Wall clock time and date at job start Tue Mar 31 2020 20:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.46682 * 2 1 4 4 N 1.46499 * 109.46982 * 239.99842 * 2 1 3 5 5 C 1.36938 * 120.00021 * 76.57644 * 4 2 1 6 6 H 1.08001 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99750 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00273 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99621 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47326 * 60.00331 * 9 7 5 11 11 H 1.48498 * 109.46874 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47063 * 300.00126 * 9 7 5 13 13 C 1.53001 * 109.46815 * 119.99585 * 2 1 3 14 14 H 1.08999 * 109.58342 * 72.38562 * 13 2 1 15 15 C 1.53187 * 109.59030 * 312.10170 * 13 2 1 16 16 C 1.53076 * 109.29578 * 185.71924 * 15 13 2 17 17 C 1.53038 * 109.65668 * 61.15070 * 16 15 13 18 18 C 1.53192 * 109.31604 * 298.70187 * 17 16 15 19 19 N 1.46923 * 108.77740 * 54.63520 * 18 17 16 20 20 C 1.34774 * 120.63446 * 126.41454 * 19 18 17 21 21 O 1.21277 * 119.99780 * 175.13450 * 20 19 18 22 22 C 1.50701 * 119.99494 * 355.13361 * 20 19 18 23 23 N 1.46504 * 109.46509 * 179.97438 * 22 20 19 24 24 C 1.45754 * 117.94701 * 269.73553 * 23 22 20 25 25 C 1.53105 * 110.38490 * 160.74583 * 24 23 22 26 26 C 1.53348 * 108.52513 * 51.11797 * 25 24 23 27 27 C 1.53072 * 108.42405 * 292.30646 * 26 25 24 28 28 C 1.33353 * 117.94254 * 90.00169 * 23 22 20 29 29 O 1.21279 * 118.25298 * 2.24451 * 28 23 22 30 30 H 1.09001 * 109.47450 * 306.21159 * 1 2 3 31 31 H 1.09002 * 109.46908 * 66.21537 * 1 2 3 32 32 H 1.09010 * 109.47165 * 186.21108 * 1 2 3 33 33 H 0.96997 * 120.00010 * 256.56965 * 4 2 1 34 34 H 0.96995 * 119.99970 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.49720 * 305.52733 * 15 13 2 36 36 H 1.08996 * 109.49886 * 65.62705 * 15 13 2 37 37 H 1.08997 * 109.34811 * 301.12554 * 16 15 13 38 38 H 1.08998 * 109.44106 * 181.23586 * 16 15 13 39 39 H 1.08997 * 109.49937 * 178.74349 * 17 16 15 40 40 H 1.09003 * 109.49627 * 58.65477 * 17 16 15 41 41 H 1.09000 * 109.57979 * 294.84655 * 18 17 16 42 42 H 1.09003 * 109.59012 * 174.42493 * 18 17 16 43 43 H 1.08994 * 109.47204 * 299.99872 * 22 20 19 44 44 H 1.09003 * 109.46953 * 60.00338 * 22 20 19 45 45 H 1.08993 * 109.30294 * 281.24273 * 24 23 22 46 46 H 1.08998 * 109.29721 * 40.62281 * 24 23 22 47 47 H 1.08999 * 109.80965 * 291.32843 * 25 24 23 48 48 H 1.09001 * 109.67845 * 170.82779 * 25 24 23 49 49 H 1.09005 * 109.67105 * 172.57782 * 26 25 24 50 50 H 1.08999 * 109.70531 * 52.06025 * 26 25 24 51 51 H 1.08999 * 109.39958 * 288.77492 * 27 26 25 52 52 H 1.08998 * 109.39709 * 169.03350 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.9870 -0.0604 -2.4114 6 1 1.6019 0.9457 -2.4882 7 6 2.4501 -0.7146 -3.5447 8 7 2.9190 -1.9409 -3.4513 9 14 2.4067 0.1449 -5.2026 10 1 3.2277 1.3808 -5.1412 11 1 2.9528 -0.7614 -6.2445 12 1 1.0045 0.4985 -5.5403 13 6 2.0399 -0.7212 1.2493 14 1 1.8687 -1.7928 1.1480 15 6 1.2989 -0.1971 2.4833 16 6 1.9109 -0.8170 3.7421 17 6 3.3831 -0.4132 3.8511 18 6 4.1452 -0.9422 2.6321 19 7 3.4775 -0.4654 1.4133 20 6 4.1704 0.1936 0.4636 21 8 3.6291 0.5045 -0.5761 22 6 5.6179 0.5443 0.6939 23 7 6.1412 1.2518 -0.4774 24 6 6.7453 0.4589 -1.5408 25 6 6.7944 1.2625 -2.8430 26 6 7.4385 2.6234 -2.5517 27 6 6.4898 3.4263 -1.6583 28 6 6.0397 2.5812 -0.5013 29 8 5.5587 3.1377 0.4630 30 1 -0.3634 0.6071 0.8292 31 1 -0.3633 0.4145 -0.9404 32 1 -0.3634 -1.0217 0.1112 33 1 2.3639 -1.5943 -1.1273 34 1 3.2423 -2.3982 -4.2432 35 1 1.3938 0.8877 2.5313 36 1 0.2452 -0.4680 2.4172 37 1 1.8356 -1.9027 3.6832 38 1 1.3712 -0.4626 4.6202 39 1 3.8104 -0.8374 4.7597 40 1 3.4607 0.6736 3.8852 41 1 4.1454 -2.0322 2.6462 42 1 5.1711 -0.5743 2.6545 43 1 5.7014 1.1839 1.5725 44 1 6.1920 -0.3685 0.8531 45 1 7.7567 0.1762 -1.2493 46 1 6.1536 -0.4429 -1.6982 47 1 5.7840 1.4103 -3.2243 48 1 7.3897 0.7270 -3.5826 49 1 7.6034 3.1590 -3.4867 50 1 8.3896 2.4777 -2.0396 51 1 5.6214 3.7369 -2.2392 52 1 7.0069 4.3091 -1.2823 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266000812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:59 Heat of formation + Delta-G solvation = -41.254453 kcal Electronic energy + Delta-G solvation = -32957.797303 eV Core-core repulsion = 28958.076258 eV Total energy + Delta-G solvation = -3999.721045 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.87900 -40.91879 -38.13506 -37.41082 -36.95564 -34.90632 -34.12949 -33.59315 -31.48459 -30.63872 -29.52156 -28.92532 -26.23931 -25.72019 -25.23385 -24.16538 -23.31263 -21.80528 -21.40655 -20.25909 -19.51509 -18.80549 -17.85858 -17.67091 -17.50104 -16.77400 -16.67771 -16.27921 -15.80959 -15.51441 -15.40782 -15.18416 -15.03754 -14.84237 -14.70961 -14.44500 -14.28641 -14.13815 -13.99973 -13.82792 -13.61266 -13.45244 -12.98683 -12.90866 -12.82694 -12.68504 -12.53369 -12.41722 -12.23743 -12.15639 -11.94567 -11.87377 -11.84618 -11.69610 -11.58991 -11.40035 -11.18180 -10.73966 -10.72072 -10.22381 -9.47139 -9.24756 -8.50468 -7.73286 -4.89779 1.41458 1.43342 1.49507 1.52193 1.99985 2.08633 2.39262 2.66072 3.58358 3.59182 3.66688 3.82390 3.86655 3.87277 3.89507 3.97777 4.08223 4.15026 4.22078 4.31775 4.36834 4.37885 4.41564 4.48244 4.55336 4.62542 4.64624 4.72721 4.76909 4.82119 4.87019 4.91107 4.94209 4.96191 5.05883 5.06953 5.12125 5.14091 5.18495 5.27064 5.32307 5.39046 5.40753 5.46974 5.56019 5.62260 5.97224 6.45744 6.46933 6.74807 7.12475 7.53371 7.72250 8.30427 8.56737 9.51192 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008620 B = 0.006630 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3247.643955 B = 4222.138785 C = 6530.281043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.183 3.817 3 H 0.022 0.978 4 N -0.689 5.689 5 C -0.160 4.160 6 H 0.040 0.960 7 C -0.080 4.080 8 N -0.972 5.972 9 Si 0.945 3.055 10 H -0.292 1.292 11 H -0.294 1.294 12 H -0.292 1.292 13 C 0.153 3.847 14 H 0.057 0.943 15 C -0.121 4.121 16 C -0.113 4.113 17 C -0.129 4.129 18 C 0.104 3.896 19 N -0.616 5.616 20 C 0.448 3.552 21 O -0.482 6.482 22 C 0.095 3.905 23 N -0.578 5.578 24 C 0.121 3.879 25 C -0.136 4.136 26 C -0.107 4.107 27 C -0.131 4.131 28 C 0.514 3.486 29 O -0.603 6.603 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.050 0.950 33 H 0.364 0.636 34 H 0.240 0.760 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.109 0.891 44 H 0.125 0.875 45 H 0.102 0.898 46 H 0.049 0.951 47 H 0.033 0.967 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.083 0.917 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.115 2.732 14.512 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.075 3.925 3 H 0.040 0.960 4 N -0.327 5.327 5 C -0.293 4.293 6 H 0.058 0.942 7 C -0.270 4.270 8 N -0.627 5.627 9 Si 0.778 3.222 10 H -0.219 1.219 11 H -0.220 1.220 12 H -0.219 1.219 13 C 0.049 3.951 14 H 0.075 0.925 15 C -0.160 4.160 16 C -0.151 4.151 17 C -0.167 4.167 18 C -0.018 4.018 19 N -0.353 5.353 20 C 0.232 3.768 21 O -0.352 6.352 22 C -0.032 4.032 23 N -0.308 5.308 24 C -0.001 4.001 25 C -0.174 4.174 26 C -0.144 4.144 27 C -0.171 4.171 28 C 0.304 3.696 29 O -0.486 6.486 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.195 0.805 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.127 0.873 44 H 0.143 0.857 45 H 0.120 0.880 46 H 0.068 0.932 47 H 0.052 0.948 48 H 0.120 0.880 49 H 0.112 0.888 50 H 0.113 0.887 51 H 0.102 0.898 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.585 3.353 14.234 17.485 hybrid contribution -0.410 0.014 -1.473 1.529 sum 9.175 3.367 12.761 16.074 Atomic orbital electron populations 1.22408 0.98286 1.00918 1.00122 1.20397 0.91197 0.95085 0.85839 0.95984 1.42199 1.73360 1.14440 1.02723 1.18970 1.28565 0.95562 0.86205 0.94185 1.24983 1.04847 0.97590 0.99545 1.69760 1.52356 1.12928 1.27666 0.85587 0.77107 0.77323 0.82154 1.21901 1.22024 1.21904 1.21325 0.80497 0.98295 0.94975 0.92466 1.21956 0.99976 1.00141 0.93912 1.21505 0.95808 1.00965 0.96779 1.21898 0.95749 1.01033 0.98025 1.21929 0.97023 0.99655 0.83205 1.48055 1.08669 1.58070 1.20551 1.21656 0.90236 0.80598 0.84265 1.91245 1.68857 1.49768 1.25337 1.21447 0.92042 0.99263 0.90407 1.46979 1.57611 1.05843 1.20364 1.21503 0.98331 0.93695 0.86573 1.21868 1.01018 0.97634 0.96881 1.21626 0.98139 0.94159 1.00522 1.21669 1.01734 0.99081 0.94594 1.20692 0.77289 0.82654 0.88938 1.90628 1.48157 1.71970 1.37827 0.91387 0.95434 0.93090 0.80465 0.95068 0.93029 0.89808 0.91113 0.90084 0.88044 0.92716 0.90613 0.88751 0.87265 0.85720 0.87967 0.93243 0.94787 0.87953 0.88779 0.88681 0.89844 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.16 8.47 71.98 0.61 -5.55 16 2 C 0.18 8.08 1.83 44.99 0.08 8.16 16 3 H 0.02 1.15 6.39 -2.39 -0.02 1.13 16 4 N -0.69 -36.88 3.26 -322.95 -1.05 -37.93 16 5 C -0.16 -9.60 8.08 84.03 0.68 -8.92 16 6 H 0.04 2.51 7.83 -2.91 -0.02 2.49 16 7 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 8 N -0.97 -61.31 13.06 21.65 0.28 -61.03 16 9 Si 0.95 49.87 29.55 68.60 2.03 51.90 16 10 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 11 H -0.29 -15.31 7.11 99.48 0.71 -14.60 16 12 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 13 C 0.15 5.22 2.62 44.97 0.12 5.34 16 14 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 15 C -0.12 -3.13 4.45 30.68 0.14 -3.00 16 16 C -0.11 -2.10 5.88 30.63 0.18 -1.92 16 17 C -0.13 -2.25 6.08 30.67 0.19 -2.06 16 18 C 0.10 2.19 6.35 86.36 0.55 2.74 16 19 N -0.62 -19.79 2.97 -795.03 -2.36 -22.15 16 20 C 0.45 17.41 7.48 87.66 0.66 18.07 16 21 O -0.48 -24.04 9.23 -3.02 -0.03 -24.06 16 22 C 0.10 2.91 4.05 85.63 0.35 3.26 16 23 N -0.58 -18.87 2.30 -830.63 -1.91 -20.78 16 24 C 0.12 3.50 6.32 86.55 0.55 4.05 16 25 C -0.14 -3.81 6.03 30.75 0.19 -3.63 16 26 C -0.11 -2.27 6.03 30.74 0.19 -2.08 16 27 C -0.13 -3.59 6.03 29.71 0.18 -3.41 16 28 C 0.51 18.10 7.44 87.71 0.65 18.75 16 29 O -0.60 -25.26 16.18 -3.03 -0.05 -25.31 16 30 H 0.07 2.20 6.85 -2.39 -0.02 2.18 16 31 H 0.03 1.20 7.94 -2.39 -0.02 1.18 16 32 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.36 20.94 7.70 -92.71 -0.71 20.22 16 34 H 0.24 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 2.00 6.84 -2.39 -0.02 1.99 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.09 1.64 5.93 -2.39 -0.01 1.63 16 43 H 0.11 3.23 6.88 -2.39 -0.02 3.21 16 44 H 0.13 2.90 7.61 -2.39 -0.02 2.88 16 45 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 47 H 0.03 1.28 8.12 -2.39 -0.02 1.26 16 48 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 49 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 50 H 0.09 1.54 8.12 -2.39 -0.02 1.52 16 51 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 52 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -82.09 392.97 2.85 -79.24 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: 0.19 Total: 34.69 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: 5.76 Total: 25.43 kcal Atomic # 7 Polarization: -136.85 SS G_CDS: -5.05 Total: -141.90 kcal Atomic # 8 Polarization: -49.29 SS G_CDS: -0.08 Total: -49.37 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.03 Total: 51.90 kcal Total: -82.09 2.85 -79.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266000812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.991 kcal (2) G-P(sol) polarization free energy of solvation -82.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds