Wall clock time and date at job start Tue Mar 31 2020 20:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47103 * 2 1 4 4 N 1.46499 * 109.46910 * 119.99693 * 2 1 3 5 5 C 1.34779 * 120.00363 * 275.00000 * 4 2 1 6 6 O 1.21287 * 119.99512 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00145 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.46996 * 179.97438 * 7 5 4 9 9 N 1.46499 * 109.47214 * 179.97438 * 8 7 5 10 10 C 1.46763 * 124.34978 * 269.72920 * 9 8 7 11 11 C 1.54660 * 105.38135 * 162.85434 * 10 9 8 12 12 C 1.54629 * 101.68581 * 25.76399 * 11 10 9 13 13 C 1.34422 * 124.34588 * 90.02678 * 9 8 7 14 14 O 1.21279 * 124.94194 * 0.42977 * 13 9 8 15 15 C 1.53003 * 109.47070 * 239.99670 * 2 1 3 16 16 H 1.08996 * 109.49653 * 185.06582 * 15 2 1 17 17 C 1.53039 * 109.49674 * 64.99941 * 15 2 1 18 18 C 1.53039 * 109.53805 * 178.67946 * 17 15 2 19 19 C 1.53191 * 109.31012 * 61.36872 * 18 17 15 20 20 N 1.46935 * 108.77538 * 305.36436 * 19 18 17 21 21 C 1.36929 * 120.63125 * 233.58570 * 20 19 18 22 22 H 1.08000 * 120.00028 * 151.82618 * 21 20 19 23 23 C 1.38812 * 120.00125 * 331.83340 * 21 20 19 24 24 N 1.31624 * 119.99845 * 343.08396 * 23 21 20 25 25 Si 1.86797 * 120.00301 * 163.08421 * 23 21 20 26 26 H 1.48506 * 109.47307 * 59.99856 * 25 23 21 27 27 H 1.48505 * 109.47406 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47360 * 299.99911 * 25 23 21 29 29 C 1.46928 * 118.73810 * 53.60614 * 20 19 18 30 30 H 1.09003 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47052 * 299.99889 * 1 2 3 32 32 H 1.08996 * 109.47109 * 60.00044 * 1 2 3 33 33 H 0.97003 * 120.00343 * 95.00440 * 4 2 1 34 34 H 1.08997 * 109.47034 * 299.99544 * 7 5 4 35 35 H 1.09000 * 109.47335 * 59.99906 * 7 5 4 36 36 H 1.09002 * 109.47381 * 300.00154 * 8 7 5 37 37 H 1.09000 * 109.46929 * 59.99934 * 8 7 5 38 38 H 1.08996 * 110.24173 * 281.97911 * 10 9 8 39 39 H 1.08995 * 110.24346 * 43.98243 * 10 9 8 40 40 H 1.08998 * 111.19309 * 267.59298 * 11 10 9 41 41 H 1.08997 * 110.85632 * 143.78890 * 11 10 9 42 42 H 1.08998 * 110.49163 * 216.31331 * 12 11 10 43 43 H 1.08997 * 110.48951 * 93.66571 * 12 11 10 44 44 H 1.08998 * 109.46225 * 298.70403 * 17 15 2 45 45 H 1.09005 * 109.45827 * 58.67821 * 17 15 2 46 46 H 1.09001 * 109.49544 * 181.31472 * 18 17 15 47 47 H 1.08997 * 109.49756 * 301.38867 * 18 17 15 48 48 H 1.09006 * 109.59034 * 65.14859 * 19 18 17 49 49 H 1.08994 * 109.59000 * 185.57724 * 19 18 17 50 50 H 0.97004 * 119.99928 * 180.02562 * 24 23 21 51 51 H 1.08995 * 109.58325 * 186.60056 * 29 20 19 52 52 H 1.09002 * 109.58418 * 66.18361 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8590 1.1587 2.4115 7 6 2.6499 -0.7284 3.5875 8 6 2.7018 0.2549 4.7586 9 7 3.1900 -0.4357 5.9548 10 6 2.3274 -1.1134 6.9298 11 6 3.2679 -2.0401 7.7352 12 6 4.6254 -1.3148 7.5861 13 6 4.4852 -0.5251 6.3034 14 8 5.4071 -0.0426 5.6804 15 6 2.0400 -0.7213 -1.2492 16 1 3.1262 -0.8008 -1.2054 17 6 1.6354 0.0685 -2.4961 18 6 2.1734 -0.6348 -3.7443 19 6 1.5612 -2.0358 -3.8398 20 7 1.8219 -2.7524 -2.5838 21 6 2.4217 -3.9834 -2.5945 22 1 3.0107 -4.3044 -1.7480 23 6 2.2728 -4.8185 -3.6932 24 7 1.3124 -4.5944 -4.5649 25 14 3.4355 -6.2605 -3.9347 26 1 3.3353 -7.1775 -2.7709 27 1 3.0667 -6.9917 -5.1735 28 1 4.8284 -5.7592 -4.0514 29 6 1.4264 -2.1233 -1.3163 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.2491 -1.6317 1.1528 34 1 1.9776 -1.5507 3.8326 35 1 3.6492 -1.1203 3.3980 36 1 3.3742 1.0769 4.5133 37 1 1.7026 0.6470 4.9483 38 1 1.8575 -0.3835 7.5890 39 1 1.5681 -1.7029 6.4160 40 1 3.3084 -3.0374 7.2972 41 1 2.9638 -2.0876 8.7808 42 1 5.4370 -2.0375 7.5024 43 1 4.7949 -0.6454 8.4295 44 1 0.5485 0.1269 -2.5521 45 1 2.0507 1.0747 -2.4391 46 1 1.9048 -0.0593 -4.6302 47 1 3.2583 -0.7151 -3.6776 48 1 0.4857 -1.9548 -3.9977 49 1 2.0148 -2.5770 -4.6701 50 1 1.2081 -5.1782 -5.3325 51 1 1.7910 -2.7222 -0.4818 52 1 0.3400 -2.0494 -1.2685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265708547.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:05 Heat of formation + Delta-G solvation = -63.170323 kcal Electronic energy + Delta-G solvation = -29837.171748 eV Core-core repulsion = 25836.500359 eV Total energy + Delta-G solvation = -4000.671389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.73062 -39.86307 -38.07879 -36.69884 -35.24991 -34.04322 -33.04058 -31.32952 -30.46948 -29.92315 -28.06277 -27.92624 -25.32217 -25.01779 -23.45345 -22.30162 -22.16847 -20.70034 -20.09249 -19.60938 -18.62537 -17.56780 -16.95275 -16.79576 -16.24417 -15.95846 -15.82264 -15.17668 -14.90316 -14.48557 -14.25147 -14.10253 -13.87571 -13.77696 -13.57186 -13.37821 -13.33664 -13.06616 -12.85769 -12.46369 -12.42779 -12.33744 -12.22143 -11.91970 -11.80399 -11.63420 -11.46888 -11.34777 -11.00759 -10.92558 -10.56577 -10.50481 -10.21290 -10.14532 -10.07620 -9.92161 -9.84378 -9.60165 -9.41179 -9.06459 -8.91551 -8.48055 -6.68184 -5.81404 -3.24325 2.28582 2.59511 2.66028 3.35474 3.35887 3.42025 3.43170 3.97326 4.05090 4.38035 4.45989 4.60792 4.63770 4.76963 4.83155 5.05078 5.06078 5.10375 5.22367 5.26012 5.28194 5.35724 5.38353 5.42800 5.51551 5.53587 5.57233 5.68061 5.70014 5.72108 5.85697 6.01884 6.12688 6.20144 6.22346 6.24392 6.34733 6.49101 6.57560 6.63977 6.70229 6.77949 6.80380 6.86400 6.97231 7.38882 7.59000 7.65531 7.75920 7.87821 8.26456 8.42364 9.18472 9.82066 10.38986 11.26735 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.002460 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.914389 B =11378.730711 C =12866.107231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 H 0.081 0.919 4 N -0.719 5.719 5 C 0.518 3.482 6 O -0.549 6.549 7 C -0.160 4.160 8 C 0.143 3.857 9 N -0.621 5.621 10 C 0.099 3.901 11 C -0.132 4.132 12 C -0.156 4.156 13 C 0.514 3.486 14 O -0.529 6.529 15 C -0.113 4.113 16 H 0.071 0.929 17 C -0.100 4.100 18 C -0.143 4.143 19 C 0.170 3.830 20 N -0.591 5.591 21 C -0.255 4.255 22 H 0.063 0.937 23 C 0.004 3.996 24 N -0.902 5.902 25 Si 0.902 3.098 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.152 3.848 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.403 0.597 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.017 0.983 49 H 0.085 0.915 50 H 0.254 0.746 51 H 0.046 0.954 52 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 6.749 22.023 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.099 0.901 4 N -0.370 5.370 5 C 0.304 3.696 6 O -0.427 6.427 7 C -0.201 4.201 8 C 0.021 3.979 9 N -0.356 5.356 10 C -0.024 4.024 11 C -0.170 4.170 12 C -0.196 4.196 13 C 0.301 3.699 14 O -0.405 6.405 15 C -0.134 4.134 16 H 0.090 0.910 17 C -0.138 4.138 18 C -0.182 4.182 19 C 0.044 3.956 20 N -0.313 5.313 21 C -0.384 4.384 22 H 0.081 0.919 23 C -0.195 4.195 24 N -0.546 5.546 25 Si 0.732 3.268 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.210 1.210 29 C 0.025 3.975 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.238 0.762 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.036 0.964 49 H 0.104 0.896 50 H 0.064 0.936 51 H 0.065 0.935 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.281 7.763 21.498 22.859 hybrid contribution 0.588 -1.348 -0.274 1.495 sum 0.306 6.416 21.224 22.175 Atomic orbital electron populations 1.22250 0.95441 1.02650 1.01838 1.21037 0.94131 0.96764 0.83642 0.90074 1.46217 1.66627 1.14427 1.09737 1.20373 0.77462 0.87229 0.84553 1.90692 1.50776 1.15976 1.85261 1.22037 1.03922 1.00365 0.93784 1.21076 1.01450 0.93724 0.81656 1.48367 1.07482 1.55424 1.24302 1.22164 0.93728 0.95463 0.91026 1.22638 0.93823 0.99039 1.01527 1.22346 0.99682 1.00534 0.97063 1.20990 0.82403 0.79914 0.86575 1.90757 1.42296 1.49271 1.58185 1.21956 1.00913 0.98016 0.92518 0.91012 1.21419 1.00480 0.97223 0.94722 1.22183 1.00616 0.99587 0.95802 1.20789 0.96574 0.88010 0.90197 1.44012 1.69905 1.17460 0.99949 1.19106 1.23523 0.92048 1.03768 0.91890 1.25037 0.97353 0.97659 0.99476 1.70027 1.30179 1.39610 1.14750 0.86386 0.80975 0.82234 0.77250 1.20907 1.21624 1.21023 1.20986 0.96122 0.90346 0.89996 0.91620 0.92972 0.91443 0.76213 0.88645 0.88480 0.89080 0.89405 0.90849 0.90115 0.89754 0.89112 0.87975 0.87844 0.92254 0.93550 0.93224 0.92816 0.96446 0.89632 0.93565 0.93537 0.95682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 8.76 37.16 0.33 -1.93 16 2 C 0.15 2.15 2.35 -67.93 -0.16 1.99 16 3 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 4 N -0.72 -9.36 5.01 -53.80 -0.27 -9.63 16 5 C 0.52 6.78 7.79 -10.99 -0.09 6.69 16 6 O -0.55 -8.90 15.65 5.55 0.09 -8.82 16 7 C -0.16 -1.59 6.02 -27.88 -0.17 -1.76 16 8 C 0.14 1.44 5.22 -4.04 -0.02 1.42 16 9 N -0.62 -5.39 2.93 -172.30 -0.51 -5.89 16 10 C 0.10 0.49 7.36 -3.03 -0.02 0.47 16 11 C -0.13 -0.48 7.19 -25.00 -0.18 -0.66 16 12 C -0.16 -0.93 6.86 -26.74 -0.18 -1.11 16 13 C 0.51 5.42 8.02 -10.86 -0.09 5.33 16 14 O -0.53 -8.12 17.59 5.56 0.10 -8.02 16 15 C -0.11 -1.87 2.27 -90.50 -0.21 -2.07 16 16 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 17 C -0.10 -1.66 4.89 -26.69 -0.13 -1.79 16 18 C -0.14 -2.70 6.08 -26.61 -0.16 -2.86 16 19 C 0.17 3.98 5.30 -3.71 -0.02 3.96 16 20 N -0.59 -14.29 2.99 -172.32 -0.52 -14.81 16 21 C -0.25 -6.81 9.58 -15.06 -0.14 -6.95 16 22 H 0.06 1.64 7.88 -52.49 -0.41 1.23 16 23 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 24 N -0.90 -25.78 11.20 55.49 0.62 -25.16 16 25 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 C 0.15 2.95 5.26 -3.71 -0.02 2.94 16 30 H 0.06 0.93 6.23 -51.93 -0.32 0.60 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.90 6.60 -51.93 -0.34 0.56 16 33 H 0.40 4.82 7.28 -40.82 -0.30 4.52 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.14 7.88 -51.93 -0.41 0.73 16 37 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.96 6.63 -51.93 -0.34 0.62 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 50 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 51 H 0.05 0.86 6.75 -51.93 -0.35 0.51 16 52 H 0.03 0.50 6.06 -51.93 -0.31 0.19 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -33.68 403.50 -9.76 -43.44 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.98 Total: 2.79 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.35 Total: 3.68 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.67 Total: -55.49 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.18 Total: -16.84 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.68 -9.76 -43.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265708547.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.728 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds