Wall clock time and date at job start Tue Mar 31 2020 20:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47103 * 2 1 4 4 N 1.46499 * 109.46910 * 119.99693 * 2 1 3 5 5 C 1.34779 * 120.00363 * 275.00000 * 4 2 1 6 6 O 1.21287 * 119.99512 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00145 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.46996 * 179.97438 * 7 5 4 9 9 N 1.46499 * 109.47214 * 179.97438 * 8 7 5 10 10 C 1.46763 * 124.34978 * 269.72920 * 9 8 7 11 11 C 1.54660 * 105.38135 * 162.85434 * 10 9 8 12 12 C 1.54629 * 101.68581 * 25.76399 * 11 10 9 13 13 C 1.34422 * 124.34588 * 90.02678 * 9 8 7 14 14 O 1.21279 * 124.94194 * 0.42977 * 13 9 8 15 15 C 1.53003 * 109.47070 * 239.99670 * 2 1 3 16 16 H 1.08996 * 109.49653 * 185.06582 * 15 2 1 17 17 C 1.53039 * 109.49674 * 64.99941 * 15 2 1 18 18 C 1.53039 * 109.53805 * 178.67946 * 17 15 2 19 19 C 1.53191 * 109.31012 * 61.36872 * 18 17 15 20 20 N 1.46935 * 108.77538 * 305.36436 * 19 18 17 21 21 C 1.36929 * 120.63125 * 233.58570 * 20 19 18 22 22 H 1.08000 * 120.00028 * 151.82618 * 21 20 19 23 23 C 1.38812 * 120.00125 * 331.83340 * 21 20 19 24 24 N 1.31624 * 119.99845 * 343.08396 * 23 21 20 25 25 Si 1.86797 * 120.00301 * 163.08421 * 23 21 20 26 26 H 1.48506 * 109.47307 * 59.99856 * 25 23 21 27 27 H 1.48505 * 109.47406 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47360 * 299.99911 * 25 23 21 29 29 C 1.46928 * 118.73810 * 53.60614 * 20 19 18 30 30 H 1.09003 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47052 * 299.99889 * 1 2 3 32 32 H 1.08996 * 109.47109 * 60.00044 * 1 2 3 33 33 H 0.97003 * 120.00343 * 95.00440 * 4 2 1 34 34 H 1.08997 * 109.47034 * 299.99544 * 7 5 4 35 35 H 1.09000 * 109.47335 * 59.99906 * 7 5 4 36 36 H 1.09002 * 109.47381 * 300.00154 * 8 7 5 37 37 H 1.09000 * 109.46929 * 59.99934 * 8 7 5 38 38 H 1.08996 * 110.24173 * 281.97911 * 10 9 8 39 39 H 1.08995 * 110.24346 * 43.98243 * 10 9 8 40 40 H 1.08998 * 111.19309 * 267.59298 * 11 10 9 41 41 H 1.08997 * 110.85632 * 143.78890 * 11 10 9 42 42 H 1.08998 * 110.49163 * 216.31331 * 12 11 10 43 43 H 1.08997 * 110.48951 * 93.66571 * 12 11 10 44 44 H 1.08998 * 109.46225 * 298.70403 * 17 15 2 45 45 H 1.09005 * 109.45827 * 58.67821 * 17 15 2 46 46 H 1.09001 * 109.49544 * 181.31472 * 18 17 15 47 47 H 1.08997 * 109.49756 * 301.38867 * 18 17 15 48 48 H 1.09006 * 109.59034 * 65.14859 * 19 18 17 49 49 H 1.08994 * 109.59000 * 185.57724 * 19 18 17 50 50 H 0.97004 * 119.99928 * 180.02562 * 24 23 21 51 51 H 1.08995 * 109.58325 * 186.60056 * 29 20 19 52 52 H 1.09002 * 109.58418 * 66.18361 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8590 1.1587 2.4115 7 6 2.6499 -0.7284 3.5875 8 6 2.7018 0.2549 4.7586 9 7 3.1900 -0.4357 5.9548 10 6 2.3274 -1.1134 6.9298 11 6 3.2679 -2.0401 7.7352 12 6 4.6254 -1.3148 7.5861 13 6 4.4852 -0.5251 6.3034 14 8 5.4071 -0.0426 5.6804 15 6 2.0400 -0.7213 -1.2492 16 1 3.1262 -0.8008 -1.2054 17 6 1.6354 0.0685 -2.4961 18 6 2.1734 -0.6348 -3.7443 19 6 1.5612 -2.0358 -3.8398 20 7 1.8219 -2.7524 -2.5838 21 6 2.4217 -3.9834 -2.5945 22 1 3.0107 -4.3044 -1.7480 23 6 2.2728 -4.8185 -3.6932 24 7 1.3124 -4.5944 -4.5649 25 14 3.4355 -6.2605 -3.9347 26 1 3.3353 -7.1775 -2.7709 27 1 3.0667 -6.9917 -5.1735 28 1 4.8284 -5.7592 -4.0514 29 6 1.4264 -2.1233 -1.3163 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.2491 -1.6317 1.1528 34 1 1.9776 -1.5507 3.8326 35 1 3.6492 -1.1203 3.3980 36 1 3.3742 1.0769 4.5133 37 1 1.7026 0.6470 4.9483 38 1 1.8575 -0.3835 7.5890 39 1 1.5681 -1.7029 6.4160 40 1 3.3084 -3.0374 7.2972 41 1 2.9638 -2.0876 8.7808 42 1 5.4370 -2.0375 7.5024 43 1 4.7949 -0.6454 8.4295 44 1 0.5485 0.1269 -2.5521 45 1 2.0507 1.0747 -2.4391 46 1 1.9048 -0.0593 -4.6302 47 1 3.2583 -0.7151 -3.6776 48 1 0.4857 -1.9548 -3.9977 49 1 2.0148 -2.5770 -4.6701 50 1 1.2081 -5.1782 -5.3325 51 1 1.7910 -2.7222 -0.4818 52 1 0.3400 -2.0494 -1.2685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265708547.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:04 Heat of formation + Delta-G solvation = -84.824502 kcal Electronic energy + Delta-G solvation = -29838.110744 eV Core-core repulsion = 25836.500359 eV Total energy + Delta-G solvation = -4001.610384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.49254 -40.95252 -39.51533 -37.50562 -36.70701 -34.77459 -34.66963 -32.63913 -32.26729 -30.80177 -29.40279 -28.43204 -27.22115 -25.99096 -24.67990 -23.86897 -22.71807 -22.16509 -21.23828 -20.35454 -20.08977 -18.75445 -18.34659 -17.57100 -17.25047 -16.92308 -16.81390 -16.75112 -16.07950 -15.87702 -15.66472 -15.15879 -14.98973 -14.79682 -14.71983 -14.58445 -14.21819 -14.11632 -13.99278 -13.94710 -13.58183 -13.38296 -13.25210 -13.09930 -13.03127 -12.74032 -12.69985 -12.35082 -12.30918 -12.14582 -12.05272 -11.95762 -11.81827 -11.69138 -11.51560 -11.29051 -11.09041 -10.94284 -10.82355 -10.50953 -10.06944 -9.77164 -8.64424 -7.86105 -5.31250 1.46483 1.49503 1.51131 1.55520 1.60832 1.87325 2.38138 2.51354 3.28506 3.44638 3.58394 3.66409 3.74975 3.90607 3.96976 3.97983 4.00841 4.06592 4.10129 4.26343 4.34607 4.41302 4.45949 4.48212 4.65113 4.66847 4.69125 4.70314 4.75971 4.85099 4.88422 4.91514 4.92700 4.98281 5.04996 5.13260 5.13899 5.21210 5.26128 5.29494 5.34433 5.47238 5.53514 5.54049 5.58912 5.68130 5.79050 6.13666 6.40077 6.53374 7.11560 7.16107 7.21691 7.88138 8.39813 9.19769 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.002460 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.914389 B =11378.730711 C =12866.107231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 H 0.076 0.924 4 N -0.716 5.716 5 C 0.519 3.481 6 O -0.581 6.581 7 C -0.147 4.147 8 C 0.145 3.855 9 N -0.619 5.619 10 C 0.091 3.909 11 C -0.120 4.120 12 C -0.150 4.150 13 C 0.497 3.503 14 O -0.591 6.591 15 C -0.098 4.098 16 H 0.061 0.939 17 C -0.098 4.098 18 C -0.132 4.132 19 C 0.175 3.825 20 N -0.610 5.610 21 C -0.262 4.262 22 H 0.067 0.933 23 C -0.050 4.050 24 N -0.934 5.934 25 Si 0.964 3.036 26 H -0.273 1.273 27 H -0.296 1.296 28 H -0.281 1.281 29 C 0.152 3.848 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.409 0.591 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.119 0.881 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.046 0.954 48 H -0.002 1.002 49 H 0.049 0.951 50 H 0.249 0.751 51 H 0.053 0.947 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 6.389 24.471 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.053 3.947 3 H 0.094 0.906 4 N -0.368 5.368 5 C 0.306 3.694 6 O -0.461 6.461 7 C -0.188 4.188 8 C 0.022 3.978 9 N -0.351 5.351 10 C -0.030 4.030 11 C -0.158 4.158 12 C -0.190 4.190 13 C 0.287 3.713 14 O -0.472 6.472 15 C -0.119 4.119 16 H 0.079 0.921 17 C -0.136 4.136 18 C -0.171 4.171 19 C 0.049 3.951 20 N -0.333 5.333 21 C -0.392 4.392 22 H 0.085 0.915 23 C -0.246 4.246 24 N -0.580 5.580 25 Si 0.792 3.208 26 H -0.199 1.199 27 H -0.222 1.222 28 H -0.208 1.208 29 C 0.027 3.973 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.245 0.755 34 H 0.144 0.856 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.137 0.863 42 H 0.124 0.876 43 H 0.136 0.864 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.016 0.984 49 H 0.068 0.932 50 H 0.058 0.942 51 H 0.072 0.928 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.775 7.388 23.999 25.122 hybrid contribution 0.685 -1.198 -1.001 1.705 sum -0.090 6.190 22.998 23.817 Atomic orbital electron populations 1.22180 0.94619 1.02465 1.02211 1.20837 0.94596 0.96127 0.83168 0.90621 1.46184 1.66439 1.14696 1.09435 1.20833 0.76615 0.86836 0.85128 1.90680 1.52226 1.17449 1.85760 1.21963 1.04028 1.00671 0.92132 1.20925 1.01108 0.93167 0.82615 1.48521 1.07725 1.54734 1.24169 1.22504 0.93746 0.96067 0.90667 1.22684 0.91547 0.98492 1.03034 1.22388 1.01454 1.00406 0.94753 1.21897 0.82215 0.79549 0.87631 1.90713 1.44187 1.51970 1.60367 1.21736 0.99968 0.96379 0.93808 0.92058 1.21412 1.00930 0.98045 0.93175 1.22022 0.99779 0.97162 0.98149 1.20606 0.95291 0.90086 0.89132 1.44275 1.70148 1.17242 1.01598 1.19465 1.23163 0.92842 1.03726 0.91484 1.25762 0.98822 1.00374 0.99596 1.70180 1.31897 1.40715 1.15214 0.85402 0.78959 0.79465 0.76983 1.19868 1.22230 1.20774 1.21111 0.96254 0.91756 0.88179 0.91984 0.92796 0.90909 0.75464 0.85646 0.89044 0.92395 0.88272 0.89314 0.88550 0.89187 0.86301 0.87633 0.86365 0.91620 0.91037 0.91284 0.93537 0.98408 0.93228 0.94195 0.92815 0.95660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 8.76 71.98 0.63 -3.39 16 2 C 0.16 4.30 2.35 44.99 0.11 4.41 16 3 H 0.08 2.22 7.58 -2.39 -0.02 2.21 16 4 N -0.72 -17.60 5.01 -442.52 -2.22 -19.82 16 5 C 0.52 13.00 7.79 87.66 0.68 13.68 16 6 O -0.58 -18.48 15.65 -3.05 -0.05 -18.53 16 7 C -0.15 -2.73 6.02 29.85 0.18 -2.55 16 8 C 0.14 2.83 5.22 86.38 0.45 3.28 16 9 N -0.62 -9.92 2.93 -817.62 -2.40 -12.32 16 10 C 0.09 0.61 7.36 86.89 0.64 1.25 16 11 C -0.12 -0.44 7.19 31.71 0.23 -0.21 16 12 C -0.15 -1.49 6.86 30.59 0.21 -1.28 16 13 C 0.50 10.33 8.02 87.90 0.71 11.04 16 14 O -0.59 -18.97 17.59 -3.03 -0.05 -19.03 16 15 C -0.10 -3.11 2.27 -10.72 -0.02 -3.13 16 16 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 17 C -0.10 -3.04 4.89 30.62 0.15 -2.89 16 18 C -0.13 -4.89 6.08 30.67 0.19 -4.70 16 19 C 0.17 8.32 5.30 86.36 0.46 8.78 16 20 N -0.61 -29.60 2.99 -699.09 -2.09 -31.69 16 21 C -0.26 -14.02 9.58 84.03 0.81 -13.22 16 22 H 0.07 3.46 7.88 -2.91 -0.02 3.44 16 23 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 24 N -0.93 -54.77 11.20 21.65 0.24 -54.52 16 25 Si 0.96 44.32 29.59 68.60 2.03 46.35 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 28 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 29 C 0.15 5.79 5.26 86.36 0.45 6.24 16 30 H 0.06 1.64 6.23 -2.39 -0.01 1.62 16 31 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.07 1.79 6.60 -2.39 -0.02 1.77 16 33 H 0.41 9.09 7.28 -92.71 -0.68 8.42 16 34 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.06 1.52 7.88 -2.39 -0.02 1.50 16 37 H 0.10 1.69 8.10 -2.39 -0.02 1.67 16 38 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 41 H 0.12 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 1.99 6.63 -2.39 -0.02 1.97 16 45 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 46 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 49 H 0.05 2.71 6.06 -2.39 -0.01 2.69 16 50 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 51 H 0.05 1.93 6.75 -2.39 -0.02 1.91 16 52 H 0.03 0.98 6.06 -2.39 -0.01 0.97 16 Total: -1.00 -76.10 403.50 1.97 -74.13 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.23 Total: 20.48 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 6.28 Total: 14.95 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -6.47 Total: -118.35 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -0.10 Total: -37.56 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -76.10 1.97 -74.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265708547.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.698 kcal (2) G-P(sol) polarization free energy of solvation -76.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds