 1 2.8872 1.3629 0.8900 35 1 2.8872 1.3629 -0.8900 36 1 1.6320 -2.0870 -0.0005 37 1 2.5278 -3.4186 0.0903 38 1 3.8716 -4.1492 -0.8225 39 1 3.6500 -3.8968 2.2137 40 1 3.5541 -5.3993 1.2631 41 1 5.8111 -5.1324 2.2345 42 1 5.8794 -5.0243 0.4593 43 1 5.7822 -2.6468 2.3715 44 1 7.2386 -3.2394 1.5359 45 1 6.1865 0.6892 1.8585 46 1 4.6832 -0.2470 1.6802 47 1 6.0745 -0.9525 2.5373 48 1 8.1229 -1.5847 -0.2281 49 1 7.8701 0.7772 -0.8747 50 1 8.0043 1.1483 0.8610 51 1 10.0320 2.3318 -0.4628 52 1 12.4694 4.5159 -1.1183 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265079043.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:32 Heat of formation + Delta-G solvation = -26.745498 kcal Electronic energy + Delta-G solvation = -30556.022930 eV Core-core repulsion = 26556.931040 eV Total energy + Delta-G solvation = -3999.091890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08031 -38.26252 -37.84983 -36.16868 -35.33497 -33.81442 -33.04733 -31.72064 -31.07244 -28.85633 -28.33083 -27.91906 -26.55705 -25.26088 -24.22636 -23.51867 -21.58756 -20.76124 -19.42374 -19.10026 -18.19581 -17.79802 -17.32914 -15.99726 -15.86856 -15.55769 -15.09560 -14.98419 -14.73508 -14.50608 -14.40244 -14.27959 -14.14182 -13.82262 -13.63666 -13.50938 -13.20518 -12.94967 -12.65268 -12.47743 -12.43891 -12.26930 -11.98326 -11.81840 -11.75903 -11.68589 -11.46001 -11.34100 -11.06500 -11.01234 -10.89900 -10.80090 -10.58533 -10.35349 -10.29148 -10.14954 -9.44674 -9.29670 -9.13343 -8.58047 -8.27024 -7.88916 -7.64441 -6.34303 -3.74776 1.18051 2.83798 3.16411 3.21205 3.30961 3.38628 4.01748 4.18903 4.28240 4.42515 4.55223 4.62946 4.69257 4.70438 4.82171 4.90839 5.10095 5.12733 5.15618 5.16767 5.28571 5.30452 5.34492 5.37435 5.42627 5.50716 5.56575 5.70792 5.71602 5.72976 5.81896 5.89259 5.94706 6.00566 6.06246 6.08519 6.16356 6.22001 6.26548 6.30877 6.35728 6.41284 6.43387 6.63183 6.74778 7.34322 7.52628 7.62243 7.90716 8.15252 8.19947 8.70067 9.25668 9.63697 10.15432 10.83730 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.002541 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.652912 B =11015.702075 C =12545.649154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.032 4.032 3 C -0.119 4.119 4 C -0.242 4.242 5 C 0.540 3.460 6 O -0.517 6.517 7 N -0.604 5.604 8 C 0.108 3.892 9 C -0.135 4.135 10 C -0.122 4.122 11 C -0.129 4.129 12 C 0.151 3.849 13 H 0.068 0.932 14 C 0.075 3.925 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.670 5.670 18 C 0.058 3.942 19 C 0.443 3.557 20 O -0.586 6.586 21 N -0.566 5.566 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.020 3.980 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.047 0.953 46 H 0.063 0.937 47 H 0.046 0.954 48 H 0.343 0.657 49 H 0.041 0.959 50 H 0.084 0.916 51 H 0.392 0.608 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.415 -11.890 2.171 29.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.034 4.034 3 C -0.175 4.175 4 C -0.263 4.263 5 C 0.333 3.667 6 O -0.397 6.397 7 N -0.337 5.337 8 C -0.015 4.015 9 C -0.173 4.173 10 C -0.160 4.160 11 C -0.167 4.167 12 C 0.048 3.952 13 H 0.086 0.914 14 C -0.033 4.033 15 H 0.109 0.891 16 C -0.188 4.188 17 N -0.305 5.305 18 C -0.075 4.075 19 C 0.228 3.772 20 O -0.470 6.470 21 N -0.203 5.203 22 C -0.426 4.426 23 H 0.121 0.879 24 C -0.181 4.181 25 N -0.544 5.544 26 Si 0.756 3.244 27 H -0.193 1.193 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.142 0.858 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.163 0.837 49 H 0.059 0.941 50 H 0.102 0.898 51 H 0.226 0.774 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.575 -11.777 2.874 28.302 hybrid contribution 0.452 0.376 -1.071 1.221 sum -25.123 -11.400 1.803 27.648 Atomic orbital electron populations 1.21022 0.91321 1.03176 1.02838 1.22596 0.95787 0.95624 0.89391 1.21086 0.99214 0.92526 1.04648 1.22508 0.93523 0.98628 1.11648 1.18453 0.87920 0.83292 0.77078 1.90800 1.68427 1.31691 1.48744 1.47943 1.07055 1.05761 1.72958 1.21790 0.97104 0.84214 0.98432 1.21925 0.97134 0.99961 0.98273 1.21564 0.94601 0.97686 1.02141 1.22084 1.02210 0.94313 0.98061 1.21471 0.78519 0.97246 0.97934 0.91413 1.22301 0.86779 0.93593 1.00658 0.89142 1.22079 1.00548 1.00243 0.95918 1.60152 1.06039 1.05815 1.58515 1.21613 0.94158 0.91971 0.99746 1.19921 0.88310 0.85069 0.83857 1.90502 1.71340 1.29878 1.55302 1.41880 1.07310 1.09487 1.61578 1.19749 0.81526 0.96878 1.44476 0.87936 1.25262 1.00610 0.94784 0.97452 1.69634 1.36483 0.99769 1.48530 0.85807 0.82397 0.78497 0.77677 1.19260 1.20831 1.20792 0.90369 0.90953 0.91290 0.93082 0.89912 0.89483 0.85795 0.89593 0.91480 0.91478 0.91009 0.91690 0.91952 0.90868 0.89470 0.93358 0.91805 0.93529 0.83750 0.94084 0.89802 0.77449 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.67 9.98 36.01 0.36 -0.31 16 2 C -0.03 -0.26 6.11 -101.17 -0.62 -0.88 16 3 C -0.12 -1.14 8.33 36.00 0.30 -0.84 16 4 C -0.24 -2.12 8.96 -37.81 -0.34 -2.45 16 5 C 0.54 6.20 6.19 -12.67 -0.08 6.12 16 6 O -0.52 -7.22 6.90 5.26 0.04 -7.19 16 7 N -0.60 -6.29 2.93 -166.36 -0.49 -6.78 16 8 C 0.11 0.78 6.35 -3.72 -0.02 0.76 16 9 C -0.13 -0.93 6.08 -26.61 -0.16 -1.09 16 10 C -0.12 -1.05 5.88 -26.68 -0.16 -1.21 16 11 C -0.13 -1.46 4.88 -26.39 -0.13 -1.59 16 12 C 0.15 1.86 2.65 -67.38 -0.18 1.68 16 13 H 0.07 0.85 8.03 -51.93 -0.42 0.43 16 14 C 0.08 1.13 1.85 -67.71 -0.13 1.01 16 15 H 0.09 1.52 5.30 -53.42 -0.28 1.24 16 16 C -0.13 -1.95 8.04 37.16 0.30 -1.65 16 17 N -0.67 -11.94 5.64 -107.99 -0.61 -12.55 16 18 C 0.06 1.15 5.99 -4.98 -0.03 1.12 16 19 C 0.44 11.08 7.81 -10.98 -0.09 10.99 16 20 O -0.59 -16.50 15.67 5.55 0.09 -16.41 16 21 N -0.57 -15.10 5.29 -10.96 -0.06 -15.16 16 22 C -0.30 -8.58 9.68 -14.93 -0.14 -8.72 16 23 H 0.10 3.10 7.16 -52.48 -0.38 2.73 16 24 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 25 N -0.90 -25.43 13.05 55.50 0.72 -24.70 16 26 Si 0.93 21.68 29.55 -169.99 -5.02 16.66 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.34 8.05 -51.93 -0.42 -0.08 16 32 H 0.07 0.30 8.07 -51.93 -0.42 -0.12 16 33 H 0.05 0.40 7.94 -51.92 -0.41 -0.02 16 34 H 0.08 0.92 7.37 -51.93 -0.38 0.54 16 35 H 0.09 0.99 7.08 -51.93 -0.37 0.62 16 36 H 0.12 0.79 5.86 -52.49 -0.31 0.48 16 37 H 0.09 0.47 5.30 -51.93 -0.28 0.19 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.89 5.98 -51.93 -0.31 0.58 16 44 H 0.09 1.15 7.96 -51.93 -0.41 0.73 16 45 H 0.05 0.78 7.15 -51.93 -0.37 0.41 16 46 H 0.06 0.91 4.95 -51.93 -0.26 0.66 16 47 H 0.05 0.69 6.01 -51.93 -0.31 0.38 16 48 H 0.34 6.28 7.86 -39.30 -0.31 5.97 16 49 H 0.04 0.77 7.95 -51.93 -0.41 0.36 16 50 H 0.08 1.61 7.21 -51.93 -0.37 1.24 16 51 H 0.39 10.10 7.90 -40.82 -0.32 9.78 16 52 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 394.92 15.07 5.95 5.95 Total: -1.00 -32.64 394.92 -9.00 -41.64 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -8.41 Total: 15.16 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.21 Total: 3.38 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.43 Total: -59.19 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.12 Total: -23.60 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.64 -9.00 -41.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265079043.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.897 kcal (2) G-P(sol) polarization free energy of solvation -32.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds